BDGP Sequence Production Resources |
Search the DGRC for RH02452
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 24 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | FMRFa-RA |
Protein status: | RH02452.pep: gold |
Preliminary Size: | 1044 |
Sequenced Size: | 1443 |
Gene | Date | Evidence |
---|---|---|
CG2346 | 2001-12-13 | Blastp of sequenced clone |
CG2346 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2346 | 2003-01-01 | Sim4 clustering to Release 3 |
Fmrf | 2008-04-29 | Release 5.5 accounting |
Fmrf | 2008-08-15 | Release 5.9 accounting |
Fmrf | 2008-12-18 | 5.12 accounting |
1443 bp (1443 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070639
> RH02452.complete GACAGAACTGTTCCACCTTCGAGCGGGCAACAAGTGTGTGTGCGGCCCAA AAGGATCCCCAGACCTTCGAATTCACTCTAGTTTCCTAGTAAGGGGACAG GTTTCAGAGATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGTACCAGAT GCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTATGCGGGCA ACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGACAATGAC CTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGGAGCTGGA GTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAGAACGCCG TGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAAGTACGAT CCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCATGCACTT CGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTATGCTGAAT CCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCGGTATGGC AGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGAAACAGGA CTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGATTCGGTC GGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAAGCAGGAT TTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGTTCGGACG CACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAATTTCATGC GCTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACAGGATTTC ATGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTTCCGCTCC GCAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATTCGATTCG GTAAGAGCTTGAAGCCGGCGGCTCCCGAGTCCAAGCCAGTCAAGTCCAAT CAAGGCAACCCAGGCGAACGCAGTCCAGTGGACAAGGCCATGACGGAGCT GTTCAAGAAACAGGAGCTGCAGGATCAGCAGGTGAAGAACGGCGCACAGG CGACCACCACGCAGGATGGGAGTGTGGAACAGGACCAGTTCTTCGGCCAG TGAGGTAGTCCTGCGGGACGCCTCCTTGTAAATAGATATGGACAAATGTA CGCAAGGATCTAAATTGATATACGTATATAACCCACTCCTCACACGAACT CCTGACTTATGCCTGAACTATGAATTTTTAATGAATGGGCTGGATTAAAA ATTCACCGTGCTTTGAAGTTCTTATCTATAAATATATCTAGTGTAATATT GAAGAAATTGAAATTGGCGTGAATAAAATCCTGTGGCAACATTTTAAATA AAGATTGCTTTACTGTAAATTATAGCGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5796640..5797960 | 108..1428 | 6515 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 5797119..5797316 | 554..751 | 570 | 85.9 | Plus |
chr2R | 21145070 | chr2R | 5797086..5797283 | 587..784 | 570 | 85.9 | Plus |
chr2R | 21145070 | chr2R | 5793799..5793906 | 2..109 | 540 | 100 | Plus |
chr2R | 21145070 | chr2R | 5797141..5797316 | 543..718 | 310 | 78.4 | Plus |
chr2R | 21145070 | chr2R | 5797075..5797250 | 609..784 | 310 | 78.4 | Plus |
chr2R | 21145070 | chr2R | 5797086..5797147 | 653..714 | 190 | 87.1 | Plus |
chr2R | 21145070 | chr2R | 5797185..5797246 | 554..615 | 190 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9909137..9910458 | 108..1429 | 6610 | 100 | Plus |
2R | 25286936 | 2R | 9909583..9909780 | 587..784 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909616..9909813 | 554..751 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9906294..9906401 | 2..109 | 540 | 100 | Plus |
2R | 25286936 | 2R | 9909572..9909747 | 609..784 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909638..9909813 | 543..718 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909583..9909644 | 653..714 | 190 | 87.1 | Plus |
2R | 25286936 | 2R | 9909682..9909743 | 554..615 | 190 | 87.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5793798..5793906 | 1..109 | 99 | -> | Plus |
