BDGP Sequence Production Resources |
Search the DGRC for RH04128
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 41 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | eIF-3p66-RB |
Protein status: | RH04128.pep: gold |
Sequenced Size: | 2020 |
Gene | Date | Evidence |
---|---|---|
CG10161 | 2002-01-01 | Sim4 clustering to Release 2 |
eIF-3p66 | 2008-04-29 | Release 5.5 accounting |
eIF-3p66 | 2008-08-15 | Release 5.9 accounting |
eIF-3p66 | 2008-12-18 | 5.12 accounting |
2020 bp (2020 high quality bases) assembled on 2005-10-24
GenBank Submission: BT023923
> RH04128.complete TTTTCAACGCGACAACGGTCCCACTCAACTATTTTCGCAACACGCGACGA TACGAATTTTCCACATTTCTTTGTTGATTTCTGGAAAATCGCTGTATATA GACCGAATAGCCGACTGCAGACTGAGCACCAGGTAAACGCGCGAGATGAG CGAGACCATAAACACCGCGGCTCAGTTCCCGAGCTTCGAGAAGCCGACCG TGCAGTTCAATGAAAAGGGCTGGGGTCCCTGCGAGCTGCCCGATACGTTC AAGGATGTGCCGTACCAGCCGTTCAGCAAGAACGATCGTCTGGGCAAGAT CTGCGACTGGACGAATACGTCGAACAACGACAAGAAGTACCAGAACAAGT ATGCCTCCAGCTTTGGCACGGGCATTCAGTACTCGTACTACCATGAGGAG GACGAGACAACCTTCCACCTGGTGGACACGGCCCGCGTCCAGAAGCCGCC GCACCAGCGCGGCCGGTTCCGCAACATGAGGAATTCGCGTTCCGGTCGTG GCAGGAATGCCCGCGGTGGCCTTAATACTCACGGCATGACGACGCTCAGC GGCAAGAATGTAAAGGCCCGCGATCCGCGCCATGGTCGCGGCATGGGCAA GAAGTTCGGTCATCGCGGACCACCACCAAAGATGCGCGAATCTTCGGTGG CCGTCCGCGCCGATTGGGCATCCATCGAGGAGATGGACTTCCCGCGACTC ATCAAGCTGTCGCTGCCCAACATCAAGGAGGGCGTCGATATTGTCACCTG CGGCACGTTGGAGTACTACGACAAGACCTACGACCGCATCAATGTGAAGA ACGAGAAGCCGCTGCAGAAGATCGATCGCATCGTGCATACGGTGACCACC ACAGACGATCCCGTCATCCGGCGTTTGTCTAAGACCGTCGGCAATGTCTT CGCCACGGACGCCATCCTGGCCACCATCATGTGCTCTACGCGATCGAACT ATTCCTGGGATATTGTCATCGAGAAAGTTGGCGACAAGGTGTTCATGGAC AAGCGTGACCACACCGAGTTCGATCTGTTGACCGTGAACGAGAGCAGCGT GGAACCACCGACCGACGACGACAGCTCATGCAACTCCCCTCGCAACCTGG CCATCGAGGCGACTTTCATTAACCACAACTTTAGCCAGCAGGTGCTTAAG ACTGGAGACCAGGAACCCAAATACAAGTTCGAGGAAAGCAACCCTTTCAT CAGCGAGGACGAAGATATCCAAGTCGCCAGCGTGGGCTACCGCTACAAGA AGTGGGAGCTGGGAAGCGATATTGTCCTGGTAGCGCGTTGCGAGCACGAT GGTGTCCTGCAGACGCCAAGCGGCGAGCCGCAGTTCATGACTATCAAGGC ACTCAACGAGTGGGACTCGAAGTTGGCCAATGGCGTGGAATGGCGTCAAA AGTTGGACACGCAGCGCGGTGCTGTGCTCGCCAACGAGCTGAGGAACAAC GCATGCAAGCTGGCCAAGTGGACTGTGCAGGCCGTCCTGGCCGGGTCCGA TCAGCTAAAGCTCGGCTATGTGTCGCGTATCAATCCGAGAGATCACTCGC GTCACGTCATCCTCGGCACGCAGCAGTTCAAGCCGCATGAATTTGCCACT CAGATCAACCTGAGCATGGACAACGCCTGGGGAATCCTGAGATGCATCAT CGATCTGGTGATGAAGCAGAAGGATGGCAAATACCTGATCATGAAGGACC CCAACAAGCCGATCATCCGTCTGTACGACATCCCAGACAATACTTTCGAC TCCGATGACTCGGACGATGGCGAGGGCGATGACGAAGGTTTCCAGCAGGT CTACAACTACGCGCACAACAAGATTTAGACGCCACGCCCCCCTACTCCTG CATCCCTTCCAGTCTTGGGCTCTTTTGCCACAACCCGCTAAGAATAACCA CAACTGATGTCCTCTAAAGGAAAAGGTCATGTTATAGGCCCTAGCTTAAG CATTTGTATTCGATTTAAATTCAGATATTTCCTAGTAAATCACAGAGGGC GAAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eIF-3p66-RB | 2307 | eIF-3p66-RB | 123..2128 | 2..2007 | 10030 | 100 | Plus |
eIF-3p66.a | 2077 | eIF-3p66.a | 407..2069 | 345..2007 | 8315 | 100 | Plus |
eIF-3p66.a | 2077 | eIF-3p66.a | 3..345 | 2..344 | 1715 | 100 | Plus |
CG4810.a | 2171 | CG4810.a | 1235..1660 | 1330..1755 | 750 | 78.4 | Plus |
CG4810.a | 2171 | CG4810.a | 724..905 | 813..994 | 250 | 75.8 | Plus |
CG4810.a | 2171 | CG4810.a | 140..199 | 253..312 | 210 | 90 | Plus |
CG4810.a | 2171 | CG4810.a | 1009..1058 | 1098..1147 | 145 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19504992..19505723 | 1274..2005 | 3660 | 100 | Plus |
