BDGP Sequence Production Resources |
Search the DGRC for RH02809
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 28 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | stai-RC |
Protein status: | RH02809.pep: gold |
Sequenced Size: | 1824 |
Gene | Date | Evidence |
---|---|---|
CG31641 | 2002-10-24 | Blastp of sequenced clone |
stai | 2008-04-29 | Release 5.5 accounting |
stai | 2008-08-15 | Release 5.9 accounting |
stai | 2008-12-18 | 5.12 accounting |
1824 bp (1824 high quality bases) assembled on 2002-10-24
GenBank Submission: BT001751
> RH02809.complete GATTCGCTTAATTTTCGCCGACGCGATCACAACTGTAAAAAACAACTGCC GAAGTTCTCGCACCGTATTTTAACTGTTAACAATTCAAAAGTGTCCAGTG TGTCTATCGTTATTTGAATGCTATTATTAACTGTACATGTGCTAACTTAT TTCATTGGAAAGCAATCTACAGAGCTTTAGTTGTGATACCCCATTTAGTT TCTGTAACATTTTTAATTTCTTTCGAGTCCGAAACAACAGAATTTTAAAA TGGTGAACAACACTGTTGATACTGAAGCCACAGAGATTCGCTGCCAGGAG AAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCACC CAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAGCG TCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTTCT CTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTCGA GGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCAGA CCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAGAG GCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGATAT CGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAAGG CAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATATC AAGAAAATGTTGGATCGCCTAAAGGAGCATAACACAATCAAAATTGCCGA AATCAAATCGCAGAACGATCAATTGGAATGTCAAAAGATCGAGGAGAAAG CGCGCATTTATGAGAACAAATTGTTCGCCGCCGAGCAGAAACGCGAAAAG GAATTGCAAAAAAAAATTGAAAAAGTTCAAAAACTCGAACGTCGCGCTGA GCTCGTGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGA GCGCCATTGCCTCCTCAGGCTAAGTGGAGAACGATCCTGCATCGAGAGCT GTGCTCACCCACTGCAAACATGGTTACAAGGCGACTACAAAAAGAACAGC AACACTGCATAATACACCAACACATATTTAAGCAAGAAAACCCTTAAAAC TGAAAACGATTTCTCAAAATTTCCAAGTATTATGAAAGCAAACGAAGCGA AGGGCAAGGGCAAAGTCTCAAGATACCGCTGAGCGAGTTTTCTCACGAGC TCTATAATGAAACACGAATAAGCTACTATAAAGCGAAAAGAAATGAATGC TTACGGCAAGTTAATGCAAAAAAAAAATTAGTAAAGGAAATCTACATTTA AACTTAAAAGCCCAGGCAGAAAAGCCTATGCAAGTTGAATGCATGCCTGT CATTTAAAATTTCAAATTCTTTTAAAAGTTCACGTTGATTTCAGTTGAAA GTTTAAAACACTTTTTACCTTGAGTTCCAAGAATGTTATATTCGTTTTGG ATTCATTATTTTCAAAGTCTTAGTCTTGAATGTTCAAGTTTTTTTTTTTT TTAATTACTGTGGCATCGACTGAGGTATTCTCAAAATAATAAGCACGCTG TATTTGCATCTATGAATGGCTTTCGCGAGTAAAAATTTGAAAATGTTTTT AATTAAGTTAATGTATACTTTAGTGGTAATTTTAATTTACTAACTTGCAA CAACATGATACATATACATGCTGAATATAGTTTTACACTAACAAATAATT TGTTCTTATAAGTTTCGCATTTTCTATCTATAAAATAAATGTCTAACAGA AAAAATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stai-RC | 2174 | stai-RC | 118..1933 | 2..1816 | 9010 | 99.8 | Plus |
stai.d | 2804 | stai.d | 118..1933 | 2..1816 | 9010 | 99.8 | Plus |
stai.a | 1995 | stai.a | 874..1754 | 937..1816 | 4335 | 99.6 | Plus |
stai.a | 1995 | stai.a | 95..873 | 2..780 | 3895 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6122029..6122901 | 937..1808 | 4315 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 6121056..6121241 | 448..633 | 930 | 100 | Plus |
chr2L | 23010047 | chr2L | 6120823..6120994 | 276..447 | 860 | 100 | Plus |
chr2L | 23010047 | chr2L | 6099430..6099600 | 2..172 | 855 | 100 | Plus |
chr2L | 23010047 | chr2L | 6121749..6121910 | 781..942 | 795 | 99.4 | Plus |
chr2L | 23010047 | chr2L | 6121311..6121461 | 630..780 | 755 | 100 | Plus |
chr2L | 23010047 | chr2L | 6100742..6100849 | 170..277 | 540 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6122978..6123858 | 937..1816 | 4325 | 99.7 | Plus |
