BDGP Sequence Production Resources |
Search the DGRC for RH03540
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 35 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG15347-RA |
Protein status: | RH03540.pep: gold |
Preliminary Size: | 824 |
Sequenced Size: | 936 |
Gene | Date | Evidence |
---|---|---|
CG15347 | 2001-12-13 | Blastp of sequenced clone |
CG15347 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15347 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15347 | 2008-04-29 | Release 5.5 accounting |
CG15347 | 2008-08-15 | Release 5.9 accounting |
CG15347 | 2008-12-18 | 5.12 accounting |
936 bp (936 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070650
> RH03540.complete GAGTTCTGGTTCAGCTCCGTAACCAGTCGCAACATTCGATCGTCGTGAAA TTAGTTACATCAGTTATCAGCCATGAAGTTTTACCTGTTGGTGATTGCAG CCCTCTCGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAAT TCGAAGGACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCG CAACTGTTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCT ACACAATTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCG TGCAACAACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAA TCGAAACACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGA ACTCGACCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATC TGCCCGCTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCG CACCGTGGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCA GGAAGCAGTGCGTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGC TGCAACTTTCTGCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAG CGGTGCCCAGTTGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCG CCGCCTGGAGACTCTAAGATGTAACGACGGCCAGAGTCGAATGATGGACG AAAGTCAATCATGCCACAGACCCAGTTCTTTTAGAAATTCCCGTCTTATT ATTTTCTACATTCTAAAACATCATTATACATACATACATACACTGGGATG TTACATTTATACTCGTTTATTTCATTACTTTGAACAAAACGTTAATAAAG ATAACTAAACTAAAGAAGACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8350271..8350947 | 920..244 | 3370 | 99.9 | Minus |
chrX | 22417052 | chrX | 8352544..8352672 | 130..2 | 645 | 100 | Minus |
chrX | 22417052 | chrX | 8351001..8351115 | 244..130 | 575 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8350271..8350946 | 245..920 | 99 | <- | Minus |
chrX | 8351001..8351114 | 131..244 | 100 | <- | Minus |
chrX | 8352544..8352672 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..645 | 73..717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..645 | 73..717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..645 | 73..717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..645 | 73..717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..645 | 73..717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..919 | 2..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..919 | 2..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 4..923 | 1..920 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 1..919 | 2..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15347-RA | 4..923 | 1..920 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8458494..8459169 | 245..920 | 100 | <- | Minus |
X | 8459224..8459337 | 131..244 | 100 | <- | Minus |
X | 8460766..8460894 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8458494..8459169 | 245..920 | 100 | <- | Minus |
X | 8459224..8459337 | 131..244 | 100 | <- | Minus |
X | 8460766..8460894 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8458494..8459169 | 245..920 | 100 | <- | Minus |
X | 8459224..8459337 | 131..244 | 100 | <- | Minus |
X | 8460766..8460894 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8352527..8353202 | 245..920 | 100 | <- | Minus |
arm_X | 8353257..8353370 | 131..244 | 100 | <- | Minus |
arm_X | 8354799..8354927 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8466592..8467267 | 245..920 | 100 | <- | Minus |
X | 8467322..8467435 | 131..244 | 100 | <- | Minus |
X | 8468864..8468992 | 1..130 | 99 | Minus |
Translation from 72 to 716
> RH03540.pep MKFYLLVIAALSFLAYISCDGCIQCNSKDNERCATDPLSLLNRNCSDGSS NCYSRVLDGYTIRGCAVDLDNATRNSCNNELLCQLCTYSEGCNRNTFPLS RLMCLQCTGNSTSSSCATETYVSAKICPLYKFGDKCYIRNSNRTVDGSFQ RGCLTSANARKQCVKDGNCYTCEGRGCNFLLANDTNIPLARDSGAQLIIS MTLLISGLVAAWRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22583-PA | 214 | GF22583-PA | 1..214 | 1..214 | 909 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19047-PA | 214 | GG19047-PA | 1..214 | 1..214 | 980 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12232-PA | 213 | GH12232-PA | 1..191 | 1..192 | 680 | 65.1 | Plus |
Dgri\GH20775-PA | 2920 | GH20775-PA | 2741..2917 | 22..207 | 160 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15347-PA | 214 | CG15347-PA | 1..214 | 1..214 | 1158 | 100 | Plus |
CG15347-PB | 229 | CG15347-PB | 1..229 | 1..214 | 1132 | 93.4 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2799..2975 | 22..211 | 204 | 26.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1538..1695 | 22..178 | 184 | 31.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 698..849 | 22..178 | 176 | 31.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1963..2114 | 22..178 | 176 | 32.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2382..2540 | 22..183 | 174 | 31.5 | Plus |
CG13492-PD | 2979 | CG13492-PD | 278..432 | 22..178 | 169 | 33.9 | Plus |
CG15773-PB | 319 | CG15773-PB | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG15773-PA | 478 | CG15773-PA | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2638..2790 | 22..180 | 162 | 29.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1120..1271 | 22..178 | 154 | 26.9 | Plus |
CG34040-PA | 281 | CG34040-PA | 9..173 | 5..173 | 151 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15766-PA | 214 | GI15766-PA | 1..206 | 1..206 | 681 | 60.7 | Plus |
Dmoj\GI20859-PA | 2960 | GI20859-PA | 2781..2956 | 22..206 | 158 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20247-PA | 217 | GL20247-PA | 1..217 | 1..214 | 820 | 71 | Plus |
Dper\GL17513-PA | 2988 | GL17513-PA | 2807..2988 | 20..213 | 173 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13659-PA | 217 | GA13659-PA | 1..217 | 1..214 | 825 | 71.9 | Plus |
Dpse\GA12325-PA | 2988 | GA12325-PA | 2807..2988 | 20..213 | 173 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21334-PA | 214 | GM21334-PA | 1..214 | 1..214 | 1033 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16112-PA | 214 | GD16112-PA | 1..214 | 1..214 | 1048 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18623-PA | 214 | GJ18623-PA | 1..206 | 1..206 | 752 | 66.5 | Plus |
Dvir\GJ20594-PA | 2976 | GJ20594-PA | 2794..2976 | 18..214 | 172 | 33 | Plus |
Translation from 72 to 716
> RH03540.hyp MKFYLLVIAALSFLAYISCDGCIQCNSKDNERCATDPLSLLNRNCSDGSS NCYSRVLDGYTIRGCAVDLDNATRNSCNNELLCQLCTYSEGCNRNTFPLS RLMCLQCTGNSTSSSCATETYVSAKICPLYKFGDKCYIRNSNRTVDGSFQ RGCLTSANARKQCVKDGNCYTCEGRGCNFLLANDTNIPLARDSGAQLIIS MTLLISGLVAAWRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15347-PA | 214 | CG15347-PA | 1..214 | 1..214 | 1158 | 100 | Plus |
CG15347-PB | 229 | CG15347-PB | 1..229 | 1..214 | 1132 | 93.4 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2799..2975 | 22..211 | 204 | 26.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1538..1695 | 22..178 | 184 | 31.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 698..849 | 22..178 | 176 | 31.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1963..2114 | 22..178 | 176 | 32.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2382..2540 | 22..183 | 174 | 31.5 | Plus |
CG13492-PD | 2979 | CG13492-PD | 278..432 | 22..178 | 169 | 33.9 | Plus |
CG15773-PB | 319 | CG15773-PB | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG15773-PA | 478 | CG15773-PA | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2638..2790 | 22..180 | 162 | 29.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1120..1271 | 22..178 | 154 | 26.9 | Plus |