Clone RH02643 Report

Search the DGRC for RH02643

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:26
Well:43
Vector:pFlc-1
Associated Gene/TranscriptCanB-RA
Protein status:RH02643.pep: gold
Preliminary Size:1176
Sequenced Size:1235

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4209 2001-12-13 Blastp of sequenced clone
CG4209 2002-01-01 Sim4 clustering to Release 2
CG4209 2003-01-01 Sim4 clustering to Release 3
CanB 2008-04-29 Release 5.5 accounting
CanB 2008-08-15 Release 5.9 accounting
CanB 2008-12-18 5.12 accounting

Clone Sequence Records

RH02643.complete Sequence

1235 bp (1235 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070642

> RH02643.complete
GAGTCGTGTATTTGCTGTCGAGCGAGTAGAGAGCTTTTTTTTTGGGAATT
TAACAATCCAGCGCAACTATTGTTTATTTATGAGCGTGCCAGTCGTTGAA
AAATTGAGTTATTAACAACAAAAATTTTGGATCTAGACCAGAGAACTAAG
TAACCAAAGGCCAGCATGGGTAACGAGACCTCCCTGCCCATGGACATGTG
TTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGCA
AGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTCG
CTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCTT
CGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGAG
TGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGCC
TTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAACT
CTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAGC
TGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGAT
GGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATAT
TCACAAGAAAATGGTTGTCGATGTTTAGATTGAGCCACATAATGAGTACT
ATATATATACAATTGTAGATATGATACAATATGTATAGCCGATTTTCCGT
AATGAGTGTGTGTGTGTGTGTGTGTACCTTCACTTCCCTTGAAACATGTT
CAGCTTTATAATAAACGGTCTGTCTGTGAGTCTGTGAGGGCGTTTGAGGC
GTGCCAAAAACGAAGCAGTTTACTCAATTTATTGATACCTATCGCATATA
TATAGAGTACACTTTGTTCCAAACGATCCAAACCGATCGATCTCTATCAT
CCACAGAATGCAATGAATTGTGTCTTATACTCATACTTGAAACCACCGGC
AACGGACCACTCAACCAAAGAACTCATCTATACCCCTCCTTCCATTCCTC
CTTCCATTCGAAATGACATACTTTCGAGGTTCGAACAGCTCTACGATTGG
GATTGTTCGCATCATCTTAAACTAGTTTGTACTATATCCTAAACTCTACG
TTCAATTCAAGCCTAACACTTAAGTTCATCTCTCGACTAAATGTTGTGTA
TAAGATATGTAAAAAAACCAAAAAAAAAAAAAAAA

RH02643.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RA 1458 CanB-RA 138..1371 2..1235 6155 99.9 Plus
CanB.a 1363 CanB.a 123..1276 82..1235 5755 99.9 Plus
CanB2.b 1458 CanB2.b 328..670 166..508 935 84.8 Plus
CanB2.b 1458 CanB2.b 734..894 514..674 490 86.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5225921..5227008 130..1217 5380 99.6 Plus
chr2R 21145070 chr2R 3674555..3674854 209..508 810 84.7 Plus
chr2R 21145070 chr2R 3674918..3675078 514..674 490 87 Plus
chrX 22417052 chrX 5225298..5225378 2..82 405 100 Plus
chrX 22417052 chrX 5225604..5225652 82..130 245 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5333369..5334474 130..1235 5515 99.9 Plus
2R 25286936 2R 7787234..7787533 209..508 825 85 Plus
2R 25286936 2R 7787597..7787757 514..674 490 87 Plus
X 23542271 X 5332747..5332827 2..82 405 100 Plus
X 23542271 X 5333052..5333100 82..130 245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5341467..5342572 130..1235 5515 99.9 Plus
2R 25260384 2R 7788433..7788732 209..508 825 85 Plus
2R 25260384 2R 7788796..7788956 514..674 490 86.9 Plus
X 23527363 X 5340845..5340925 2..82 405 100 Plus
X 23527363 X 5341150..5341198 82..130 245 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:02:22 has no hits.

RH02643.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:03:32 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5225296..5225378 1..82 98 -> Plus
chrX 5225605..5225652 83..130 100 -> Plus
chrX 5225922..5227010 131..1219 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:31 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..513 166..678 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:45 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..513 166..678 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:36 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..513 166..678 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:41:53 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..513 166..678 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:58 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..513 166..678 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:47:44 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..1220 1..1219 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:45 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..1220 1..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:36 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 4..1214 1..1210 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:41:53 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..1220 1..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:58 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 4..1214 1..1210 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:32 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
X 5332745..5332827 1..82 98 -> Plus
X 5333053..5333100 83..130 100 -> Plus
X 5333370..5334458 131..1219 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:32 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
X 5332745..5332827 1..82 98 -> Plus
X 5333053..5333100 83..130 100 -> Plus
X 5333370..5334458 131..1219 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:32 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
X 5332745..5332827 1..82 98 -> Plus
X 5333053..5333100 83..130 100 -> Plus
X 5333370..5334458 131..1219 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:36 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5226778..5226860 1..82 98 -> Plus
arm_X 5227086..5227133 83..130 100 -> Plus
arm_X 5227403..5228491 131..1219 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:51 Download gff for RH02643.complete
Subject Subject Range Query Range Percent Splice Strand
X 5341468..5342556 131..1219 99   Plus
X 5340843..5340925 1..82 98 -> Plus
X 5341151..5341198 83..130 100 -> Plus