2L | 23513712 | 2L | 6122005..6122190 | 448..633 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121772..6121943 | 276..447 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6100379..6100549 | 2..172 | 855 | 100 | Plus |
2L | 23513712 | 2L | 6122698..6122859 | 781..942 | 795 | 99.4 | Plus |
2L | 23513712 | 2L | 6122260..6122410 | 630..780 | 755 | 100 | Plus |
2L | 23513712 | 2L | 6101691..6101798 | 170..277 | 540 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6122978..6123858 | 937..1816 | 4335 | 99.6 | Plus |
2L | 23513712 | 2L | 6122005..6122190 | 448..633 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121772..6121943 | 276..447 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6100379..6100549 | 2..172 | 855 | 100 | Plus |
2L | 23513712 | 2L | 6122698..6122859 | 781..942 | 795 | 99.3 | Plus |
2L | 23513712 | 2L | 6122260..6122410 | 630..780 | 755 | 100 | Plus |
2L | 23513712 | 2L | 6101691..6101798 | 170..277 | 540 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 749..925 | 1626..1801 | 162 | 57.8 | Plus |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 755..976 | 1254..1473 | 114 | 51.4 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 5062..5103 | 1774..1732 | 113 | 76.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6121315..6121461 | 634..780 | 100 | -> | Plus |
chr2L | 6121749..6121904 | 781..936 | 100 | -> | Plus |
chr2L | 6120825..6120994 | 278..447 | 100 | -> | Plus |
chr2L | 6121056..6121241 | 448..633 | 100 | -> | Plus |
chr2L | 6099429..6099600 | 1..172 | 99 | -> | Plus |
chr2L | 6100745..6100849 | 173..277 | 100 | -> | Plus |
chr2L | 6122029..6122901 | 937..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 1..774 | 250..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 1..774 | 250..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 1..774 | 250..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 1..774 | 250..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 1..774 | 250..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 2..1809 | 2..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 2..1809 | 2..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 2..1810 | 1..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 2..1809 | 2..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stai-RC | 2..1810 | 1..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6100378..6100549 | 1..172 | 99 | -> | Plus |
2L | 6101694..6101798 | 173..277 | 100 | -> | Plus |
2L | 6121774..6121943 | 278..447 | 100 | -> | Plus |
2L | 6122005..6122190 | 448..633 | 100 | -> | Plus |
2L | 6122264..6122410 | 634..780 | 100 | -> | Plus |
2L | 6122698..6122853 | 781..936 | 100 | -> | Plus |
2L | 6122978..6123850 | 937..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6100378..6100549 | 1..172 | 99 | -> | Plus |
2L | 6101694..6101798 | 173..277 | 100 | -> | Plus |
2L | 6121774..6121943 | 278..447 | 100 | -> | Plus |
2L | 6122005..6122190 | 448..633 | 100 | -> | Plus |
2L | 6122264..6122410 | 634..780 | 100 | -> | Plus |
2L | 6122698..6122853 | 781..936 | 100 | -> | Plus |
2L | 6122978..6123850 | 937..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6100378..6100549 | 1..172 | 99 | -> | Plus |
2L | 6101694..6101798 | 173..277 | 100 | -> | Plus |
2L | 6121774..6121943 | 278..447 | 100 | -> | Plus |
2L | 6122005..6122190 | 448..633 | 100 | -> | Plus |
2L | 6122264..6122410 | 634..780 | 100 | -> | Plus |
2L | 6122698..6122853 | 781..936 | 100 | -> | Plus |
2L | 6122978..6123850 | 937..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6100378..6100549 | 1..172 | 99 | -> | Plus |
