BDGP Sequence Production Resources |
Search the DGRC for RH02588
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 25 |
Well: | 88 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Arr2-RA |
Protein status: | RH02588.pep: gold |
Sequenced Size: | 1558 |
Gene | Date | Evidence |
---|---|---|
CG17077 | 2006-04-07 | manual selection replacement |
Arr2 | 2008-04-29 | Release 5.5 accounting |
Arr2 | 2008-08-15 | Release 5.9 accounting |
Arr2 | 2008-12-18 | 5.12 accounting |
1558 bp assembled on 2007-07-18
GenBank Submission: BT031017
> RH02588.complete GGCATTTTCCTCCGCCGAACGGAAAACTCTATAACGCGCATCGCCCGACT TAGCCTCGAATTGCACAGTTGCATTTGCCAGGAATCAAAGAAATCCACTA ATCCACAATGGTTGTATCCGTGAAGGTCTTTAAGAAGGCCACGCCCAACG GCAAGGTCACCTTTTATCTGGGACGCCGCGACTTCATCGACCACATCGAC TACTGTGATCCCGTCGATGGAGTGATTGTGGTGGAACCGGACTATCTAAA GAACAGGAAAGTCTTTGGCCAACTGGCCACCACCTATCGCTATGGTCGCG AGGAGGACGAGGTCATGGGAGTGAAGTTCTCCAAGGAGCTTATCCTGTGC CGGGAGCAAATTGTGCCCATGACAAATCCCAACATGGAGATGACACCGAT GCAGGAGAAGCTGGTCCGCAAACTGGGCAGCAACGCCTATCCGTTCACCT TCCACTTCCCGCCCAATTCGCCCAGCTCCGTTACTCTGCAGCAGGAGGGC GACGACAATGGCAAGCCCCTGGGCGTCGAGTACACCATCCGGGCATTTGT GGGCGACTCCGAGGACGATCGCCAGCACAAGCGGAGCATGGTCAGTCTGG TGATCAAGAAGCTGCAGTACGCTCCCCTCAATCGTGGCCAGCGTCTGCCC AGCTCGCTGGTCAGCAAGGGATTCACCTTCTCGAATGGCAAGATCAGTCT GGAGGTTACGCTGGACAGGGAGATCTACTATCATGGCGAGAAGACGGCTG CCACCGTCCAGGTGTCGAACAACTCCAAGAAGTCCGTGAAGAGCATCAAG TGCTTCATTGTGCAGCACACTGAGATCACCATGGTGAACGCCCAGTTCAG CAAGCATGTGGCCCAGCTGGAGACCAAGGAGGGCTGCCCCATCACTCCGG GCGCCAATCTCACCAAGACCTTCTACTTGATTCCGCTGGCGGCTAACAAC AAGGATCGCCATGGTATCGCCCTGGATGGTCACTTGAAGGACGAGGATGT CAACCTGGCTTCATCCACCATGGTGCAGGAGGGCAAGTCCACGGGAGATG CCTGTGGTATTGTCATCTCGTACTCGGTGCGCATTAAGCTCAACTGCGGC ACTCTGGGAGGTGAAATGCAGACGGATGTGCCCTTCAAGCTACTCCAACC GGCACCTGGAACCATTGAGAAGAAGCGCTCGAATGCCATGAAGAAAATGA AGTCCATCGAGCAGCACCGCAATGTGAAGGGCTATTACCAGGATGATGAC GATAATATTGTATTCGAGGACTTCGCCAAGATGCGCATGAACAATGTGAA CATGGCGGACTAGGCCACCGATCTTCAATCTCTTCTAGCTCTGTTGTGAA CCGAATTGAACTAAATCGAAAGCACTGAAAATTTGTTGCAGCAGTCTCTC GTGGAGGCCACAATCTTTGTATTATAATCGTATCTATAATGTAACTTTGG TGGATCTGGAGTTTGTACCCGTACATATGCATGTTGATGAGTTGAACAGA CCTCGTGTCGCTATATTATAAATGTGTTATGGCTATCAAAAGCAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arr2-RA | 1652 | Arr2-RA | 108..1650 | 2..1544 | 7685 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8639980..8640944 | 966..2 | 4660 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 8639274..8639659 | 1543..1158 | 1930 | 100 | Minus |
chr3L | 24539361 | chr3L | 8639723..8639916 | 1156..963 | 940 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 8647967..8648931 | 966..2 | 4795 | 99.8 | Minus |
3L | 28110227 | 3L | 8647260..8647646 | 1544..1158 | 1935 | 100 | Minus |