chr3R | 27901430 | chr3R | 19503918..19504554 | 345..981 | 3155 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 19503453..19503795 | 2..344 | 1685 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 19504622..19504917 | 980..1275 | 1480 | 100 | Plus |
chr3R | 27901430 | chr3R | 8018660..8019085 | 1755..1330 | 750 | 78.4 | Minus |
chr3R | 27901430 | chr3R | 8019492..8019824 | 994..662 | 270 | 72.1 | Minus |
chr3R | 27901430 | chr3R | 8020198..8020257 | 312..253 | 210 | 90 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23681586..23682319 | 1274..2007 | 3670 | 100 | Plus |
3R | 32079331 | 3R | 23680512..23681148 | 345..981 | 3185 | 100 | Plus |
3R | 32079331 | 3R | 23680047..23680389 | 2..344 | 1715 | 100 | Plus |
3R | 32079331 | 3R | 23681216..23681511 | 980..1275 | 1480 | 100 | Plus |
3R | 32079331 | 3R | 12193275..12193700 | 1755..1330 | 750 | 78.4 | Minus |
3R | 32079331 | 3R | 12194107..12194439 | 994..662 | 270 | 72.1 | Minus |
3R | 32079331 | 3R | 12194813..12194872 | 312..253 | 210 | 90 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23422417..23423150 | 1274..2007 | 3670 | 100 | Plus |
3R | 31820162 | 3R | 23421343..23421979 | 345..981 | 3185 | 100 | Plus |
3R | 31820162 | 3R | 23420878..23421220 | 2..344 | 1715 | 100 | Plus |
3R | 31820162 | 3R | 23422047..23422342 | 980..1275 | 1480 | 100 | Plus |
3R | 31820162 | 3R | 11934106..11934531 | 1755..1330 | 750 | 78.4 | Minus |
3R | 31820162 | 3R | 11934938..11935119 | 994..813 | 250 | 75.8 | Minus |
3R | 31820162 | 3R | 11935644..11935703 | 312..253 | 210 | 90 | Minus |
3R | 31820162 | 3R | 11934789..11934834 | 1143..1098 | 140 | 86.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19504623..19504915 | 981..1273 | 100 | -> | Plus |
chr3R | 19503451..19503795 | 1..344 | 99 | -> | Plus |
chr3R | 19503918..19504553 | 345..980 | 99 | -> | Plus |
chr3R | 19504992..19505723 | 1274..2005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..1683 | 146..1828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..1683 | 146..1828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..1683 | 146..1828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..1683 | 146..1828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..1683 | 146..1828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..2006 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..2006 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 7..2012 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 1..2006 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eIF-3p66-RB | 7..2012 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23680045..23680389 | 1..344 | 99 | -> | Plus |
3R | 23680512..23681147 | 345..980 | 100 | -> | Plus |
3R | 23681217..23681509 | 981..1273 | 100 | -> | Plus |
3R | 23681586..23682317 | 1274..2005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23680045..23680389 | 1..344 | 99 | -> | Plus |
3R | 23680512..23681147 | 345..980 | 100 | -> | Plus |
3R | 23681217..23681509 | 981..1273 | 100 | -> | Plus |
3R | 23681586..23682317 | 1274..2005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23680045..23680389 | 1..344 | 99 | -> | Plus |