arm_2L | 6101694..6101798 | 173..277 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 278..447 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 448..633 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 634..780 | 100 | -> | Plus |
arm_2L | 6122698..6122853 | 781..936 | 100 | -> | Plus |
arm_2L | 6122978..6123850 | 937..1808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6122978..6123850 | 937..1808 | 99 | Plus | |
2L | 6100378..6100549 | 1..172 | 99 | -> | Plus |
2L | 6101694..6101798 | 173..277 | 100 | -> | Plus |
2L | 6121774..6121943 | 278..447 | 100 | -> | Plus |
2L | 6122005..6122190 | 448..633 | 100 | -> | Plus |
2L | 6122264..6122410 | 634..780 | 100 | -> | Plus |
2L | 6122698..6122853 | 781..936 | 100 | -> | Plus |
Translation from 249 to 1022
> RH02809.pep MVNNTVDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVS VEEIEQKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQ TKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQK AIEEKLKIAQSLRDENIKKMLDRLKEHNTIKIAEIKSQNDQLECQKIEEK ARIYENKLFAAEQKREKELQKKIEKVQKLERRAELVRQNKAQAQDLDGQQ SAIASSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14505-PA | 302 | GF14505-PA | 56..302 | 11..257 | 1193 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10389-PA | 302 | GG10389-PA | 56..302 | 11..257 | 1212 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10808-PA | 303 | GH10808-PA | 47..303 | 2..257 | 1123 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stai-PC | 257 | CG31641-PC | 1..257 | 1..257 | 1256 | 100 | Plus |
stai-PD | 381 | CG31641-PD | 134..381 | 10..257 | 1210 | 100 | Plus |
stai-PE | 302 | CG31641-PE | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PB | 302 | CG31641-PB | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PA | 250 | CG31641-PA | 56..250 | 11..257 | 850 | 76.5 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1382..1624 | 12..245 | 158 | 23.3 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1382..1624 | 12..245 | 158 | 23.3 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1348..1594 | 40..250 | 155 | 25.5 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1348..1594 | 40..250 | 155 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17318-PA | 302 | GI17318-PA | 47..302 | 2..257 | 1117 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19068-PA | 302 | GL19068-PA | 47..302 | 2..257 | 1170 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16358-PA | 302 | GA16358-PA | 47..302 | 2..257 | 1170 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18605-PA | 285 | GM18605-PA | 1..285 | 1..257 | 1247 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15867-PA | 397 | GJ15867-PA | 47..294 | 2..249 | 1080 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14732-PA | 302 | GK14732-PA | 47..302 | 2..257 | 1160 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\stai-PA | 302 | GE13648-PA | 56..302 | 11..257 | 1213 | 98 | Plus |
Translation from 249 to 1022
> RH02809.hyp MVNNTVDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVS VEEIEQKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQ TKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQK AIEEKLKIAQSLRDENIKKMLDRLKEHNTIKIAEIKSQNDQLECQKIEEK ARIYENKLFAAEQKREKELQKKIEKVQKLERRAELVRQNKAQAQDLDGQQ SAIASSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stai-PC | 257 | CG31641-PC | 1..257 | 1..257 | 1256 | 100 | Plus |
stai-PD | 381 | CG31641-PD | 134..381 | 10..257 | 1210 | 100 | Plus |
stai-PE | 302 | CG31641-PE | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PB | 302 | CG31641-PB | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PA | 250 | CG31641-PA | 56..250 | 11..257 | 850 | 76.5 | Plus |