Clone RH02475 Report

Search the DGRC for RH02475

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:24
Well:75
Vector:pFlc-1
Associated Gene/TranscriptCG9394-RA
Protein status:RH02475.pep: gold
Sequenced Size:2329

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9394 2001-12-13 Blastp of sequenced clone
CG9394 2002-01-01 Sim4 clustering to Release 2
CG9394 2003-01-01 Sim4 clustering to Release 3
CG9394 2008-04-29 Release 5.5 accounting
CG9394 2008-08-15 Release 5.9 accounting
CG9394 2008-12-18 5.12 accounting

Clone Sequence Records

RH02475.complete Sequence

2329 bp (2329 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070640

> RH02475.complete
GAGAACGGGTTTGACCGCCGGCCCGACGAGACGGATTTCCCTATCGCGCC
GTGACTTCGATATCACGGAACCTTATCAACTCGGGTACTCGAAGATGTGG
CCACTGCCATAAATCTCGTCACAGTGATTCCAGTGCCAGGAGAGGTGGTG
GTCAGACGCCTTAGCACCAAAAAAAACCAGAACACAGTTCCAATTCGTGC
GCCGTCGAGGGCAGACATGTCGGTGTCCTGGTCGAAGACTTTCGCGGCAT
TCACCGTCGCCTGGCTCAGTGCCCTGTGCCTGCTGCCCGTGGAGACATTC
TGTGACACCTCCTACTACGAGAAGTACTACGCGGCGCGGCGCTATGTGCC
CCTCAAGCGAAATGCTCCGCTGGTCTTCAACTTTACCCTAACGCTGCCGG
ATGCGGATCAACTGGCGTCCTTCGAGCGGCCCGCCCTGGTGGGCAATCTG
CCAGTGCTGGGCGCCTGGCAAGCGGGACGCGCTGTGCTCCTCAACCGCAC
TGCAATCCTGAATGTTTGGAGCGCCTCCGTGGAGATACCGCAAAACAGCA
GCGTTGAGTATCGCTACTTTGCCGCCGCCGTTGGCCAGAGTGGAGCCGTG
CAGATTCGCCGCTGGGAGTCGCATGTCCAGGCAAGGACCTTTAATACCAC
CAAGTTCAGTGGCAATCGCAGCGATGAGTTCGGACTCATTGGCAATGAGC
GCCAGTTGTCGCGTGGCTGGCTTCAGGACTCGGGCAACATTCTGCAGTTG
AAGCTCTTCCGCGAGGCTCTGAGCTTGGAGGAGCAACCGGAGGTGGGGCA
GGAGAAGCTGCGTCTGCGTTTGCAACCAGTAGATCCAAAGACTCTAGCGC
CCATCCTAAGTTCGGCACGTGCCAATGTGGAGTACGTGCGAATGGCGTAC
GGTGACAGTAAGCTGCGGGTGCAGCCGGAGTACGGAGTGCCCTACGCCAC
CGGTGACATCCTCATGTTCCATGTGAACCTGGAACAGCTGGATCGAGTGG
CCTATCTGGTGGAAGTTTATGCCGAACAACCGGATGAGGACCTGGTCCGT
CTCCTAGGATACTCGCACCTGCTGCACACCTCGTTCTCCGGCACTGAAGG
CGATGTGTCCATCGACCTTATTTCGCCGCTCTGGCAGCGCGTGGTGGGTC
AACTGCGTATTGAGTACCTGCACATTCGGCCCATGGAGAAGGATGGCTTC
GATCTGCGCACCAGCTTCGCCAACTACTGGCGCTCCAATTGGACAGCCCT
GGAGATTGGCCATCGGGGATTGGGAAAATCTCTTACGGTCACCACGAATG
CGGCTCCGCTTATCGAGAACACGGTGGCCACCATGCTGGCCTCCTCTGAA
TTGGGCGCTGATCTCGTGGAGTTTGATGTGCAGCTGACCAGCGACCTGGT
GCCCATCATCCACCATGATTTTTCCATTCGCGTCTGCATTGACTCGAAGA
CCCCAACGAGCAAAGATGATTTGACCGAGGTGCTGCTAAAGGACATATCC
TATGAGCAGCTCAAGGATCTGAAAACCTACCAGATCGTGGGCAACAAGAT
TGTCGAGTATCCGGCGCACAACAACGTGGAACCGCCGGAGCAGCGACTTT
TCCCCACACTGCAGGACTTCTTTGAGCGGGTGAACCTGTCCACCGGATTC
GACATCGAGATCAAGTGGCCACAGCAGAGGGCCGATGGACTGTTTGAGAG
CGAACAGACGCTGGACAAGAACCTGTTCGCGGATCGCATTCTGGCTGTGG
TGCGACGACATGGCTGCGGTCGACTCAATGTGATCAAGAGCTTCGACGCG
GACTTATGCTCCCTGCTGCGCTTCAAGCAGCACATGTACCCGGTGCTCTT
CCTCTCCAGCAGCAAGGAGAACGTCTTCAACGATCCCCGCACCAGCACCG
TGGAGCAGAGCGTCAACTTTGCCCAGGCCTTCGATCTGGGCGGCGTGTCA
CCCAACGCCGTGTTCGTCAAGGCGGATCCGGGTTTGGTGCAACGGGCAAA
GGCACAGGTGCCCATTGTCCTGCTCTGGGGCTCGGACCTCAAGGATCGGG
AGTCCATCGACTGGTTCCTGCAGCAGGGACCCACTGGAGTCATCTACGAT
CGACTCGACCTCTGGCTGGGCGCCAACAGGACGAGTGCGTTCGAGGCGGA
GCAGGATCTGCCGGGCTACTTCCAGCTACAGTGCGATCCGGCGCCCAAGG
AGCGCGAGGTGAACTCCACCATCGAAAGCATACTGAGTAATGTTAACTTC
CTGTAGTGAATTCTGTAGAGCCACCAGAGATATATACATCATGCAATAAA
ATAACTAAAAAGGAAAAAAAAAAAAAAAA

