Clone RH03309 Report

Search the DGRC for RH03309

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:33
Well:9
Vector:pFlc-1
Associated Gene/TranscriptCG40485-RB
Protein status:RH03309.pep: gold
Sequenced Size:1467

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13356 2002-01-01 Sim4 clustering to Release 2
CG40485 2008-04-29 Release 5.5 accounting
CG40485 2008-08-15 Release 5.9 accounting
CG40485 2008-12-18 5.12 accounting

Clone Sequence Records

RH03309.complete Sequence

1467 bp (1467 high quality bases) assembled on 2003-08-25

GenBank Submission: BT011176

> RH03309.complete
GATTTTGACTCACAGTCGCCGGCATGGAACGTTGGCATAACTGCGTAGCA
GTGGTGACCGGAGCCAGTTCGGGAATCGGAGCGGCAATCACCCGAAAACT
GATCTCCGCTGGCGTCATGGTGGTTGCCCTGGCCCGTCGAATGGACCGCT
TGGAGCAATTGCGTGAGGAGCTGCCGCAGGATCGGCGATCGCGATTGCGT
ATAATGCAGTGCGATGTTTCGGATGTGTCATCCGTAAACGCGGTCTTTGA
CGCGGTGCAGGGGGATCTGGGCAACGTGGACATTCTTATCAATAACGCCG
GAAAGCTGTCCGGTGGACAGCTGCTGACTATGTCGGTAGACACTGTGCAG
CAGATGCTGCAGACGAATGTAATGGGCGTGGTCTACTGCACCCAGCGCGC
CTTTGAATCGATGCGGCAGCGCCAGTCCAAGGGTCATGTGGTGCTCATTA
ACAGCATTGTGGGTCACTACATCTTTAATCCCCTGCCTGGAAGTCAGCAG
GAACTCAACATGTACCCGGCCACCAAGCACGCGATCACCGCTCTTACCGA
GCTCTTTCGCCAGGAGATGCGAGATTTCAAGACCAAAGTCAAGGTCACGA
GCATTAGTCCGGGATTGGTGGACACTGAGTTAGTGCCGTTGGACTACAAA
GGGCTGCCTATGCTACAGGCGGAGGATGTGGCAAATGCCATCATGTATGT
TCTGTCGACGCCTCCACATGTCCAGGTGCACGAGCTGACCATCAAGCCCT
TGGGTGAACCCTTTTAGGACACCCCTGCATTGCTTCACTTTTACTACTAA
ATATTTAACTATGATGGCCATGTCTTTGCCCTTAGTTTCTTAACTGAATT
ATTCGCGGATTGCAATAAACAGGAATAAAATAAACGGATCCAATGTCTGA
AATGTCTTTGAAATATATTGTGACAATTTTCATTATACCATACTTGCAAT
ATTAAAAAATTTGGCGATAAAGAGGAAAATCTCATAAATATTGTATATTA
TATGAAGAACAAGAAACCAGGCAGCTTAAAATAATATAATTGCTTTTACA
AACTTCGATCTCTGTTCTGACGATAACAAACATTTCGTATATTAAGAGAA
TGAATGTGAAACAGTTTTGATGCCGCACAAAGTGCATCCACAGAACTTGG
AGATAGCTTGACGAATTTATTTCAAATAAATCATGTATCCCCCGTCTAGG
TTAATAATGTGAATTGAAAATATTATTTCCATACTCGTCCCTCTGTGTTA
TCTATACGCCTGTTATATACATACAAACATTTTTCATTAAATTGTTCATT
GCTTAGCTGTTTTAAAGTATTTAATTATTCGATAAAAAATGTATGACTTG
TATTTTGGAAAAATCACAGAGTATTTACAACTGCATAACTCGTTCTTAAC
TACTTTTTGTAATATATCTGTAACATTTCTTAAAATAAATAGTGGTATTG
GAAAAAAAAAAAAAAAA