chr2R | 5796642..5797960 | 110..1428 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fmrf-RA | 1..1044 | 110..1153 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fmrf-RA | 1..1044 | 110..1153 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FMRFa-RA | 1..1044 | 110..1153 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fmrf-RA | 1..1044 | 110..1153 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FMRFa-RA | 1..1044 | 110..1153 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fmrf-RA | 3..1430 | 1..1428 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fmrf-RA | 3..1430 | 1..1428 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FMRFa-RA | 1..1427 | 2..1428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fmrf-RA | 3..1430 | 1..1428 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FMRFa-RA | 1..1427 | 2..1428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9906293..9906401 | 1..109 | 99 | -> | Plus |
2R | 9909139..9910457 | 110..1428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9906293..9906401 | 1..109 | 99 | -> | Plus |
2R | 9909139..9910457 | 110..1428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9906293..9906401 | 1..109 | 99 | -> | Plus |
2R | 9909139..9910457 | 110..1428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5793798..5793906 | 1..109 | 99 | -> | Plus |
arm_2R | 5796644..5797962 | 110..1428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9910338..9911656 | 110..1428 | 100 | Plus | |
2R | 9907492..9907600 | 1..109 | 99 | -> | Plus |
Translation from 0 to 1152
> RH02452.hyp TELFHLRAGNKCVCGPKGSPDLRIHSSFLVRGQVSEMGIALMFLLALYQM QSAIHSEIIDTPNYAGNSLQDADSEVSPPQDNDLVDALLGNDQTERAELE FRHPISVIGIDYSKNAVVLHFQKHGRKPRYKYDPELEAKRRSVQDNFMHF GKRQAEQLPPEGSYAESDELEGMAKRAAMDRYGRDPKQDFMRFGRDPKQD FMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRTPAEDFMRFGR TPAEDFMRFGRSDNFMRFGRSPHEELRSPKQDFMRFGRPDNFMRFGRSAP QDFVRSGKMDSNFIRFGKSLKPAAPESKPVKSNQGNPGERSPVDKAMTEL FKKQELQDQQVKNGAQATTTQDGSVEQDQFFGQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
FMRFa-PA | 347 | CG2346-PA | 1..347 | 37..383 | 1838 | 100 | Plus |
Translation from 109 to 1152
> RH02452.pep MGIALMFLLALYQMQSAIHSEIIDTPNYAGNSLQDADSEVSPPQDNDLVD ALLGNDQTERAELEFRHPISVIGIDYSKNAVVLHFQKHGRKPRYKYDPEL EAKRRSVQDNFMHFGKRQAEQLPPEGSYAESDELEGMAKRAAMDRYGRDP KQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMR FGRTPAEDFMRFGRTPAEDFMRFGRSDNFMRFGRSPHEELRSPKQDFMRF GRPDNFMRFGRSAPQDFVRSGKMDSNFIRFGKSLKPAAPESKPVKSNQGN PGERSPVDKAMTELFKKQELQDQQVKNGAQATTTQDGSVEQDQFFGQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13563-PA | 308 | GF13563-PA | 1..308 | 1..347 | 983 | 62.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24119-PA | 349 | GG24119-PA | 1..349 | 1..347 | 1654 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20248-PA | 421 | GH20248-PA | 1..380 | 1..318 | 988 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
FMRFa-PA | 347 | CG2346-PA | 1..347 | 1..347 | 1838 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19418-PA | 335 | GI19418-PA | 1..298 | 1..317 | 852 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16762-PA | 353 | GL16762-PA | 1..353 | 1..347 | 1170 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15356-PA | 353 | GA15356-PA | 1..353 | 1..347 | 1172 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21167-PA | 345 | GM21167-PA | 1..345 | 1..347 | 1739 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10699-PA | 347 | GD10699-PA | 1..347 | 1..347 | 1766 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Fmrf-PA | 346 | GJ22482-PA | 1..342 | 1..341 | 846 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15742-PA | 339 | GK15742-PA | 1..338 | 1..346 | 1056 | 64.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19316-PA | 474 | GE19316-PA | 132..474 | 1..347 | 1710 | 94.5 | Plus |