RH02475.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9394-RA 2316 CG9394-RA 2..2313 2..2314 11525 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17004839..17007149 2..2313 11120 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21118395..21120706 2..2314 11515 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21119594..21121905 2..2314 11525 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 21:26:32 has no hits.

RH02475.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:27:23 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17004838..17007149 1..2313 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:27 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 1..2040 217..2256 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:10 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 1..2040 217..2256 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:15 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 1..2040 217..2256 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:36 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 1..2040 217..2256 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:48:18 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 2..2312 2..2313 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:10 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 2..2312 2..2313 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:15 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 2..2312 2..2313 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:17 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 2..2312 2..2313 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:36 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
CG9394-RA 2..2312 2..2313 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:27:23 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21118394..21120705 1..2313 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:27:23 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21118394..21120705 1..2313 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:27:23 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21118394..21120705 1..2313 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:15 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17005899..17008210 1..2313 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:19 Download gff for RH02475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21119593..21121904 1..2313 99   Plus

RH02475.pep Sequence

Translation from 216 to 2255

> RH02475.pep
MSVSWSKTFAAFTVAWLSALCLLPVETFCDTSYYEKYYAARRYVPLKRNA
PLVFNFTLTLPDADQLASFERPALVGNLPVLGAWQAGRAVLLNRTAILNV
WSASVEIPQNSSVEYRYFAAAVGQSGAVQIRRWESHVQARTFNTTKFSGN
RSDEFGLIGNERQLSRGWLQDSGNILQLKLFREALSLEEQPEVGQEKLRL
RLQPVDPKTLAPILSSARANVEYVRMAYGDSKLRVQPEYGVPYATGDILM
FHVNLEQLDRVAYLVEVYAEQPDEDLVRLLGYSHLLHTSFSGTEGDVSID
LISPLWQRVVGQLRIEYLHIRPMEKDGFDLRTSFANYWRSNWTALEIGHR
GLGKSLTVTTNAAPLIENTVATMLASSELGADLVEFDVQLTSDLVPIIHH
DFSIRVCIDSKTPTSKDDLTEVLLKDISYEQLKDLKTYQIVGNKIVEYPA
HNNVEPPEQRLFPTLQDFFERVNLSTGFDIEIKWPQQRADGLFESEQTLD
KNLFADRILAVVRRHGCGRLNVIKSFDADLCSLLRFKQHMYPVLFLSSSK
ENVFNDPRTSTVEQSVNFAQAFDLGGVSPNAVFVKADPGLVQRAKAQVPI
VLLWGSDLKDRESIDWFLQQGPTGVIYDRLDLWLGANRTSAFEAEQDLPG
YFQLQCDPAPKEREVNSTIESILSNVNFL*