RH03309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG40485-RB 1485 CG40485-RB 37..1485 4..1452 7245 100 Plus
CG40485-RA 1192 CG40485-RA 2..597 4..599 2980 100 Plus
CG40485.a 881 CG40485.a 2..597 4..599 2980 100 Plus
CG40485-RA 1192 CG40485-RA 900..1192 599..891 1465 100 Plus
CG40485.a 881 CG40485.a 597..881 607..891 1425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 22356662..22357514 1451..599 4265 100 Minus
chrX 22417052 chrX 22357817..22358412 599..4 2950 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22960608..22961461 1452..599 4270 100 Minus
X 23542271 X 22961764..22962359 599..4 2980 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22945700..22946553 1452..599 4270 100 Minus
X 23527363 X 22946856..22947451 599..4 2980 100 Minus
X 23527363 X 22944057..22944090 748..715 155 97 Minus
Blast to na_te.dros performed 2019-03-15 22:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 339..406 1221..1284 113 69.1 Plus
Juan 4236 Juan JUAN 4236bp 3477..3563 1440..1353 113 61.8 Minus

RH03309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:53:43 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 22356662..22357513 600..1451 100 <- Minus
chrX 22357817..22358413 1..599 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:43 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 1..744 24..767 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:13 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 1..744 24..767 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:05 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 1..744 24..767 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:33:56 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 1..744 24..767 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:07 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 1..744 24..767 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:54:44 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 2..1449 4..1451 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:13 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 2..1449 4..1451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:05 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 2..1449 4..1451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:33:56 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 2..1449 4..1451 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:07 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
CG40485-RB 2..1449 4..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:43 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
X 22960609..22961460 600..1451 100 <- Minus
X 22961764..22962360 1..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:43 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
X 22960609..22961460 600..1451 100 <- Minus
X 22961764..22962360 1..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:43 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
X 22960609..22961460 600..1451 100 <- Minus
X 22961764..22962360 1..599 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:05 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22362445..22363296 600..1451 100 <- Minus
arm_X 22363600..22364196 1..599 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:05:40 Download gff for RH03309.complete
Subject Subject Range Query Range Percent Splice Strand
X 22945701..22946552 600..1451 100 <- Minus
X 22946856..22947452 1..599 99   Minus

RH03309.pep Sequence

Translation from 23 to 766

> RH03309.pep
MERWHNCVAVVTGASSGIGAAITRKLISAGVMVVALARRMDRLEQLREEL
PQDRRSRLRIMQCDVSDVSSVNAVFDAVQGDLGNVDILINNAGKLSGGQL
LTMSVDTVQQMLQTNVMGVVYCTQRAFESMRQRQSKGHVVLINSIVGHYI
FNPLPGSQQELNMYPATKHAITALTELFRQEMRDFKTKVKVTSISPGLVD
TELVPLDYKGLPMLQAEDVANAIMYVLSTPPHVQVHELTIKPLGEPF*

