Clone RH04128 Report

Search the DGRC for RH04128

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:41
Well:28
Vector:pFlc-1
Associated Gene/TranscripteIF-3p66-RB
Protein status:RH04128.pep: gold
Sequenced Size:2020

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10161 2002-01-01 Sim4 clustering to Release 2
eIF-3p66 2008-04-29 Release 5.5 accounting
eIF-3p66 2008-08-15 Release 5.9 accounting
eIF-3p66 2008-12-18 5.12 accounting

Clone Sequence Records

RH04128.complete Sequence

2020 bp (2020 high quality bases) assembled on 2005-10-24

GenBank Submission: BT023923

> RH04128.complete
TTTTCAACGCGACAACGGTCCCACTCAACTATTTTCGCAACACGCGACGA
TACGAATTTTCCACATTTCTTTGTTGATTTCTGGAAAATCGCTGTATATA
GACCGAATAGCCGACTGCAGACTGAGCACCAGGTAAACGCGCGAGATGAG
CGAGACCATAAACACCGCGGCTCAGTTCCCGAGCTTCGAGAAGCCGACCG
TGCAGTTCAATGAAAAGGGCTGGGGTCCCTGCGAGCTGCCCGATACGTTC
AAGGATGTGCCGTACCAGCCGTTCAGCAAGAACGATCGTCTGGGCAAGAT
CTGCGACTGGACGAATACGTCGAACAACGACAAGAAGTACCAGAACAAGT
ATGCCTCCAGCTTTGGCACGGGCATTCAGTACTCGTACTACCATGAGGAG
GACGAGACAACCTTCCACCTGGTGGACACGGCCCGCGTCCAGAAGCCGCC
GCACCAGCGCGGCCGGTTCCGCAACATGAGGAATTCGCGTTCCGGTCGTG
GCAGGAATGCCCGCGGTGGCCTTAATACTCACGGCATGACGACGCTCAGC
GGCAAGAATGTAAAGGCCCGCGATCCGCGCCATGGTCGCGGCATGGGCAA
GAAGTTCGGTCATCGCGGACCACCACCAAAGATGCGCGAATCTTCGGTGG
CCGTCCGCGCCGATTGGGCATCCATCGAGGAGATGGACTTCCCGCGACTC
ATCAAGCTGTCGCTGCCCAACATCAAGGAGGGCGTCGATATTGTCACCTG
CGGCACGTTGGAGTACTACGACAAGACCTACGACCGCATCAATGTGAAGA
ACGAGAAGCCGCTGCAGAAGATCGATCGCATCGTGCATACGGTGACCACC
ACAGACGATCCCGTCATCCGGCGTTTGTCTAAGACCGTCGGCAATGTCTT
CGCCACGGACGCCATCCTGGCCACCATCATGTGCTCTACGCGATCGAACT
ATTCCTGGGATATTGTCATCGAGAAAGTTGGCGACAAGGTGTTCATGGAC
AAGCGTGACCACACCGAGTTCGATCTGTTGACCGTGAACGAGAGCAGCGT
GGAACCACCGACCGACGACGACAGCTCATGCAACTCCCCTCGCAACCTGG
CCATCGAGGCGACTTTCATTAACCACAACTTTAGCCAGCAGGTGCTTAAG
ACTGGAGACCAGGAACCCAAATACAAGTTCGAGGAAAGCAACCCTTTCAT
CAGCGAGGACGAAGATATCCAAGTCGCCAGCGTGGGCTACCGCTACAAGA
AGTGGGAGCTGGGAAGCGATATTGTCCTGGTAGCGCGTTGCGAGCACGAT
GGTGTCCTGCAGACGCCAAGCGGCGAGCCGCAGTTCATGACTATCAAGGC
ACTCAACGAGTGGGACTCGAAGTTGGCCAATGGCGTGGAATGGCGTCAAA
AGTTGGACACGCAGCGCGGTGCTGTGCTCGCCAACGAGCTGAGGAACAAC
GCATGCAAGCTGGCCAAGTGGACTGTGCAGGCCGTCCTGGCCGGGTCCGA
TCAGCTAAAGCTCGGCTATGTGTCGCGTATCAATCCGAGAGATCACTCGC
GTCACGTCATCCTCGGCACGCAGCAGTTCAAGCCGCATGAATTTGCCACT
CAGATCAACCTGAGCATGGACAACGCCTGGGGAATCCTGAGATGCATCAT
CGATCTGGTGATGAAGCAGAAGGATGGCAAATACCTGATCATGAAGGACC
CCAACAAGCCGATCATCCGTCTGTACGACATCCCAGACAATACTTTCGAC
TCCGATGACTCGGACGATGGCGAGGGCGATGACGAAGGTTTCCAGCAGGT
CTACAACTACGCGCACAACAAGATTTAGACGCCACGCCCCCCTACTCCTG
CATCCCTTCCAGTCTTGGGCTCTTTTGCCACAACCCGCTAAGAATAACCA
CAACTGATGTCCTCTAAAGGAAAAGGTCATGTTATAGGCCCTAGCTTAAG
CATTTGTATTCGATTTAAATTCAGATATTTCCTAGTAAATCACAGAGGGC
GAAACAAAAAAAAAAAAAAA