RH02643.pep Sequence

Translation from 165 to 677

> RH02643.pep
MGNETSLPMDMCSNFDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVRGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTICFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDV*

RH02643.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19757-PA 170 GF19757-PA 1..170 1..170 878 100 Plus
Dana\GF13200-PA 170 GF13200-PA 1..170 1..170 859 97.6 Plus
Dana\GF17404-PA 189 GF17404-PA 1..185 1..168 308 38.9 Plus
Dana\GF12205-PA 189 GF12205-PA 19..175 12..157 255 36.9 Plus
Dana\GF12835-PA 149 GF12835-PA 1..146 11..157 184 31.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18755-PA 170 GG18755-PA 1..170 1..170 878 100 Plus
Dere\GG23301-PA 170 GG23301-PA 1..170 1..170 859 97.6 Plus
Dere\GG10903-PA 189 GG10903-PA 1..185 1..168 308 38.9 Plus
Dere\GG16076-PA 190 GG16076-PA 40..169 35..153 187 34.4 Plus
Dere\GG22065-PA 166 GG22065-PA 55..152 60..157 185 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24615-PA 170 GH24615-PA 1..170 1..170 878 100 Plus
Dgri\GH20317-PA 162 GH20317-PA 1..162 9..170 814 97.5 Plus
Dgri\GH19192-PA 189 GH19192-PA 1..185 1..168 298 37.8 Plus
Dgri\GH22004-PA 189 GH22004-PA 19..175 12..157 250 36.9 Plus
Dgri\GH14390-PA 190 GH14390-PA 40..169 35..153 191 35.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-PB 170 CG4209-PB 1..170 1..170 878 100 Plus
CanB-PA 170 CG4209-PA 1..170 1..170 878 100 Plus
CanB2-PB 170 CG11217-PB 1..170 1..170 858 97.6 Plus
CanB2-PA 170 CG11217-PA 1..170 1..170 858 97.6 Plus
elm-PB 189 CG2185-PB 1..185 1..168 311 38.9 Plus
elm-PA 189 CG2185-PA 1..185 1..168 311 38.9 Plus
Cib2-PB 189 CG9236-PB 19..175 12..157 254 36.9 Plus
Cam-PD 149 CG8472-PD 1..146 11..157 190 31.8 Plus
Cam-PC 149 CG8472-PC 1..146 11..157 190 31.8 Plus
Cam-PE 149 CG8472-PE 1..146 11..157 190 31.8 Plus
Cam-PB 149 CG8472-PB 1..146 11..157 190 31.8 Plus
Cam-PA 149 CG8472-PA 1..146 11..157 190 31.8 Plus
Frq1-PE 187 CG5744-PE 22..168 15..153 187 34.7 Plus
Frq1-PD 187 CG5744-PD 22..168 15..153 187 34.7 Plus
Frq1-PC 187 CG5744-PC 22..168 15..153 187 34.7 Plus
Frq1-PB 187 CG5744-PB 22..168 15..153 187 34.7 Plus
Nca-PA 190 CG7641-PA 40..169 35..153 187 35.1 Plus
CG31960-PA 148 CG31960-PA 1..145 9..157 179 33.3 Plus
Nox-PB 1282 CG34399-PB 323..462 13..151 179 31 Plus
Nox-PE 1340 CG34399-PE 323..462 13..151 179 31 Plus
Nox-PD 1340 CG34399-PD 323..462 13..151 179 31 Plus
Nox-PC 1340 CG34399-PC 323..462 13..151 179 31 Plus
Frq2-PD 187 CG5907-PD 22..168 15..153 177 34 Plus
Frq2-PC 187 CG5907-PC 22..168 15..153 177 34 Plus
Frq2-PB 187 CG5907-PB 22..168 15..153 177 34 Plus
Frq2-PA 187 CG5907-PA 22..168 15..153 177 34 Plus
TpnC47D-PB 155 CG9073-PB 11..152 18..157 164 30.6 Plus
TpnC47D-PA 155 CG9073-PA 11..152 18..157 164 30.6 Plus
azot-PA 148 CG11165-PA 16..145 27..157 160 31.9 Plus
CG11638-PA 387 CG11638-PA 210..359 19..161 160 28.4 Plus
TpnC41C-PB 154 CG2981-PB 52..153 58..161 150 33.6 Plus
TpnC41C-PA 154 CG2981-PA 52..153 58..161 150 33.6 Plus
Acam-PB 148 CG17769-PB 2..141 13..153 145 29.7 Plus
Acam-PA 148 CG17769-PA 2..141 13..153 145 29.7 Plus
TpnC4-PB 153 CG12408-PB 6..151 15..157 144 27.8 Plus
TpnC4-PA 153 CG12408-PA 6..151 15..157 144 27.8 Plus
