Clone RH02809 Report

Search the DGRC for RH02809

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:28
Well:9
Vector:pFlc-1
Associated Gene/Transcriptstai-RC
Protein status:RH02809.pep: gold
Sequenced Size:1824

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31641 2002-10-24 Blastp of sequenced clone
stai 2008-04-29 Release 5.5 accounting
stai 2008-08-15 Release 5.9 accounting
stai 2008-12-18 5.12 accounting

Clone Sequence Records

RH02809.complete Sequence

1824 bp (1824 high quality bases) assembled on 2002-10-24

GenBank Submission: BT001751

> RH02809.complete
GATTCGCTTAATTTTCGCCGACGCGATCACAACTGTAAAAAACAACTGCC
GAAGTTCTCGCACCGTATTTTAACTGTTAACAATTCAAAAGTGTCCAGTG
TGTCTATCGTTATTTGAATGCTATTATTAACTGTACATGTGCTAACTTAT
TTCATTGGAAAGCAATCTACAGAGCTTTAGTTGTGATACCCCATTTAGTT
TCTGTAACATTTTTAATTTCTTTCGAGTCCGAAACAACAGAATTTTAAAA
TGGTGAACAACACTGTTGATACTGAAGCCACAGAGATTCGCTGCCAGGAG
AAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCACC
CAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAGCG
TCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTTCT
CTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTCGA
GGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCAGA
CCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAGAG
GCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGATAT
CGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAAGG
CAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATATC
AAGAAAATGTTGGATCGCCTAAAGGAGCATAACACAATCAAAATTGCCGA
AATCAAATCGCAGAACGATCAATTGGAATGTCAAAAGATCGAGGAGAAAG
CGCGCATTTATGAGAACAAATTGTTCGCCGCCGAGCAGAAACGCGAAAAG
GAATTGCAAAAAAAAATTGAAAAAGTTCAAAAACTCGAACGTCGCGCTGA
GCTCGTGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGA
GCGCCATTGCCTCCTCAGGCTAAGTGGAGAACGATCCTGCATCGAGAGCT
GTGCTCACCCACTGCAAACATGGTTACAAGGCGACTACAAAAAGAACAGC
AACACTGCATAATACACCAACACATATTTAAGCAAGAAAACCCTTAAAAC
TGAAAACGATTTCTCAAAATTTCCAAGTATTATGAAAGCAAACGAAGCGA
AGGGCAAGGGCAAAGTCTCAAGATACCGCTGAGCGAGTTTTCTCACGAGC
TCTATAATGAAACACGAATAAGCTACTATAAAGCGAAAAGAAATGAATGC
TTACGGCAAGTTAATGCAAAAAAAAAATTAGTAAAGGAAATCTACATTTA
AACTTAAAAGCCCAGGCAGAAAAGCCTATGCAAGTTGAATGCATGCCTGT
CATTTAAAATTTCAAATTCTTTTAAAAGTTCACGTTGATTTCAGTTGAAA
GTTTAAAACACTTTTTACCTTGAGTTCCAAGAATGTTATATTCGTTTTGG
ATTCATTATTTTCAAAGTCTTAGTCTTGAATGTTCAAGTTTTTTTTTTTT
TTAATTACTGTGGCATCGACTGAGGTATTCTCAAAATAATAAGCACGCTG
TATTTGCATCTATGAATGGCTTTCGCGAGTAAAAATTTGAAAATGTTTTT
AATTAAGTTAATGTATACTTTAGTGGTAATTTTAATTTACTAACTTGCAA
CAACATGATACATATACATGCTGAATATAGTTTTACACTAACAAATAATT
TGTTCTTATAAGTTTCGCATTTTCTATCTATAAAATAAATGTCTAACAGA
AAAAATACAAAAAAAAAAAAAAAA