RH04128.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-3p66-RB 2307 eIF-3p66-RB 123..2128 2..2007 10030 100 Plus
eIF-3p66.a 2077 eIF-3p66.a 407..2069 345..2007 8315 100 Plus
eIF-3p66.a 2077 eIF-3p66.a 3..345 2..344 1715 100 Plus
CG4810.a 2171 CG4810.a 1235..1660 1330..1755 750 78.4 Plus
CG4810.a 2171 CG4810.a 724..905 813..994 250 75.8 Plus
CG4810.a 2171 CG4810.a 140..199 253..312 210 90 Plus
CG4810.a 2171 CG4810.a 1009..1058 1098..1147 145 86 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19504992..19505723 1274..2005 3660 100 Plus
chr3R 27901430 chr3R 19503918..19504554 345..981 3155 99.7 Plus
chr3R 27901430 chr3R 19503453..19503795 2..344 1685 99.4 Plus
chr3R 27901430 chr3R 19504622..19504917 980..1275 1480 100 Plus
chr3R 27901430 chr3R 8018660..8019085 1755..1330 750 78.4 Minus
chr3R 27901430 chr3R 8019492..8019824 994..662 270 72.1 Minus
chr3R 27901430 chr3R 8020198..8020257 312..253 210 90 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:18:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23681586..23682319 1274..2007 3670 100 Plus
3R 32079331 3R 23680512..23681148 345..981 3185 100 Plus
3R 32079331 3R 23680047..23680389 2..344 1715 100 Plus
3R 32079331 3R 23681216..23681511 980..1275 1480 100 Plus
3R 32079331 3R 12193275..12193700 1755..1330 750 78.4 Minus
3R 32079331 3R 12194107..12194439 994..662 270 72.1 Minus
3R 32079331 3R 12194813..12194872 312..253 210 90 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23422417..23423150 1274..2007 3670 100 Plus
3R 31820162 3R 23421343..23421979 345..981 3185 100 Plus
3R 31820162 3R 23420878..23421220 2..344 1715 100 Plus
3R 31820162 3R 23422047..23422342 980..1275 1480 100 Plus
3R 31820162 3R 11934106..11934531 1755..1330 750 78.4 Minus
3R 31820162 3R 11934938..11935119 994..813 250 75.8 Minus
3R 31820162 3R 11935644..11935703 312..253 210 90 Minus
3R 31820162 3R 11934789..11934834 1143..1098 140 86.9 Minus
Blast to na_te.dros performed on 2019-03-15 16:41:19 has no hits.

RH04128.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:42:28 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19504623..19504915 981..1273 100 -> Plus
chr3R 19503451..19503795 1..344 99 -> Plus
chr3R 19503918..19504553 345..980 99 -> Plus
chr3R 19504992..19505723 1274..2005 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:01 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..1683 146..1828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:47:05 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..1683 146..1828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:07:40 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..1683 146..1828 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:28:44 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..1683 146..1828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:06 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..1683 146..1828 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:20:31 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..2006 1..2005 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:47:05 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..2006 1..2005 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:40 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 7..2012 1..2005 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:28:44 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 1..2006 1..2005 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:06 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p66-RB 7..2012 1..2005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:28 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23680045..23680389 1..344 99 -> Plus
3R 23680512..23681147 345..980 100 -> Plus
3R 23681217..23681509 981..1273 100 -> Plus
3R 23681586..23682317 1274..2005 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:28 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23680045..23680389 1..344 99 -> Plus
3R 23680512..23681147 345..980 100 -> Plus
3R 23681217..23681509 981..1273 100 -> Plus
3R 23681586..23682317 1274..2005 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:42:28 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23680045..23680389 1..344 99 -> Plus
3R 23680512..23681147 345..980 100 -> Plus
3R 23681217..23681509 981..1273 100 -> Plus
3R 23681586..23682317 1274..2005 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:40 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19506939..19507231 981..1273 100 -> Plus
arm_3R 19505767..19506111 1..344 99 -> Plus
arm_3R 19506234..19506869 345..980 100 -> Plus
arm_3R 19507308..19508039 1274..2005 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:07:14 Download gff for RH04128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23420876..23421220 1..344 99 -> Plus
3R 23421343..23421978 345..980 100 -> Plus
3R 23422048..23422340 981..1273 100 -> Plus
3R 23422417..23423148 1274..2005 100   Plus

