Clone RH02588 Report

Search the DGRC for RH02588

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:25
Well:88
Vector:pFlc-1
Associated Gene/TranscriptArr2-RA
Protein status:RH02588.pep: gold
Sequenced Size:1558

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17077 2006-04-07 manual selection replacement
Arr2 2008-04-29 Release 5.5 accounting
Arr2 2008-08-15 Release 5.9 accounting
Arr2 2008-12-18 5.12 accounting

Clone Sequence Records

RH02588.complete Sequence

1558 bp assembled on 2007-07-18

GenBank Submission: BT031017

> RH02588.complete
GGCATTTTCCTCCGCCGAACGGAAAACTCTATAACGCGCATCGCCCGACT
TAGCCTCGAATTGCACAGTTGCATTTGCCAGGAATCAAAGAAATCCACTA
ATCCACAATGGTTGTATCCGTGAAGGTCTTTAAGAAGGCCACGCCCAACG
GCAAGGTCACCTTTTATCTGGGACGCCGCGACTTCATCGACCACATCGAC
TACTGTGATCCCGTCGATGGAGTGATTGTGGTGGAACCGGACTATCTAAA
GAACAGGAAAGTCTTTGGCCAACTGGCCACCACCTATCGCTATGGTCGCG
AGGAGGACGAGGTCATGGGAGTGAAGTTCTCCAAGGAGCTTATCCTGTGC
CGGGAGCAAATTGTGCCCATGACAAATCCCAACATGGAGATGACACCGAT
GCAGGAGAAGCTGGTCCGCAAACTGGGCAGCAACGCCTATCCGTTCACCT
TCCACTTCCCGCCCAATTCGCCCAGCTCCGTTACTCTGCAGCAGGAGGGC
GACGACAATGGCAAGCCCCTGGGCGTCGAGTACACCATCCGGGCATTTGT
GGGCGACTCCGAGGACGATCGCCAGCACAAGCGGAGCATGGTCAGTCTGG
TGATCAAGAAGCTGCAGTACGCTCCCCTCAATCGTGGCCAGCGTCTGCCC
AGCTCGCTGGTCAGCAAGGGATTCACCTTCTCGAATGGCAAGATCAGTCT
GGAGGTTACGCTGGACAGGGAGATCTACTATCATGGCGAGAAGACGGCTG
CCACCGTCCAGGTGTCGAACAACTCCAAGAAGTCCGTGAAGAGCATCAAG
TGCTTCATTGTGCAGCACACTGAGATCACCATGGTGAACGCCCAGTTCAG
CAAGCATGTGGCCCAGCTGGAGACCAAGGAGGGCTGCCCCATCACTCCGG
GCGCCAATCTCACCAAGACCTTCTACTTGATTCCGCTGGCGGCTAACAAC
AAGGATCGCCATGGTATCGCCCTGGATGGTCACTTGAAGGACGAGGATGT
CAACCTGGCTTCATCCACCATGGTGCAGGAGGGCAAGTCCACGGGAGATG
CCTGTGGTATTGTCATCTCGTACTCGGTGCGCATTAAGCTCAACTGCGGC
ACTCTGGGAGGTGAAATGCAGACGGATGTGCCCTTCAAGCTACTCCAACC
GGCACCTGGAACCATTGAGAAGAAGCGCTCGAATGCCATGAAGAAAATGA
AGTCCATCGAGCAGCACCGCAATGTGAAGGGCTATTACCAGGATGATGAC
GATAATATTGTATTCGAGGACTTCGCCAAGATGCGCATGAACAATGTGAA
CATGGCGGACTAGGCCACCGATCTTCAATCTCTTCTAGCTCTGTTGTGAA
CCGAATTGAACTAAATCGAAAGCACTGAAAATTTGTTGCAGCAGTCTCTC
GTGGAGGCCACAATCTTTGTATTATAATCGTATCTATAATGTAACTTTGG
TGGATCTGGAGTTTGTACCCGTACATATGCATGTTGATGAGTTGAACAGA
CCTCGTGTCGCTATATTATAAATGTGTTATGGCTATCAAAAGCAAAAAAA
AAAAAAAA

RH02588.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Arr2-RA 1652 Arr2-RA 108..1650 2..1544 7685 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8639980..8640944 966..2 4660 98.9 Minus
chr3L 24539361 chr3L 8639274..8639659 1543..1158 1930 100 Minus
chr3L 24539361 chr3L 8639723..8639916 1156..963 940 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8647967..8648931 966..2 4795 99.8 Minus
3L 28110227 3L 8647260..8647646 1544..1158 1935 100 Minus
3L 28110227 3L 8647707..8647903 1159..963 985 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8641067..8642031 966..2 4795 99.7 Minus
3L 28103327 3L 8640360..8640746 1544..1158 1935 100 Minus
3L 28103327 3L 8640807..8641003 1159..963 985 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:22:53 has no hits.