RH02809.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
stai-RC 2174 stai-RC 118..1933 2..1816 9010 99.8 Plus
stai.d 2804 stai.d 118..1933 2..1816 9010 99.8 Plus
stai.a 1995 stai.a 874..1754 937..1816 4335 99.6 Plus
stai.a 1995 stai.a 95..873 2..780 3895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6122029..6122901 937..1808 4315 99.9 Plus
chr2L 23010047 chr2L 6121056..6121241 448..633 930 100 Plus
chr2L 23010047 chr2L 6120823..6120994 276..447 860 100 Plus
chr2L 23010047 chr2L 6099430..6099600 2..172 855 100 Plus
chr2L 23010047 chr2L 6121749..6121910 781..942 795 99.4 Plus
chr2L 23010047 chr2L 6121311..6121461 630..780 755 100 Plus
chr2L 23010047 chr2L 6100742..6100849 170..277 540 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122978..6123858 937..1816 4325 99.7 Plus
2L 23513712 2L 6122005..6122190 448..633 930 100 Plus
2L 23513712 2L 6121772..6121943 276..447 860 100 Plus
2L 23513712 2L 6100379..6100549 2..172 855 100 Plus
2L 23513712 2L 6122698..6122859 781..942 795 99.4 Plus
2L 23513712 2L 6122260..6122410 630..780 755 100 Plus
2L 23513712 2L 6101691..6101798 170..277 540 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122978..6123858 937..1816 4335 99.6 Plus
2L 23513712 2L 6122005..6122190 448..633 930 100 Plus
2L 23513712 2L 6121772..6121943 276..447 860 100 Plus
2L 23513712 2L 6100379..6100549 2..172 855 100 Plus
2L 23513712 2L 6122698..6122859 781..942 795 99.3 Plus
2L 23513712 2L 6122260..6122410 630..780 755 100 Plus
2L 23513712 2L 6101691..6101798 170..277 540 100 Plus
Blast to na_te.dros performed 2019-03-16 14:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 749..925 1626..1801 162 57.8 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 755..976 1254..1473 114 51.4 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 5062..5103 1774..1732 113 76.7 Minus

RH02809.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:18:28 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6121315..6121461 634..780 100 -> Plus
chr2L 6121749..6121904 781..936 100 -> Plus
chr2L 6120825..6120994 278..447 100 -> Plus
chr2L 6121056..6121241 448..633 100 -> Plus
chr2L 6099429..6099600 1..172 99 -> Plus
chr2L 6100745..6100849 173..277 100 -> Plus
chr2L 6122029..6122901 937..1808 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:32:50 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 1..774 250..1023 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:06 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 1..774 250..1023 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:40:16 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 1..774 250..1023 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:02 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 1..774 250..1023 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:47 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 1..774 250..1023 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:32:50 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 2..1809 2..1808 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:06 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 2..1809 2..1808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:40:16 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 2..1810 1..1808 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:02 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 2..1809 2..1808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:47 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RC 2..1810 1..1808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:28 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6100378..6100549 1..172 99 -> Plus
2L 6101694..6101798 173..277 100 -> Plus
2L 6121774..6121943 278..447 100 -> Plus
2L 6122005..6122190 448..633 100 -> Plus
2L 6122264..6122410 634..780 100 -> Plus
2L 6122698..6122853 781..936 100 -> Plus
2L 6122978..6123850 937..1808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:28 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6100378..6100549 1..172 99 -> Plus
2L 6101694..6101798 173..277 100 -> Plus
2L 6121774..6121943 278..447 100 -> Plus
2L 6122005..6122190 448..633 100 -> Plus
2L 6122264..6122410 634..780 100 -> Plus
2L 6122698..6122853 781..936 100 -> Plus
2L 6122978..6123850 937..1808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:28 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6100378..6100549 1..172 99 -> Plus
2L 6101694..6101798 173..277 100 -> Plus
2L 6121774..6121943 278..447 100 -> Plus
2L 6122005..6122190 448..633 100 -> Plus
2L 6122264..6122410 634..780 100 -> Plus
2L 6122698..6122853 781..936 100 -> Plus
2L 6122978..6123850 937..1808 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:40:16 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6100378..6100549 1..172 99 -> Plus
arm_2L 6101694..6101798 173..277 100 -> Plus
arm_2L 6121774..6121943 278..447 100 -> Plus
arm_2L 6122005..6122190 448..633 100 -> Plus
arm_2L 6122264..6122410 634..780 100 -> Plus
arm_2L 6122698..6122853 781..936 100 -> Plus
arm_2L 6122978..6123850 937..1808 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:30 Download gff for RH02809.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6122978..6123850 937..1808 99   Plus
2L 6100378..6100549 1..172 99 -> Plus
2L 6101694..6101798 173..277 100 -> Plus
2L 6121774..6121943 278..447 100 -> Plus
2L 6122005..6122190 448..633 100 -> Plus
2L 6122264..6122410 634..780 100 -> Plus
2L 6122698..6122853 781..936 100 -> Plus