RH04128.pep Sequence

Translation from 145 to 1827

> RH04128.pep
MSETINTAAQFPSFEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLG
KICDWTNTSNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQK
PPHQRGRFRNMRNSRSGRGRNARGGLNTHGMTTLSGKNVKARDPRHGRGM
GKKFGHRGPPPKMRESSVAVRADWASIEEMDFPRLIKLSLPNIKEGVDIV
TCGTLEYYDKTYDRINVKNEKPLQKIDRIVHTVTTTDDPVIRRLSKTVGN
VFATDAILATIMCSTRSNYSWDIVIEKVGDKVFMDKRDHTEFDLLTVNES
SVEPPTDDDSSCNSPRNLAIEATFINHNFSQQVLKTGDQEPKYKFEESNP
FISEDEDIQVASVGYRYKKWELGSDIVLVARCEHDGVLQTPSGEPQFMTI
KALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAG
SDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRC
IIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ
QVYNYAHNKI*

RH04128.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16250-PA 561 GF16250-PA 1..557 1..558 2931 96.6 Plus
Dana\GF17742-PA 549 GF17742-PA 2..543 9..549 2009 67.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11214-PA 560 GG11214-PA 1..560 1..560 3018 99.1 Plus
Dere\GG17155-PA 551 GG17155-PA 2..543 9..546 1996 67.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17455-PA 563 GH17455-PA 1..559 1..558 2808 93.8 Plus
Dgri\GH15488-PA 557 GH15488-PA 2..546 9..547 1839 62.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
eIF3d1-PB 560 CG10161-PB 1..560 1..560 2997 100 Plus
eIF3d2-PA 551 CG4810-PA 2..543 9..546 1969 66.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22779-PA 563 GI22779-PA 1..559 1..558 2803 93.8 Plus
Dmoj\GI22467-PA 554 GI22467-PA 2..545 9..547 1900 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13650-PA 541 GL13650-PA 1..537 1..558 2530 88.8 Plus
Dper\GL21571-PA 545 GL21571-PA 7..527 14..534 1868 65.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26977-PA 563 GA26977-PA 1..559 1..558 2676 92.5 Plus
Dpse\GA18448-PA 545 GA18448-PA 7..527 14..534 1867 65.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26513-PA 560 GM26513-PA 1..560 1..560 3033 99.8 Plus
Dsec\GM26037-PA 550 GM26037-PA 2..534 9..537 1935 66 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21022-PA 560 GD21022-PA 1..560 1..560 3028 99.6 Plus
Dsim\GD20597-PA 551 GD20597-PA 2..531 9..534 1926 66.2 Plus
Dsim\GD20596-PA 106 GD20596-PA 2..104 9..112 301 56.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22782-PA 563 GJ22782-PA 1..559 1..558 2812 93.9 Plus
Dvir\GJ10066-PA 554 GJ10066-PA 2..545 9..547 1927 65.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13187-PA 561 GK13187-PA 1..557 1..558 2942 97 Plus
Dwil\GK11533-PA 550 GK11533-PA 2..528 8..534 1878 65.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10378-PA 560 GE10378-PA 1..560 1..560 3021 99.3 Plus
Dyak\GE24545-PA 551 GE24545-PA 2..543 9..546 2003 67.2 Plus

RH04128.hyp Sequence

Translation from 145 to 1827

> RH04128.hyp
MSETINTAAQFPSFEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLG
KICDWTNTSNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQK
PPHQRGRFRNMRNSRSGRGRNARGGLNTHGMTTLSGKNVKARDPRHGRGM
GKKFGHRGPPPKMRESSVAVRADWASIEEMDFPRLIKLSLPNIKEGVDIV
TCGTLEYYDKTYDRINVKNEKPLQKIDRIVHTVTTTDDPVIRRLSKTVGN
VFATDAILATIMCSTRSNYSWDIVIEKVGDKVFMDKRDHTEFDLLTVNES
SVEPPTDDDSSCNSPRNLAIEATFINHNFSQQVLKTGDQEPKYKFEESNP
FISEDEDIQVASVGYRYKKWELGSDIVLVARCEHDGVLQTPSGEPQFMTI
KALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAG
SDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRC
IIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ
QVYNYAHNKI*

RH04128.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-3p66-PB 560 CG10161-PB 1..560 1..560 2997 100 Plus
CG4810-PA 551 CG4810-PA 2..543 9..546 1969 66.4 Plus