Clone RH03631 Report

Search the DGRC for RH03631

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:36
Well:31
Vector:pFlc-1
Associated Gene/TranscriptJheh1-RA
Protein status:RH03631.pep: gold
Preliminary Size:1492
Sequenced Size:1525

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15101 2002-10-13 Blastp of sequenced clone
CG15101 2003-01-01 Sim4 clustering to Release 3
Jheh1 2008-04-29 Release 5.5 accounting
Jheh1 2008-08-15 Release 5.9 accounting
Jheh1 2008-12-18 5.12 accounting

Clone Sequence Records

RH03631.complete Sequence

1525 bp (1525 high quality bases) assembled on 2002-10-13

GenBank Submission: BT001753

> RH03631.complete
GAGTGGAATCGTAGCTGCTATCCGAGACAGTCTGAGTGGAACCGCTGATA
GGAACAGATGGGTGTCACTGTTAAAATTCTGGTCTTGATACTGGCCATTG
CCGGTGGGCTGGTCTATAGGAATGTGACCCAACTATGGGCGGACTTGCCC
GCACCAAAGTTGGATCCCCAGGAGTGGTGGGGCGATGAGGCGCAGCCCAA
GGATTACGAGGCCTATTTGAAGAACAATTCGGAGGTGATAGGCAATAGGC
TTAGTTATCCGGATAAGACCATTGCTGATTTGAAAGAGCGTCTCAATCGC
ACCCTGCGCCTTACGCCTCCGCTCGAGGGCGTGGCTTTTGAGTACGGATT
CAATACGAATTACCTTAAGGAGGTCGTGGAGTACTGGCGCGATGACTACC
TGCCGCGTTGGCGCGAACGCGAGGTGTTCCTTTGGCAGTTCAATCACTTC
ACCACCGATATTCAGGGGCTACGCACACACTTCCTCCACCTGATGGTTTA
TGATGACAACAAAGTGGGTAAGAAACACTATCCGGTGTTGCTGCTCCACG
GATGGCCGGGATCGGTGCGGGAGTTTTACGATTTCATACATTTGCTGCAT
CAGACCAATCTGGACAATAATAACAAGTACATCTTTAACGTCGTGGTTCC
GAGTTTACCAGGTTATGGCTGGTCACAGGGCACCTCCAGAAAAGGACTGG
GTCCCGCTCAAGTGGCGGTGATGATGAGGAATCTTATGCTGCGTTTGGGA
TACAACAAATTCTTTATCCAGGGTGGAGACTGGGGCAGCATTATTGGCAG
CAACATTGCCACCTTGTATCCGGAAAACGTGCTGGGCTACCACTCGAACA
TGTGCAACAATTTGAGTCCGAAGTCGCTGGCTAAGGGTTTAGTGGCCGAA
TTTTGGCCCAGTTTGTTTGTGCCCTCTGGCTTTGAAGATTTCTTCTTTCC
CAAGTCTAACGAGATGAGATACCTAATGGAGGAGAGTGGCTACTTCCACA
TCCAGGCCACCAAACCGGACACCATCGGAGCCGCCCTCACCGATAACCCA
GTGGGTCTGGCCGCCTACATTCTGGAGAAGTTCTCCACGTGGACAAATCC
CAGCTACCGATCTCTGCCAGATGGAGGACTCACTAAGCGCTACAAAATGG
ATGCCCTGCTGGACAACCTGATGATCTACTACCTGACCAATTCGATTACC
ACCTCCCAGCGTCTCTATGCCGAGCAGTATGCCCAGGCACAGCGGGACCT
GCACCTGGATCGGGTTCCCACCCGAGTGCCAACTGGATGTGCCCGTTTCA
AGAGCGACATTATGCAGTTCCTGGATGTCCAGTTGAAGGATAAGTACACG
AACCTAGTGCACAGCACTTACCACAAAAAGGGCGGGCACTTTGCCGCTCT
AGAGGTTCCAAAGGTTCTATACAAGGATTTTATAGACTTTGTCGAAACGG
TGGAACGTAAGTTTAAAATTAAGACTCTGTAGATCTTCCAATAAAAGCTT
AATTGTTACAAAAAAAAAAAAAAAA