RH02809.pep Sequence

Translation from 249 to 1022

> RH02809.pep
MVNNTVDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVS
VEEIEQKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQ
TKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQK
AIEEKLKIAQSLRDENIKKMLDRLKEHNTIKIAEIKSQNDQLECQKIEEK
ARIYENKLFAAEQKREKELQKKIEKVQKLERRAELVRQNKAQAQDLDGQQ
SAIASSG*

RH02809.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14505-PA 302 GF14505-PA 56..302 11..257 1193 96 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10389-PA 302 GG10389-PA 56..302 11..257 1212 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10808-PA 303 GH10808-PA 47..303 2..257 1123 89.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
stai-PC 257 CG31641-PC 1..257 1..257 1256 100 Plus
stai-PD 381 CG31641-PD 134..381 10..257 1210 100 Plus
stai-PE 302 CG31641-PE 56..302 11..257 1206 100 Plus
stai-PB 302 CG31641-PB 56..302 11..257 1206 100 Plus
stai-PA 250 CG31641-PA 56..250 11..257 850 76.5 Plus
rudhira-PE 2075 CG43154-PE 1382..1624 12..245 158 23.3 Plus
rudhira-PC 2075 CG43154-PC 1382..1624 12..245 158 23.3 Plus
rudhira-PE 2075 CG43154-PE 1348..1594 40..250 155 25.5 Plus
rudhira-PC 2075 CG43154-PC 1348..1594 40..250 155 25.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17318-PA 302 GI17318-PA 47..302 2..257 1117 87.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19068-PA 302 GL19068-PA 47..302 2..257 1170 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16358-PA 302 GA16358-PA 47..302 2..257 1170 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18605-PA 285 GM18605-PA 1..285 1..257 1247 89.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15867-PA 397 GJ15867-PA 47..294 2..249 1080 87.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14732-PA 302 GK14732-PA 47..302 2..257 1160 91.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\stai-PA 302 GE13648-PA 56..302 11..257 1213 98 Plus

RH02809.hyp Sequence

Translation from 249 to 1022

> RH02809.hyp
MVNNTVDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVS
VEEIEQKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQ
TKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQK
AIEEKLKIAQSLRDENIKKMLDRLKEHNTIKIAEIKSQNDQLECQKIEEK
ARIYENKLFAAEQKREKELQKKIEKVQKLERRAELVRQNKAQAQDLDGQQ
SAIASSG*

RH02809.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
stai-PC 257 CG31641-PC 1..257 1..257 1256 100 Plus
stai-PD 381 CG31641-PD 134..381 10..257 1210 100 Plus
stai-PE 302 CG31641-PE 56..302 11..257 1206 100 Plus
stai-PB 302 CG31641-PB 56..302 11..257 1206 100 Plus
stai-PA 250 CG31641-PA 56..250 11..257 850 76.5 Plus