RH02475.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11933-PA 679 GF11933-PA 1..679 1..679 3143 85.1 Plus
Dana\GF10791-PA 653 GF10791-PA 56..651 54..656 1028 37.1 Plus
Dana\GF15249-PA 706 GF15249-PA 58..681 66..662 839 32.2 Plus
Dana\GF10793-PA 695 GF10793-PA 66..645 50..631 736 31.7 Plus
Dana\GF17237-PA 737 GF17237-PA 52..686 65..631 605 27.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22087-PA 679 GG22087-PA 1..679 1..679 3381 93.2 Plus
Dere\GG13436-PA 653 GG13436-PA 56..651 54..656 1029 37.1 Plus
Dere\GG24960-PA 707 GG24960-PA 55..682 65..662 830 31.3 Plus
Dere\GG13438-PA 697 GG13438-PA 68..673 50..656 738 32.1 Plus
Dere\GG18685-PA 739 GG18685-PA 52..685 66..631 545 27 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20718-PA 679 GH20718-PA 1..679 3..679 2566 70.6 Plus
Dgri\GH16957-PA 653 GH16957-PA 53..651 54..656 1029 37.5 Plus
Dgri\GH13702-PA 706 GH13702-PA 50..660 64..632 840 31.9 Plus
Dgri\GH16958-PA 718 GH16958-PA 86..694 51..656 783 34.3 Plus
Dgri\GH10111-PA 735 GH10111-PA 41..681 55..631 508 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9394-PB 679 CG9394-PB 1..679 1..679 3513 100 Plus
CG9394-PA 679 CG9394-PA 1..679 1..679 3513 100 Plus
CG18135-PB 636 CG18135-PB 39..634 54..656 1001 37 Plus
CG18135-PE 649 CG18135-PE 52..647 54..656 1001 37 Plus
CG18135-PA 653 CG18135-PA 56..651 54..656 1001 37 Plus
CG18135-PC 711 CG18135-PC 114..709 54..656 1001 37 Plus
CG18135-PD 770 CG18135-PD 173..768 54..656 1001 37 Plus
CG2818-PA 707 CG2818-PA 56..682 66..662 799 31.2 Plus
CG11619-PA 699 CG11619-PA 71..675 51..656 726 31.6 Plus
CG2818-PB 521 CG2818-PB 50..496 215..662 667 33.4 Plus
CG3942-PA 739 CG3942-PA 56..685 70..631 528 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20802-PA 674 GI20802-PA 5..674 7..679 2478 68.9 Plus
Dmoj\GI11816-PA 655 GI11816-PA 58..653 54..656 1008 37.6 Plus
Dmoj\GI23897-PA 704 GI23897-PA 51..658 64..632 808 30.9 Plus
Dmoj\GI11818-PA 693 GI11818-PA 69..668 53..656 770 33.7 Plus
Dmoj\GI14466-PA 725 GI14466-PA 58..686 70..631 491 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21983-PA 668 GL21983-PA 71..666 54..656 1060 37.8 Plus
Dper\GL18669-PA 706 GL18669-PA 56..681 64..662 824 31.7 Plus
Dper\GL22006-PA 692 GL22006-PA 116..668 101..656 685 31.9 Plus
Dper\GL22271-PA 740 GL22271-PA 60..687 70..631 562 27.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21756-PA 685 GA21756-PA 11..685 7..679 2762 75.7 Plus
Dpse\GA14809-PA 670 GA14809-PA 73..668 54..656 1058 37.8 Plus
Dpse\GA15473-PA 706 GA15473-PA 56..681 64..662 820 31.6 Plus
Dpse\GA11101-PA 686 GA11101-PA 59..662 51..656 726 32.1 Plus
Dpse\GA17792-PA 740 GA17792-PA 56..687 66..631 559 26.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15804-PA 679 GM15804-PA 1..679 1..679 3538 97.8 Plus
Dsec\GM14904-PA 653 GM14904-PA 56..651 54..656 1038 37.4 Plus
Dsec\GM18429-PA 707 GM18429-PA 56..682 66..662 828 31.2 Plus
Dsec\GM14906-PA 697 GM14906-PA 68..673 50..656 736 31.5 Plus
Dsec\GM24007-PA 739 GM24007-PA 56..685 70..631 528 27.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11563-PA 490 GD11563-PA 10..490 199..679 2517 97.5 Plus
Dsim\GD12312-PA 636 GD12312-PA 39..634 54..656 1037 37.4 Plus
Dsim\GD23248-PA 707 GD23248-PA 56..682 66..662 828 31.2 Plus
Dsim\GD17913-PA 483 GD17913-PA 6..459 197..656 642 33.1 Plus
Dsim\GD18806-PA 739 GD18806-PA 56..685 70..631 538 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20535-PA 680 GJ20535-PA 1..680 1..679 2638 72.4 Plus
Dvir\GJ13519-PA 656 GJ13519-PA 59..654 54..656 1003 37.4 Plus
Dvir\GJ21158-PA 708 GJ21158-PA 55..662 64..632 828 32.2 Plus
Dvir\GJ13521-PA 698 GJ13521-PA 68..673 51..656 778 34.6 Plus
Dvir\GJ16268-PA 724 GJ16268-PA 52..684 66..631 443 26.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20974-PA 675 GK20974-PA 1..675 3..679 2626 71.4 Plus
Dwil\GK12569-PA 648 GK12569-PA 53..646 54..656 1041 37.4 Plus
Dwil\GK14645-PA 710 GK14645-PA 54..685 64..662 822 31.9 Plus
Dwil\GK12589-PA 694 GK12589-PA 65..670 50..656 722 31.7 Plus
Dwil\GK11537-PA 434 GK11537-PA 57..416 70..405 326 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12167-PA 490 GE12167-PA 10..490 199..679 2426 93.3 Plus
Dyak\GE22533-PA 653 GE22533-PA 56..651 54..656 1014 37 Plus
Dyak\GE18251-PA 708 GE18251-PA 55..683 65..662 839 31.5 Plus
Dyak\GE22535-PA 966 GE22535-PA 71..635 51..617 704 31.8 Plus
Dyak\GE22535-PA 966 GE22535-PA 635..964 330..656 697 41.9 Plus
Dyak\GE26167-PA 739 GE26167-PA 52..685 66..631 586 28.3 Plus