RH03631.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-RA 1646 Jheh1-RA 85..1601 2..1518 7585 100 Plus
Jheh3-RA 1732 Jheh3-RA 924..1057 722..855 340 83.5 Plus
Jheh3-RA 1732 Jheh3-RA 1182..1246 977..1041 160 83 Plus
Jheh2-RC 1411 Jheh2-RC 967..1031 1159..1223 160 83 Plus
Jheh3-RA 1732 Jheh3-RA 749..797 541..589 140 85.7 Plus
Jheh2-RC 1411 Jheh2-RC 782..836 974..1028 140 83.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14740562..14741395 1509..676 4065 99.2 Minus
chr2R 21145070 chr2R 14741972..14742237 267..2 1315 99.6 Minus
chr2R 21145070 chr2R 14741450..14741662 679..467 1065 100 Minus
chr2R 21145070 chr2R 14741715..14741917 468..266 1015 100 Minus
chr2R 21145070 chr2R 14748150..14748283 855..722 340 83.6 Minus
chr2R 21145070 chr2R 14747901..14748025 1101..977 190 76.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18853425..18854267 1518..676 4215 100 Minus
2R 25286936 2R 18854844..18855109 267..2 1330 100 Minus
2R 25286936 2R 18854322..18854534 679..467 1065 100 Minus
2R 25286936 2R 18854587..18854789 468..266 1015 100 Minus
2R 25286936 2R 18861016..18861149 855..722 340 83.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18854624..18855466 1518..676 4215 100 Minus
2R 25260384 2R 18856043..18856308 267..2 1330 100 Minus
2R 25260384 2R 18855521..18855733 679..467 1065 100 Minus
2R 25260384 2R 18855786..18855988 468..266 1015 100 Minus
2R 25260384 2R 18862215..18862348 855..722 340 83.5 Minus
2R 25260384 2R 18857346..18857410 1223..1159 160 83 Minus
2R 25260384 2R 18862026..18862090 1041..977 160 83 Minus
2R 25260384 2R 18862543..18862591 589..541 140 85.7 Minus
2R 25260384 2R 18857541..18857595 1028..974 140 83.6 Minus
Blast to na_te.dros performed on 2019-03-16 04:16:28 has no hits.

RH03631.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:17:29 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14740562..14741392 679..1509 99 <- Minus
chr2R 14741451..14741661 468..678 100 <- Minus
chr2R 14741716..14741915 268..467 100 <- Minus
chr2R 14741972..14742237 1..267 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:38:51 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1425 58..1482 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:10:50 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1425 58..1482 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:00 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1425 58..1482 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:01:40 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1425 58..1482 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:53 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1425 58..1482 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:32:18 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1508 2..1509 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:10:50 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1508 2..1509 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:00 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1486 24..1509 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:01:40 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1508 2..1509 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:53 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh1-RA 1..1486 24..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:29 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18853434..18854264 679..1509 100 <- Minus
2R 18854323..18854533 468..678 100 <- Minus
2R 18854588..18854787 268..467 100 <- Minus
2R 18854844..18855109 1..267 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:29 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18853434..18854264 679..1509 100 <- Minus
2R 18854323..18854533 468..678 100 <- Minus
2R 18854588..18854787 268..467 100 <- Minus
2R 18854844..18855109 1..267 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:29 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18853434..18854264 679..1509 100 <- Minus
2R 18854323..18854533 468..678 100 <- Minus
2R 18854588..18854787 268..467 100 <- Minus
2R 18854844..18855109 1..267 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:00 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14741828..14742038 468..678 100 <- Minus
arm_2R 14742093..14742292 268..467 100 <- Minus
arm_2R 14742349..14742614 1..267 99   Minus
arm_2R 14740939..14741769 679..1509 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:33:20 Download gff for RH03631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18854633..18855463 679..1509 100 <- Minus
2R 18855522..18855732 468..678 100 <- Minus
2R 18855787..18855986 268..467 100 <- Minus
2R 18856043..18856308 1..267 99   Minus

RH03631.pep Sequence

Translation from 57 to 1481

> RH03631.pep
MGVTVKILVLILAIAGGLVYRNVTQLWADLPAPKLDPQEWWGDEAQPKDY
EAYLKNNSEVIGNRLSYPDKTIADLKERLNRTLRLTPPLEGVAFEYGFNT
NYLKEVVEYWRDDYLPRWREREVFLWQFNHFTTDIQGLRTHFLHLMVYDD
NKVGKKHYPVLLLHGWPGSVREFYDFIHLLHQTNLDNNNKYIFNVVVPSL
PGYGWSQGTSRKGLGPAQVAVMMRNLMLRLGYNKFFIQGGDWGSIIGSNI
ATLYPENVLGYHSNMCNNLSPKSLAKGLVAEFWPSLFVPSGFEDFFFPKS
NEMRYLMEESGYFHIQATKPDTIGAALTDNPVGLAAYILEKFSTWTNPSY
RSLPDGGLTKRYKMDALLDNLMIYYLTNSITTSQRLYAEQYAQAQRDLHL
DRVPTRVPTGCARFKSDIMQFLDVQLKDKYTNLVHSTYHKKGGHFAALEV
PKVLYKDFIDFVETVERKFKIKTL*