RH02588.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:23:57 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8639274..8639658 1159..1543 100 <- Minus
chr3L 8639721..8639915 964..1158 98 <- Minus
chr3L 8639983..8640944 1..963 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:29 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 1..1206 108..1313 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:25:59 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 1..1206 108..1313 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:52 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 1..1206 108..1313 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:10:44 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 1..1206 108..1313 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:20 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 1..1206 108..1313 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:31:31 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 5..1541 1..1537 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:25:59 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 5..1541 1..1537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:52 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 5..1547 1..1543 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:10:45 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 5..1541 1..1537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:20 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
Arr2-RA 5..1547 1..1543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:57 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8647261..8647645 1159..1543 100 <- Minus
3L 8647708..8647902 964..1158 100 <- Minus
3L 8647970..8648931 1..963 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:57 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8647261..8647645 1159..1543 100 <- Minus
3L 8647708..8647902 964..1158 100 <- Minus
3L 8647970..8648931 1..963 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:57 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8647261..8647645 1159..1543 100 <- Minus
3L 8647708..8647902 964..1158 100 <- Minus
3L 8647970..8648931 1..963 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:52 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8640361..8640745 1159..1543 100 <- Minus
arm_3L 8640808..8641002 964..1158 100 <- Minus
arm_3L 8641070..8642031 1..963 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:58:13 Download gff for RH02588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8640361..8640745 1159..1543 100 <- Minus
3L 8640808..8641002 964..1158 100 <- Minus
3L 8641070..8642031 1..963 99   Minus

RH02588.pep Sequence

Translation from 107 to 1312

> RH02588.pep
MVVSVKVFKKATPNGKVTFYLGRRDFIDHIDYCDPVDGVIVVEPDYLKNR
KVFGQLATTYRYGREEDEVMGVKFSKELILCREQIVPMTNPNMEMTPMQE
KLVRKLGSNAYPFTFHFPPNSPSSVTLQQEGDDNGKPLGVEYTIRAFVGD
SEDDRQHKRSMVSLVIKKLQYAPLNRGQRLPSSLVSKGFTFSNGKISLEV
TLDREIYYHGEKTAATVQVSNNSKKSVKSIKCFIVQHTEITMVNAQFSKH
VAQLETKEGCPITPGANLTKTFYLIPLAANNKDRHGIALDGHLKDEDVNL
ASSTMVQEGKSTGDACGIVISYSVRIKLNCGTLGGEMQTDVPFKLLQPAP
GTIEKKRSNAMKKMKSIEQHRNVKGYYQDDDDNIVFEDFAKMRMNNVNMA
D*