RH02475.hyp Sequence

Translation from 216 to 2255

> RH02475.hyp
MSVSWSKTFAAFTVAWLSALCLLPVETFCDTSYYEKYYAARRYVPLKRNA
PLVFNFTLTLPDADQLASFERPALVGNLPVLGAWQAGRAVLLNRTAILNV
WSASVEIPQNSSVEYRYFAAAVGQSGAVQIRRWESHVQARTFNTTKFSGN
RSDEFGLIGNERQLSRGWLQDSGNILQLKLFREALSLEEQPEVGQEKLRL
RLQPVDPKTLAPILSSARANVEYVRMAYGDSKLRVQPEYGVPYATGDILM
FHVNLEQLDRVAYLVEVYAEQPDEDLVRLLGYSHLLHTSFSGTEGDVSID
LISPLWQRVVGQLRIEYLHIRPMEKDGFDLRTSFANYWRSNWTALEIGHR
GLGKSLTVTTNAAPLIENTVATMLASSELGADLVEFDVQLTSDLVPIIHH
DFSIRVCIDSKTPTSKDDLTEVLLKDISYEQLKDLKTYQIVGNKIVEYPA
HNNVEPPEQRLFPTLQDFFERVNLSTGFDIEIKWPQQRADGLFESEQTLD
KNLFADRILAVVRRHGCGRLNVIKSFDADLCSLLRFKQHMYPVLFLSSSK
ENVFNDPRTSTVEQSVNFAQAFDLGGVSPNAVFVKADPGLVQRAKAQVPI
VLLWGSDLKDRESIDWFLQQGPTGVIYDRLDLWLGANRTSAFEAEQDLPG
YFQLQCDPAPKEREVNSTIESILSNVNFL*

RH02475.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9394-PB 679 CG9394-PB 1..679 1..679 3513 100 Plus
CG9394-PA 679 CG9394-PA 1..679 1..679 3513 100 Plus
CG18135-PB 636 CG18135-PB 39..634 54..656 1001 37 Plus
CG18135-PE 649 CG18135-PE 52..647 54..656 1001 37 Plus
CG18135-PA 653 CG18135-PA 56..651 54..656 1001 37 Plus