RH03309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22156-PA 248 GF22156-PA 1..248 1..247 1075 80.6 Plus
Dana\GF22157-PA 250 GF22157-PA 1..250 1..247 790 58.6 Plus
Dana\GF22361-PA 250 GF22361-PA 1..248 1..245 721 54.4 Plus
Dana\GF10960-PA 252 GF10960-PA 1..252 1..247 662 50.6 Plus
Dana\GF19119-PA 249 GF19119-PA 1..249 1..247 649 49.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17505-PA 247 GG17505-PA 1..247 1..247 1225 92.3 Plus
Dere\GG17506-PA 247 GG17506-PA 1..247 1..247 793 62.9 Plus
Dere\GG18873-PA 250 GG18873-PA 1..248 1..245 729 54.8 Plus
Dere\GG19013-PA 249 GG19013-PA 1..249 1..247 645 50 Plus
Dere\GG13756-PA 252 GG13756-PA 1..252 1..247 629 47.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12862-PA 247 GH12862-PA 1..247 1..247 1026 75.7 Plus
Dgri\GH12229-PA 250 GH12229-PA 1..250 1..247 746 53.2 Plus
Dgri\GH12228-PA 247 GH12228-PA 1..247 1..247 744 52.6 Plus
Dgri\GH12070-PA 249 GH12070-PA 1..249 1..247 650 52.2 Plus
Dgri\GH17647-PA 254 GH17647-PA 1..254 1..247 609 45.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG40485-PC 247 CG40485-PC 1..247 1..247 1248 100 Plus
CG40485-PB 247 CG40485-PB 1..247 1..247 1248 100 Plus
CG40485-PA 231 CG40485-PA 1..192 1..192 964 100 Plus
CG40486-PC 247 CG40486-PC 1..247 1..247 798 61.1 Plus
CG40486-PB 247 CG40486-PB 1..247 1..247 798 61.1 Plus
antdh-PA 250 CG1386-PA 1..248 1..245 697 54.4 Plus
CG10962-PB 249 CG10962-PB 1..249 1..247 620 49.6 Plus
CG8757-PB 252 CG8757-PB 1..252 1..247 596 46.6 Plus
CG9150-PB 251 CG9150-PB 1..251 1..247 589 47.2 Plus
CG9360-PA 251 CG9360-PA 1..249 1..245 579 48.4 Plus
CG3301-PC 250 CG3301-PC 1..250 1..247 518 46.3 Plus
CG3301-PB 250 CG3301-PB 1..250 1..247 518 46.3 Plus
CG3301-PA 250 CG3301-PA 1..250 1..247 518 46.3 Plus
rdhB-PB 248 CG7077-PB 7..244 4..243 423 38.9 Plus
rdhB-PA 248 CG7077-PA 7..244 4..243 423 38.9 Plus
CG31937-PA 321 CG31937-PA 48..245 8..210 221 29.7 Plus
CG3699-PA 251 CG3699-PA 5..229 6..229 217 29.5 Plus
CG7601-PA 326 CG7601-PA 55..243 8..203 211 29.1 Plus
CG12171-PA 257 CG12171-PA 1..192 1..203 201 27.6 Plus
CG31549-PB 257 CG31549-PB 1..192 1..203 195 26.6 Plus
CG31549-PA 257 CG31549-PA 1..192 1..203 195 26.6 Plus
firl-PE 318 CG14946-PE 57..246 8..203 194 28.1 Plus
firl-PC 318 CG14946-PC 57..246 8..203 194 28.1 Plus
firl-PD 318 CG14946-PD 57..246 8..203 194 28.1 Plus
CG3603-PB 249 CG3603-PB 10..246 8..244 189 29.5 Plus
CG3603-PA 249 CG3603-PA 10..246 8..244 189 29.5 Plus
CG31548-PA 256 CG31548-PA 7..191 8..203 179 25 Plus
CG17121-PA 361 CG17121-PA 94..261 8..183 179 30.1 Plus
Pdh-PC 261 CG4899-PC 8..189 9..203 178 27.4 Plus
Pdh-PA 278 CG4899-PA 25..206 9..203 178 27.4 Plus
CG9265-PD 399 CG9265-PD 88..298 8..224 166 24.1 Plus
CG9265-PC 399 CG9265-PC 88..298 8..224 166 24.1 Plus
CG9265-PB 399 CG9265-PB 88..298 8..224 166 24.1 Plus
CG9265-PA 399 CG9265-PA 88..298 8..224 166 24.1 Plus
CG6012-PA 308 CG6012-PA 52..237 9..203 159 26.3 Plus
CG11200-PC 355 CG11200-PC 69..272 8..203 157 26.3 Plus
CG11200-PA 355 CG11200-PA 69..272 8..203 157 26.3 Plus
CG11200-PB 355 CG11200-PB 69..272 8..203 157 26.3 Plus
CG13833-PA 321 CG13833-PA 54..240 8..201 152 25.6 Plus
Fbp2-PC 256 CG3763-PC 4..191 4..204 151 24.1 Plus
Fbp2-PB 256 CG3763-PB 4..191 4..204 151 24.1 Plus
Fbp2-PA 256 CG3763-PA 4..191 4..204 151 24.1 Plus
CG7322-PC 242 CG7322-PC 9..223 8..229 147 27.3 Plus
CG7322-PB 242 CG7322-PB 9..223 8..229 147 27.3 Plus