Eip63F-1-PD 166 CG15855-PD 7..161 17..153 139 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11077-PA 170 GI11077-PA 1..170 1..170 878 100 Plus
Dmoj\GI19990-PA 160 GI19990-PA 1..160 11..170 807 98.1 Plus
Dmoj\GI24225-PA 189 GI24225-PA 1..185 1..168 303 38.4 Plus
Dmoj\GI19707-PA 189 GI19707-PA 19..175 12..157 249 36.9 Plus
Dmoj\GI11334-PA 190 GI11334-PA 40..169 35..153 191 35.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14682-PA 170 GL14682-PA 1..170 1..170 878 100 Plus
Dper\GL10837-PA 170 GL10837-PA 1..170 1..170 859 97.6 Plus
Dper\GL23144-PA 189 GL23144-PA 1..185 1..168 301 38.4 Plus
Dper\GL17058-PA 189 GL17058-PA 19..175 12..157 254 36.9 Plus
Dper\GL11894-PA 190 GL11894-PA 40..169 35..153 187 34.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18033-PA 170 GA18033-PA 1..170 1..170 878 100 Plus
Dpse\GA24505-PA 305 GA24505-PA 145..305 10..170 796 95.7 Plus
Dpse\GA27156-PA 189 GA27156-PA 1..185 1..168 301 38.4 Plus
Dpse\GA21632-PA 189 GA21632-PA 19..175 12..157 254 36.9 Plus
Dpse\GA24499-PA 149 GA24499-PA 1..146 11..157 184 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12403-PA 170 GM12403-PA 1..170 1..170 878 100 Plus
Dsec\GM20979-PA 170 GM20979-PA 1..170 1..170 859 97.6 Plus
Dsec\GM15782-PA 206 GM15782-PA 45..192 12..157 212 35 Plus
Dsec\GM10604-PA 105 GM10604-PA 24..101 91..168 193 48.7 Plus
Dsec\GM19732-PA 190 GM19732-PA 40..169 35..153 187 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15356-PA 170 GD15356-PA 1..170 1..170 859 97.6 Plus
Dsim\GD10507-PA 170 GD10507-PA 1..170 1..170 859 97.6 Plus
Dsim\GD19593-PA 189 GD19593-PA 1..185 1..168 302 38.4 Plus
Dsim\GD11545-PA 206 GD11545-PA 45..192 12..157 212 35 Plus
Dsim\GD14847-PA 190 GD14847-PA 40..169 35..153 187 34.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14779-PA 170 GJ14779-PA 1..170 1..170 878 100 Plus
Dvir\GJ21239-PA 177 GJ21239-PA 9..177 2..170 851 97 Plus
Dvir\GJ10797-PA 189 GJ10797-PA 1..185 1..168 301 38.4 Plus
Dvir\GJ17436-PA 189 GJ17436-PA 19..175 12..157 249 36.9 Plus
Dvir\GJ11590-PA 190 GJ11590-PA 40..169 35..153 187 34.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10056-PA 170 GK10056-PA 1..170 1..170 878 100 Plus
Dwil\GK21716-PA 170 GK21716-PA 1..170 1..170 859 97.6 Plus
Dwil\GK10850-PA 189 GK10850-PA 21..185 13..168 302 40 Plus
Dwil\GK23329-PA 188 GK23329-PA 19..174 12..157 251 36.5 Plus
Dwil\GK20284-PA 190 GK20284-PA 40..169 35..153 187 34.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16397-PA 170 GE16397-PA 1..170 1..170 878 100 Plus
Dyak\GE19147-PA 170 GE19147-PA 1..170 1..170 859 97.6 Plus
Dyak\GE24150-PA 189 GE24150-PA 1..185 1..168 308 38.9 Plus
Dyak\GE19642-PA 190 GE19642-PA 40..169 35..153 187 34.4 Plus
Dyak\GE23224-PA 190 GE23224-PA 40..169 35..153 187 34.4 Plus

RH02643.hyp Sequence

Translation from 165 to 677

> RH02643.hyp
MGNETSLPMDMCSNFDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVRGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTICFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDV*

RH02643.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-PB 170 CG4209-PB 1..170 1..170 878 100 Plus
CanB-PA 170 CG4209-PA 1..170 1..170 878 100 Plus
CanB2-PB 170 CG11217-PB 1..170 1..170 858 97.6 Plus
CanB2-PA 170 CG11217-PA 1..170 1..170 858 97.6 Plus
elm-PB 189 CG2185-PB 1..185 1..168 311 38.9 Plus