RH02588.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10152-PA 401 GF10152-PA 1..401 1..401 2127 98.3 Plus
Dana\GF14811-PA 364 GF14811-PA 1..350 1..350 897 46.3 Plus
Dana\GF17501-PA 485 GF17501-PA 57..404 4..350 877 46.9 Plus
Dana\GF19559-PA 761 GF19559-PA 56..219 6..167 300 34.8 Plus
Dana\GF23483-PA 164 GF23483-PA 1..164 115..305 219 32.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15065-PA 401 GG15065-PA 1..401 1..401 2153 99.8 Plus
Dere\GG21103-PA 364 GG21103-PA 1..350 1..350 924 46.6 Plus
Dere\GG11843-PA 468 GG11843-PA 43..461 4..394 884 42.5 Plus
Dere\GG18921-PA 819 GG18921-PA 113..276 6..167 299 35.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16146-PA 401 GH16146-PA 1..401 1..401 2105 97.5 Plus
Dgri\GH11636-PA 364 GH11636-PA 1..350 1..350 903 45.7 Plus
Dgri\GH17469-PA 494 GH17469-PA 68..415 4..350 883 47.1 Plus
Dgri\GH23290-PA 160 GH23290-PA 1..160 242..401 859 99.4 Plus
Dgri\GH22560-PA 149 GH22560-PA 1..141 1..141 730 95 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Arr2-PA 401 CG5962-PA 1..401 1..401 2086 100 Plus
Arr1-PB 364 CG5711-PB 1..350 1..350 898 46.9 Plus
Arr1-PA 364 CG5711-PA 1..350 1..350 898 46.9 Plus
krz-PB 470 CG1487-PB 46..463 4..394 880 43.3 Plus
krz-PA 470 CG1487-PA 46..463 4..394 880 43.3 Plus
Arr1-PC 350 CG5711-PC 17..336 31..350 789 45.7 Plus
CG32683-PB 804 CG32683-PB 103..378 6..272 291 28.6 Plus
CG32683-PA 804 CG32683-PA 103..378 6..272 291 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12414-PA 401 GI12414-PA 1..401 1..401 2127 98.8 Plus
Dmoj\GI17937-PA 364 GI17937-PA 1..350 1..350 904 45.7 Plus
Dmoj\GI22795-PA 498 GI22795-PA 72..419 4..350 889 47.4 Plus
Dmoj\GI15392-PA 824 GI15392-PA 108..271 6..167 310 36 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10292-PA 401 GL10292-PA 1..401 1..401 2136 98.8 Plus
Dper\GL14653-PA 363 GL14653-PA 1..350 1..350 891 46 Plus
Dper\GL24101-PA 479 GL24101-PA 65..472 4..394 807 40 Plus
Dper\GL14887-PA 673 GL14887-PA 135..298 6..167 297 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19261-PA 401 GA19261-PA 1..401 1..401 2136 98.8 Plus
Dpse\GA19076-PA 363 GA19076-PA 1..350 1..350 891 46 Plus
Dpse\GA13309-PA 492 GA13309-PA 65..485 4..394 868 41.6 Plus
Dpse\GA17070-PA 968 GA17070-PA 185..348 6..167 297 35.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24922-PA 401 GM24922-PA 1..401 1..401 2146 99.5 Plus
Dsec\GM17260-PA 364 GM17260-PA 1..350 1..350 924 46.6 Plus
Dsec\GM16407-PA 471 GM16407-PA 46..393 4..350 883 47.1 Plus
Dsec\GM11315-PA 581 GM11315-PA 99..262 6..167 297 35.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12969-PA 401 GD12969-PA 1..401 1..401 2153 99.8 Plus
Dsim\GD24126-PA 364 GD24126-PA 1..350 1..350 924 46.6 Plus
Dsim\GD16195-PA 341 GD16195-PA 7..263 95..350 606 46.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12307-PA 401 GJ12307-PA 1..401 1..401 2100 97 Plus
Dvir\GJ22798-PA 489 GJ22798-PA 63..410 4..350 891 47.4 Plus
Dvir\GJ17709-PA 364 GJ17709-PA 1..350 1..350 883 45.5 Plus
Dvir\GJ14789-PA 830 GJ14789-PA 137..300 6..167 306 35.4 Plus
Dvir\GJ14679-PA 92 GJ14679-PA 2..91 273..368 186 40.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17474-PA 401 GK17474-PA 1..401 1..401 2108 97.8 Plus
Dwil\GK18171-PA 364 GK18171-PA 1..350 1..350 896 46 Plus
Dwil\GK10933-PA 495 GK10933-PA 65..412 4..350 887 47.1 Plus
Dwil\GK19772-PA 954 GK19772-PA 209..372 6..167 311 36.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21289-PA 401 GE21289-PA 1..401 1..401 2153 99.8 Plus
Dyak\Arr1-PA 364 GE12809-PA 1..350 1..350 920 46.3 Plus
Dyak\GE23289-PA 471 GE23289-PA 46..464 4..394 903 43.2 Plus
Dyak\GE15393-PA 809 GE15393-PA 110..273 6..167 298 35.4 Plus

RH02588.hyp Sequence

Translation from 107 to 1312

> RH02588.hyp
MVVSVKVFKKATPNGKVTFYLGRRDFIDHIDYCDPVDGVIVVEPDYLKNR
KVFGQLATTYRYGREEDEVMGVKFSKELILCREQIVPMTNPNMEMTPMQE
KLVRKLGSNAYPFTFHFPPNSPSSVTLQQEGDDNGKPLGVEYTIRAFVGD
SEDDRQHKRSMVSLVIKKLQYAPLNRGQRLPSSLVSKGFTFSNGKISLEV
TLDREIYYHGEKTAATVQVSNNSKKSVKSIKCFIVQHTEITMVNAQFSKH
VAQLETKEGCPITPGANLTKTFYLIPLAANNKDRHGIALDGHLKDEDVNL
ASSTMVQEGKSTGDACGIVISYSVRIKLNCGTLGGEMQTDVPFKLLQPAP
GTIEKKRSNAMKKMKSIEQHRNVKGYYQDDDDNIVFEDFAKMRMNNVNMA
D*

RH02588.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Arr2-PA 401 CG5962-PA 1..401 1..401 2086 100 Plus
Arr1-PB 364 CG5711-PB 1..350 1..350 898 46.9 Plus
Arr1-PA 364 CG5711-PA 1..350 1..350 898 46.9 Plus
krz-PB 470 CG1487-PB 46..463 4..394 880 43.3 Plus
krz-PA 470 CG1487-PA 46..463 4..394 880 43.3 Plus