3L | 28110227 | 3L | 8647707..8647903 | 1159..963 | 985 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 8641067..8642031 | 966..2 | 4795 | 99.7 | Minus |
3L | 28103327 | 3L | 8640360..8640746 | 1544..1158 | 1935 | 100 | Minus |
3L | 28103327 | 3L | 8640807..8641003 | 1159..963 | 985 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8639274..8639658 | 1159..1543 | 100 | <- | Minus |
chr3L | 8639721..8639915 | 964..1158 | 98 | <- | Minus |
chr3L | 8639983..8640944 | 1..963 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 1..1206 | 108..1313 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 1..1206 | 108..1313 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 1..1206 | 108..1313 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 1..1206 | 108..1313 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 1..1206 | 108..1313 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 5..1541 | 1..1537 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 5..1541 | 1..1537 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 5..1547 | 1..1543 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 5..1541 | 1..1537 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arr2-RA | 5..1547 | 1..1543 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8647261..8647645 | 1159..1543 | 100 | <- | Minus |
3L | 8647708..8647902 | 964..1158 | 100 | <- | Minus |
3L | 8647970..8648931 | 1..963 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8647261..8647645 | 1159..1543 | 100 | <- | Minus |
3L | 8647708..8647902 | 964..1158 | 100 | <- | Minus |
3L | 8647970..8648931 | 1..963 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8647261..8647645 | 1159..1543 | 100 | <- | Minus |
3L | 8647708..8647902 | 964..1158 | 100 | <- | Minus |
3L | 8647970..8648931 | 1..963 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8640361..8640745 | 1159..1543 | 100 | <- | Minus |
arm_3L | 8640808..8641002 | 964..1158 | 100 | <- | Minus |
arm_3L | 8641070..8642031 | 1..963 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8640361..8640745 | 1159..1543 | 100 | <- | Minus |
3L | 8640808..8641002 | 964..1158 | 100 | <- | Minus |
3L | 8641070..8642031 | 1..963 | 99 | Minus |
Translation from 107 to 1312
> RH02588.pep MVVSVKVFKKATPNGKVTFYLGRRDFIDHIDYCDPVDGVIVVEPDYLKNR KVFGQLATTYRYGREEDEVMGVKFSKELILCREQIVPMTNPNMEMTPMQE KLVRKLGSNAYPFTFHFPPNSPSSVTLQQEGDDNGKPLGVEYTIRAFVGD SEDDRQHKRSMVSLVIKKLQYAPLNRGQRLPSSLVSKGFTFSNGKISLEV TLDREIYYHGEKTAATVQVSNNSKKSVKSIKCFIVQHTEITMVNAQFSKH VAQLETKEGCPITPGANLTKTFYLIPLAANNKDRHGIALDGHLKDEDVNL ASSTMVQEGKSTGDACGIVISYSVRIKLNCGTLGGEMQTDVPFKLLQPAP GTIEKKRSNAMKKMKSIEQHRNVKGYYQDDDDNIVFEDFAKMRMNNVNMA D*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10152-PA | 401 | GF10152-PA | 1..401 | 1..401 | 2127 | 98.3 | Plus |
