BDGP Sequence Production Resources |
Search the DGRC for RH03850
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 38 |
Well: | 50 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Obp56e-RA |
Protein status: | RH03850.pep: gold |
Preliminary Size: | 513 |
Sequenced Size: | 546 |
Gene | Date | Evidence |
---|---|---|
CG8462 | 2001-12-13 | Blastp of sequenced clone |
CG8462 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8462 | 2003-01-01 | Sim4 clustering to Release 3 |
Obp56e | 2008-04-29 | Release 5.5 accounting |
Obp56e | 2008-08-15 | Release 5.9 accounting |
Obp56e | 2008-12-18 | 5.12 accounting |
546 bp (546 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070654
> RH03850.complete GTACAGTTTCTATTCTAAAAGATTCTACACAGCAGATTACGATCAGCATC ATGAAAGTATTCTTTGTGTTTGCCGCCCTTGCAGCTCTATCTTTGGCATC TGCCGTGGGGCTAACTGATTCCCAAAAGGCTGAGGCAAAGCAGAGAGCCA AGGCCTGCGTCAAACAGGAGGGAATCACGAAGGAGCAAGCTATTGCCCTG CGGTCTGGAAACTTTGCAGACTCCGATCCAAAGGTAAAGTGCTTCGCCAA CTGCTTCCTGGAGCAGACCGGCCTGGTGGCCAATGGGCAGATAAAACCTG ACGTGGTTTTGGCCAAACTAGGTCCCATCGCCGGCGAAGCCAATGTCAAG GAGGTGCAGGCCAAGTGTGACTCGACCAAGGGAGCCGACAAGTGCGACAC TAGCTATCTGCTGTACAAGTGCTACTACGAAAACCACGCCCAATTCTAAG AAAACCTTTTTTGATTTTCAAAAGAATATTTGTTTCTTTGATTACCAGTT ATTCTCAATAAAAATTAGATCAGGCTTCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 15599715..15600138 | 107..530 | 2075 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 15599555..15599660 | 3..108 | 515 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 15590492..15590777 | 450..165 | 245 | 72.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 19712509..19712935 | 107..533 | 2135 | 100 | Plus |
2R | 25286936 | 2R | 19712349..19712454 | 3..108 | 530 | 100 | Plus |
2R | 25286936 | 2R | 19703284..19703569 | 450..165 | 260 | 72.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 19713708..19714134 | 107..533 | 2135 | 100 | Plus |
2R | 25260384 | 2R | 19713548..19713653 | 3..108 | 530 | 100 | Plus |
2R | 25260384 | 2R | 19704483..19704576 | 450..357 | 200 | 80.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 824..864 | 466..426 | 106 | 73.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 15599553..15599659 | 1..107 | 97 | -> | Plus |
chr2R | 15599716..15600138 | 108..530 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 1..399 | 51..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 1..399 | 51..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 1..399 | 51..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 1..399 | 51..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 1..399 | 51..449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 3..532 | 1..530 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 3..532 | 1..530 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 3..532 | 1..530 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 3..532 | 1..530 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp56e-RA | 3..532 | 1..530 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19712510..19712932 | 108..530 | 100 | Plus | |
2R | 19712347..19712453 | 1..107 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19712510..19712932 | 108..530 | 100 | Plus | |
2R | 19712347..19712453 | 1..107 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19712510..19712932 | 108..530 | 100 | Plus | |
2R | 19712347..19712453 | 1..107 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 15599852..15599958 | 1..107 | 98 | -> | Plus |
arm_2R | 15600015..15600437 | 108..530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19713709..19714131 | 108..530 | 100 | Plus | |
2R | 19713546..19713652 | 1..107 | 98 | -> | Plus |
Translation from 2 to 448
> RH03850.hyp TVSILKDSTQQITISIMKVFFVFAALAALSLASAVGLTDSQKAEAKQRAK ACVKQEGITKEQAIALRSGNFADSDPKVKCFANCFLEQTGLVANGQIKPD VVLAKLGPIAGEANVKEVQAKCDSTKGADKCDTSYLLYKCYYENHAQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Obp56e-PA | 132 | CG8462-PA | 1..132 | 17..148 | 675 | 100 | Plus |
Obp56e-PB | 131 | CG8462-PB | 1..131 | 17..148 | 659 | 99.2 | Plus |