CG7322-PA 242 CG7322-PA 9..223 8..229 147 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14955-PA 247 GI14955-PA 1..247 1..247 1006 73.3 Plus
Dmoj\GI14956-PA 247 GI14956-PA 1..247 1..247 848 63.2 Plus
Dmoj\GI15762-PA 250 GI15762-PA 1..248 1..245 745 54.4 Plus
Dmoj\GI15562-PA 270 GI15562-PA 1..243 1..241 619 50.4 Plus
Dmoj\GI15259-PA 251 GI15259-PA 1..251 1..247 611 48.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16537-PA 294 GL16537-PA 52..294 1..247 1014 80.6 Plus
Dper\GL16539-PA 247 GL16539-PA 1..247 1..247 814 60.5 Plus
Dper\GL20303-PA 249 GL20303-PA 1..247 1..245 721 53.4 Plus
Dper\GL13028-PA 249 GL13028-PA 1..249 1..247 645 50.4 Plus
Dper\GL24037-PA 250 GL24037-PA 1..250 1..247 614 50.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23087-PA 294 GA23087-PA 52..294 1..247 1011 80.6 Plus
Dpse\GA23088-PA 247 GA23088-PA 1..247 1..247 815 60.5 Plus
Dpse\GA12578-PA 249 GA12578-PA 1..247 1..245 717 53.4 Plus
Dpse\GA25891-PA 249 GA25891-PA 1..249 1..247 639 50 Plus
Dpse\GA22691-PA 279 GA22691-PA 28..279 1..247 627 47.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10056-PA 247 GM10056-PA 1..247 1..247 787 62.5 Plus
Dsec\GM10055-PA 145 GM10055-PA 1..145 103..247 741 95.2 Plus
Dsec\GM11256-PA 250 GM11256-PA 1..248 1..245 726 54 Plus
Dsec\GM23885-PA 144 GM23885-PA 1..138 1..138 666 92 Plus
Dsec\GM13691-PA 249 GM13691-PA 1..249 1..247 653 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23342-PA 247 GD23342-PA 1..247 1..247 1240 93.9 Plus
Dsim\GD15999-PA 250 GD15999-PA 1..248 1..245 725 54 Plus
Dsim\GD16091-PA 249 GD16091-PA 1..249 1..247 652 49.6 Plus
Dsim\GD22600-PA 251 GD22600-PA 1..251 1..247 604 47.1 Plus
Dsim\GD15972-PA 251 GD15972-PA 1..249 1..245 595 47.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18923-PA 247 GJ18923-PA 1..247 1..247 1042 74.9 Plus
Dvir\GJ18924-PA 247 GJ18924-PA 1..247 1..247 824 59.9 Plus
Dvir\GJ18619-PA 250 GJ18619-PA 1..248 1..245 755 53.6 Plus
Dvir\GJ15175-PA 249 GJ15175-PA 1..249 1..247 662 52.4 Plus
Dvir\GJ23779-PA 249 GJ23779-PA 1..249 1..247 620 49.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19844-PA 249 GK19844-PA 1..249 1..247 1057 78.3 Plus
Dwil\GK16521-PA 250 GK16521-PA 1..248 1..245 730 53.6 Plus
Dwil\GK20029-PA 264 GK20029-PA 1..234 1..234 719 56.6 Plus
Dwil\GK15026-PA 253 GK15026-PA 1..253 1..247 653 48.8 Plus
Dwil\GK16827-PA 249 GK16827-PA 1..249 1..247 634 49.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15259-PA 247 GE15259-PA 1..247 1..247 1223 91.9 Plus
Dyak\GE15260-PA 247 GE15260-PA 1..247 1..247 791 62.5 Plus
Dyak\GE17313-PA 250 GE17313-PA 1..248 1..245 719 54 Plus
Dyak\GE17424-PA 249 GE17424-PA 1..249 1..247 650 50 Plus
Dyak\GE20052-PA 266 GE20052-PA 15..266 1..247 631 47.4 Plus

RH03309.hyp Sequence

Translation from 23 to 766

> RH03309.hyp
MERWHNCVAVVTGASSGIGAAITRKLISAGVMVVALARRMDRLEQLREEL
PQDRRSRLRIMQCDVSDVSSVNAVFDAVQGDLGNVDILINNAGKLSGGQL
LTMSVDTVQQMLQTNVMGVVYCTQRAFESMRQRQSKGHVVLINSIVGHYI
FNPLPGSQQELNMYPATKHAITALTELFRQEMRDFKTKVKVTSISPGLVD
TELVPLDYKGLPMLQAEDVANAIMYVLSTPPHVQVHELTIKPLGEPF*

RH03309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG40485-PB 247 CG40485-PB 1..247 1..247 1248 100 Plus
CG40485-PA 231 CG40485-PA 1..192 1..192 964 100 Plus
CG40486-PC 247 CG40486-PC 1..247 1..247 798 61.1 Plus
CG40486-PB 247 CG40486-PB 1..247 1..247 798 61.1 Plus
antdh-PA 250 CG1386-PA 1..248 1..245 697 54.4 Plus