Dana\GF14811-PA | 364 | GF14811-PA | 1..350 | 1..350 | 897 | 46.3 | Plus |
Dana\GF17501-PA | 485 | GF17501-PA | 57..404 | 4..350 | 877 | 46.9 | Plus |
Dana\GF19559-PA | 761 | GF19559-PA | 56..219 | 6..167 | 300 | 34.8 | Plus |
Dana\GF23483-PA | 164 | GF23483-PA | 1..164 | 115..305 | 219 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15065-PA | 401 | GG15065-PA | 1..401 | 1..401 | 2153 | 99.8 | Plus |
Dere\GG21103-PA | 364 | GG21103-PA | 1..350 | 1..350 | 924 | 46.6 | Plus |
Dere\GG11843-PA | 468 | GG11843-PA | 43..461 | 4..394 | 884 | 42.5 | Plus |
Dere\GG18921-PA | 819 | GG18921-PA | 113..276 | 6..167 | 299 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16146-PA | 401 | GH16146-PA | 1..401 | 1..401 | 2105 | 97.5 | Plus |
Dgri\GH11636-PA | 364 | GH11636-PA | 1..350 | 1..350 | 903 | 45.7 | Plus |
Dgri\GH17469-PA | 494 | GH17469-PA | 68..415 | 4..350 | 883 | 47.1 | Plus |
Dgri\GH23290-PA | 160 | GH23290-PA | 1..160 | 242..401 | 859 | 99.4 | Plus |
Dgri\GH22560-PA | 149 | GH22560-PA | 1..141 | 1..141 | 730 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arr2-PA | 401 | CG5962-PA | 1..401 | 1..401 | 2086 | 100 | Plus |
Arr1-PB | 364 | CG5711-PB | 1..350 | 1..350 | 898 | 46.9 | Plus |
Arr1-PA | 364 | CG5711-PA | 1..350 | 1..350 | 898 | 46.9 | Plus |
krz-PB | 470 | CG1487-PB | 46..463 | 4..394 | 880 | 43.3 | Plus |
krz-PA | 470 | CG1487-PA | 46..463 | 4..394 | 880 | 43.3 | Plus |
Arr1-PC | 350 | CG5711-PC | 17..336 | 31..350 | 789 | 45.7 | Plus |
CG32683-PB | 804 | CG32683-PB | 103..378 | 6..272 | 291 | 28.6 | Plus |
CG32683-PA | 804 | CG32683-PA | 103..378 | 6..272 | 291 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12414-PA | 401 | GI12414-PA | 1..401 | 1..401 | 2127 | 98.8 | Plus |
Dmoj\GI17937-PA | 364 | GI17937-PA | 1..350 | 1..350 | 904 | 45.7 | Plus |
Dmoj\GI22795-PA | 498 | GI22795-PA | 72..419 | 4..350 | 889 | 47.4 | Plus |
Dmoj\GI15392-PA | 824 | GI15392-PA | 108..271 | 6..167 | 310 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10292-PA | 401 | GL10292-PA | 1..401 | 1..401 | 2136 | 98.8 | Plus |
Dper\GL14653-PA | 363 | GL14653-PA | 1..350 | 1..350 | 891 | 46 | Plus |
Dper\GL24101-PA | 479 | GL24101-PA | 65..472 | 4..394 | 807 | 40 | Plus |
Dper\GL14887-PA | 673 | GL14887-PA | 135..298 | 6..167 | 297 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19261-PA | 401 | GA19261-PA | 1..401 | 1..401 | 2136 | 98.8 | Plus |
Dpse\GA19076-PA | 363 | GA19076-PA | 1..350 | 1..350 | 891 | 46 | Plus |