Obp56d-PB | 131 | CG11218-PB | 1..129 | 17..146 | 439 | 63.8 | Plus |
Obp56d-PA | 131 | CG11218-PA | 1..129 | 17..146 | 439 | 63.8 | Plus |
Obp56a-PA | 139 | CG11797-PA | 1..128 | 17..141 | 245 | 37.5 | Plus |
Translation from 50 to 448
> RH03850.pep MKVFFVFAALAALSLASAVGLTDSQKAEAKQRAKACVKQEGITKEQAIAL RSGNFADSDPKVKCFANCFLEQTGLVANGQIKPDVVLAKLGPIAGEANVK EVQAKCDSTKGADKCDTSYLLYKCYYENHAQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11735-PA | 130 | GF11735-PA | 1..130 | 1..132 | 514 | 75.8 | Plus |
Dana\GF13167-PA | 131 | GF13167-PA | 1..129 | 1..130 | 436 | 64.6 | Plus |
Dana\GF11734-PA | 136 | GF11734-PA | 11..130 | 8..127 | 256 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21996-PA | 132 | GG21996-PA | 1..132 | 1..132 | 530 | 84.8 | Plus |
Dere\GG20889-PA | 131 | GG20889-PA | 1..131 | 1..132 | 421 | 59.8 | Plus |
Dere\GG21994-PA | 139 | GG21994-PA | 1..128 | 1..125 | 238 | 38.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22760-PA | 132 | GH22760-PA | 1..130 | 1..130 | 390 | 59.2 | Plus |
Dgri\GH23017-PA | 132 | GH23017-PA | 3..128 | 4..129 | 275 | 40.5 | Plus |
Dgri\GH23015-PA | 138 | GH23015-PA | 6..128 | 3..125 | 243 | 38.2 | Plus |
Dgri\GH23016-PA | 135 | GH23016-PA | 1..126 | 1..125 | 204 | 31.7 | Plus |
Dgri\GH15401-PA | 110 | GH15401-PA | 5..100 | 36..132 | 132 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Obp56e-PA | 132 | CG8462-PA | 1..132 | 1..132 | 675 | 100 | Plus |
Obp56e-PB | 131 | CG8462-PB | 1..131 | 1..132 | 659 | 99.2 | Plus |
Obp56d-PB | 131 | CG11218-PB | 1..129 | 1..130 | 439 | 63.8 | Plus |
Obp56d-PA | 131 | CG11218-PA | 1..129 | 1..130 | 439 | 63.8 | Plus |
Obp56a-PA | 139 | CG11797-PA | 1..128 | 1..125 | 245 | 37.5 | Plus |
Obp56f-PA | 125 | CG30450-PA | 1..119 | 1..125 | 135 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18537-PA | 132 | GI18537-PA | 1..132 | 1..132 | 411 | 59.8 | Plus |
Dmoj\GI21083-PA | 130 | GI21083-PA | 1..128 | 1..130 | 344 | 51.5 | Plus |
Dmoj\GI21082-PA | 138 | GI21082-PA | 1..128 | 1..125 | 248 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11722-PA | 131 | GL11722-PA | 1..131 | 1..132 | 462 | 64.4 | Plus |
Dper\GL10359-PA | 130 | GL10359-PA | 1..130 | 1..132 | 460 | 70.5 | Plus |
Dper\GL10358-PA | 137 | GL10358-PA | 1..134 | 1..131 | 251 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Obp56e-PA | 130 | GA21096-PA | 1..130 | 1..132 | 464 | 71.2 | Plus |
Dpse\Obp56d-PA | 131 | GA10849-PA | 1..131 | 1..132 | 462 | 64.4 | Plus |
Dpse\Obp56a-PA | 137 | GA11204-PA | 1..134 | 1..131 | 250 | 38.8 | Plus |
Dpse\Obp69a-PA | 149 | GA10317-PA | 13..139 | 6..132 | 154 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Obp56e-PA | 119 | GM23181-PA | 1..119 | 1..132 | 495 | 84.1 | Plus |
Dsec\GM23170-PA | 131 | GM23170-PA | 1..131 | 1..132 | 443 | 63.6 | Plus |
Dsec\GM21981-PA | 139 | GM21981-PA | 1..128 | 1..125 | 237 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Obp56e-PA | 132 | GD11478-PA | 1..132 | 1..132 | 597 | 94.7 | Plus |
Dsim\Obp56d-PA | 131 | GD15213-PA | 1..131 | 1..132 | 446 | 64.4 | Plus |
Dsim\Obp56a-PA | 139 | GD11477-PA | 1..128 | 1..125 | 242 | 38.3 | Plus |
Dsim\Obp56f-PA | 125 | GD11479-PA | 1..119 | 1..125 | 141 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Obp56d-PA | 132 | GJ21407-PA | 1..132 | 1..132 | 399 | 62.9 | Plus |
Dvir\Obp56eL1-PA | 130 | GJ20932-PA | 3..128 | 5..130 | 339 | 48.4 | Plus |
Dvir\Obp56a-PA | 138 | GJ20931-PA | 1..128 | 1..125 | 245 | 37.5 | Plus |
Dvir\Obp69a-PA | 147 | GJ13150-PA | 17..137 | 11..132 | 133 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15691-PA | 132 | GK15691-PA | 1..132 | 1..132 | 471 | 66.7 | Plus |
Dwil\GK15692-PA | 132 | GK15692-PA | 1..132 | 1..132 | 438 | 67.4 | Plus |
Dwil\GK15889-PA | 139 | GK15889-PA | 1..130 | 1..127 | 263 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Obp56e-PA | 132 | GE12075-PA | 1..132 | 1..132 | 578 | 84.8 | Plus |
Dyak\GE13830-PA | 131 | GE13830-PA | 1..131 | 1..132 | 437 | 62.1 | Plus |
Dyak\GE12074-PA | 139 | GE12074-PA | 1..128 | 1..125 | 248 | 39.1 | Plus |