RH03631.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13744-PA 474 GF13744-PA 1..474 1..474 2304 88 Plus
Dana\GF13743-PA 462 GF13743-PA 6..461 5..466 1272 53.1 Plus
Dana\GF13742-PA 462 GF13742-PA 4..458 3..463 1257 52.8 Plus
Dana\GF13741-PA 468 GF13741-PA 5..457 3..462 1225 52.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20936-PA 474 GG20936-PA 1..474 1..474 2425 94.5 Plus
Dere\GG20934-PA 463 GG20934-PA 4..458 3..463 1292 53.2 Plus
Dere\GG20933-PA 468 GG20933-PA 6..460 7..465 1211 52.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19730-PA 474 GH19730-PA 1..474 1..474 2139 80.4 Plus
Dgri\GH19729-PA 462 GH19729-PA 9..458 5..463 1285 54.5 Plus
Dgri\GH19728-PA 463 GH19728-PA 5..460 3..465 1207 51.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-PA 474 CG15101-PA 1..474 1..474 2546 100 Plus
Jheh2-PD 463 CG15102-PD 7..458 6..463 1286 54.7 Plus
Jheh2-PA 463 CG15102-PA 7..458 6..463 1286 54.7 Plus
Jheh3-PA 468 CG15106-PA 9..457 10..462 1221 53 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20154-PA 474 GI20154-PA 1..474 1..474 2125 80.4 Plus
Dmoj\GI20153-PA 464 GI20153-PA 7..458 3..463 1332 55.7 Plus
Dmoj\GI20152-PA 465 GI20152-PA 5..460 3..465 1182 51.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10582-PA 474 GL10582-PA 1..474 1..474 2203 84 Plus
Dper\GL10579-PA 468 GL10579-PA 5..460 3..465 1204 51.7 Plus
Dper\GL10580-PA 325 GL10580-PA 4..322 3..326 810 49.8 Plus
Dper\GL10581-PA 117 GL10581-PA 2..116 352..466 338 55.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13492-PA 474 GA13492-PA 1..474 1..474 2207 84 Plus
Dpse\GA13493-PA 463 GA13493-PA 4..462 3..466 1304 54.4 Plus
Dpse\GA13496-PA 468 GA13496-PA 6..460 7..465 1192 51.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Jheh1-PA 474 GM19863-PA 1..474 1..474 2482 97.3 Plus
Dsec\GM19862-PA 463 GM19862-PA 6..458 5..463 1289 53.7 Plus
Dsec\Jheh3-PA 468 GM19861-PA 6..460 7..465 1227 52.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Jheh1-PA 474 GD25350-PA 1..474 1..474 2489 97.5 Plus
Dsim\GD25349-PA 463 GD25349-PA 6..458 5..463 1293 54.1 Plus
Dsim\Jheh3-PA 468 GD25348-PA 6..460 7..465 1223 52.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22431-PA 474 GJ22431-PA 1..474 1..474 2140 80.2 Plus
Dvir\GJ22430-PA 462 GJ22430-PA 9..458 5..463 1319 55.8 Plus
Dvir\GJ22429-PA 466 GJ22429-PA 6..460 7..465 1183 52.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20693-PA 474 GK20693-PA 1..474 1..474 2159 82.3 Plus
Dwil\GK20692-PA 463 GK20692-PA 9..458 5..463 1280 53.2 Plus
Dwil\GK20691-PA 467 GK20691-PA 6..460 7..465 1203 52.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13873-PA 474 GE13873-PA 1..474 1..474 2458 95.4 Plus
Dyak\GE13872-PA 463 GE13872-PA 6..458 5..463 1279 53.7 Plus
Dyak\GE13871-PA 468 GE13871-PA 6..460 7..465 1209 51.8 Plus

RH03631.hyp Sequence

Translation from 57 to 1481

> RH03631.hyp
MGVTVKILVLILAIAGGLVYRNVTQLWADLPAPKLDPQEWWGDEAQPKDY
EAYLKNNSEVIGNRLSYPDKTIADLKERLNRTLRLTPPLEGVAFEYGFNT
NYLKEVVEYWRDDYLPRWREREVFLWQFNHFTTDIQGLRTHFLHLMVYDD
NKVGKKHYPVLLLHGWPGSVREFYDFIHLLHQTNLDNNNKYIFNVVVPSL
PGYGWSQGTSRKGLGPAQVAVMMRNLMLRLGYNKFFIQGGDWGSIIGSNI
ATLYPENVLGYHSNMCNNLSPKSLAKGLVAEFWPSLFVPSGFEDFFFPKS
NEMRYLMEESGYFHIQATKPDTIGAALTDNPVGLAAYILEKFSTWTNPSY
RSLPDGGLTKRYKMDALLDNLMIYYLTNSITTSQRLYAEQYAQAQRDLHL
DRVPTRVPTGCARFKSDIMQFLDVQLKDKYTNLVHSTYHKKGGHFAALEV
PKVLYKDFIDFVETVERKFKIKTL*

RH03631.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh1-PA 474 CG15101-PA 1..474 1..474 2546 100 Plus
Jheh2-PD 463 CG15102-PD 7..458 6..463 1286 54.7 Plus
Jheh2-PA 463 CG15102-PA 7..458 6..463 1286 54.7 Plus
Jheh3-PA 468 CG15106-PA 9..457 10..462 1221 53 Plus