Dpse\GA13309-PA | 492 | GA13309-PA | 65..485 | 4..394 | 868 | 41.6 | Plus |
Dpse\GA17070-PA | 968 | GA17070-PA | 185..348 | 6..167 | 297 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24922-PA | 401 | GM24922-PA | 1..401 | 1..401 | 2146 | 99.5 | Plus |
Dsec\GM17260-PA | 364 | GM17260-PA | 1..350 | 1..350 | 924 | 46.6 | Plus |
Dsec\GM16407-PA | 471 | GM16407-PA | 46..393 | 4..350 | 883 | 47.1 | Plus |
Dsec\GM11315-PA | 581 | GM11315-PA | 99..262 | 6..167 | 297 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12969-PA | 401 | GD12969-PA | 1..401 | 1..401 | 2153 | 99.8 | Plus |
Dsim\GD24126-PA | 364 | GD24126-PA | 1..350 | 1..350 | 924 | 46.6 | Plus |
Dsim\GD16195-PA | 341 | GD16195-PA | 7..263 | 95..350 | 606 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12307-PA | 401 | GJ12307-PA | 1..401 | 1..401 | 2100 | 97 | Plus |
Dvir\GJ22798-PA | 489 | GJ22798-PA | 63..410 | 4..350 | 891 | 47.4 | Plus |
Dvir\GJ17709-PA | 364 | GJ17709-PA | 1..350 | 1..350 | 883 | 45.5 | Plus |
Dvir\GJ14789-PA | 830 | GJ14789-PA | 137..300 | 6..167 | 306 | 35.4 | Plus |
Dvir\GJ14679-PA | 92 | GJ14679-PA | 2..91 | 273..368 | 186 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17474-PA | 401 | GK17474-PA | 1..401 | 1..401 | 2108 | 97.8 | Plus |
Dwil\GK18171-PA | 364 | GK18171-PA | 1..350 | 1..350 | 896 | 46 | Plus |
Dwil\GK10933-PA | 495 | GK10933-PA | 65..412 | 4..350 | 887 | 47.1 | Plus |
Dwil\GK19772-PA | 954 | GK19772-PA | 209..372 | 6..167 | 311 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21289-PA | 401 | GE21289-PA | 1..401 | 1..401 | 2153 | 99.8 | Plus |
Dyak\Arr1-PA | 364 | GE12809-PA | 1..350 | 1..350 | 920 | 46.3 | Plus |
Dyak\GE23289-PA | 471 | GE23289-PA | 46..464 | 4..394 | 903 | 43.2 | Plus |
Dyak\GE15393-PA | 809 | GE15393-PA | 110..273 | 6..167 | 298 | 35.4 | Plus |
Translation from 107 to 1312
> RH02588.hyp MVVSVKVFKKATPNGKVTFYLGRRDFIDHIDYCDPVDGVIVVEPDYLKNR KVFGQLATTYRYGREEDEVMGVKFSKELILCREQIVPMTNPNMEMTPMQE KLVRKLGSNAYPFTFHFPPNSPSSVTLQQEGDDNGKPLGVEYTIRAFVGD SEDDRQHKRSMVSLVIKKLQYAPLNRGQRLPSSLVSKGFTFSNGKISLEV TLDREIYYHGEKTAATVQVSNNSKKSVKSIKCFIVQHTEITMVNAQFSKH VAQLETKEGCPITPGANLTKTFYLIPLAANNKDRHGIALDGHLKDEDVNL ASSTMVQEGKSTGDACGIVISYSVRIKLNCGTLGGEMQTDVPFKLLQPAP GTIEKKRSNAMKKMKSIEQHRNVKGYYQDDDDNIVFEDFAKMRMNNVNMA D*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arr2-PA | 401 | CG5962-PA | 1..401 | 1..401 | 2086 | 100 | Plus |
Arr1-PB | 364 | CG5711-PB | 1..350 | 1..350 | 898 | 46.9 | Plus |
Arr1-PA | 364 | CG5711-PA | 1..350 | 1..350 | 898 | 46.9 | Plus |
krz-PB | 470 | CG1487-PB | 46..463 | 4..394 | 880 | 43.3 | Plus |
krz-PA | 470 | CG1487-PA | 46..463 | 4..394 | 880 | 43.3 | Plus |