3R | 23680512..23681147 | 345..980 | 100 | -> | Plus |
3R | 23681217..23681509 | 981..1273 | 100 | -> | Plus |
3R | 23681586..23682317 | 1274..2005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19506939..19507231 | 981..1273 | 100 | -> | Plus |
arm_3R | 19505767..19506111 | 1..344 | 99 | -> | Plus |
arm_3R | 19506234..19506869 | 345..980 | 100 | -> | Plus |
arm_3R | 19507308..19508039 | 1274..2005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23420876..23421220 | 1..344 | 99 | -> | Plus |
3R | 23421343..23421978 | 345..980 | 100 | -> | Plus |
3R | 23422048..23422340 | 981..1273 | 100 | -> | Plus |
3R | 23422417..23423148 | 1274..2005 | 100 | Plus |
Translation from 145 to 1827
> RH04128.pep MSETINTAAQFPSFEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLG KICDWTNTSNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQK PPHQRGRFRNMRNSRSGRGRNARGGLNTHGMTTLSGKNVKARDPRHGRGM GKKFGHRGPPPKMRESSVAVRADWASIEEMDFPRLIKLSLPNIKEGVDIV TCGTLEYYDKTYDRINVKNEKPLQKIDRIVHTVTTTDDPVIRRLSKTVGN VFATDAILATIMCSTRSNYSWDIVIEKVGDKVFMDKRDHTEFDLLTVNES SVEPPTDDDSSCNSPRNLAIEATFINHNFSQQVLKTGDQEPKYKFEESNP FISEDEDIQVASVGYRYKKWELGSDIVLVARCEHDGVLQTPSGEPQFMTI KALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAG SDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRC IIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ QVYNYAHNKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16250-PA | 561 | GF16250-PA | 1..557 | 1..558 | 2931 | 96.6 | Plus |
Dana\GF17742-PA | 549 | GF17742-PA | 2..543 | 9..549 | 2009 | 67.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11214-PA | 560 | GG11214-PA | 1..560 | 1..560 | 3018 | 99.1 | Plus |
Dere\GG17155-PA | 551 | GG17155-PA | 2..543 | 9..546 | 1996 | 67.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17455-PA | 563 | GH17455-PA | 1..559 | 1..558 | 2808 | 93.8 | Plus |
Dgri\GH15488-PA | 557 | GH15488-PA | 2..546 | 9..547 | 1839 | 62.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eIF3d1-PB | 560 | CG10161-PB | 1..560 | 1..560 | 2997 | 100 | Plus |
eIF3d2-PA | 551 | CG4810-PA | 2..543 | 9..546 | 1969 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22779-PA | 563 | GI22779-PA | 1..559 | 1..558 | 2803 | 93.8 | Plus |
Dmoj\GI22467-PA | 554 | GI22467-PA | 2..545 | 9..547 | 1900 | 65.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13650-PA | 541 | GL13650-PA | 1..537 | 1..558 | 2530 | 88.8 | Plus |
Dper\GL21571-PA | 545 | GL21571-PA | 7..527 | 14..534 | 1868 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26977-PA | 563 | GA26977-PA | 1..559 | 1..558 | 2676 | 92.5 | Plus |
Dpse\GA18448-PA | 545 | GA18448-PA | 7..527 | 14..534 | 1867 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26513-PA | 560 | GM26513-PA | 1..560 | 1..560 | 3033 | 99.8 | Plus |
Dsec\GM26037-PA | 550 | GM26037-PA | 2..534 | 9..537 | 1935 | 66 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21022-PA | 560 | GD21022-PA | 1..560 | 1..560 | 3028 | 99.6 | Plus |
Dsim\GD20597-PA | 551 | GD20597-PA | 2..531 | 9..534 | 1926 | 66.2 | Plus |
Dsim\GD20596-PA | 106 | GD20596-PA | 2..104 | 9..112 | 301 | 56.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22782-PA | 563 | GJ22782-PA | 1..559 | 1..558 | 2812 | 93.9 | Plus |
Dvir\GJ10066-PA | 554 | GJ10066-PA | 2..545 | 9..547 | 1927 | 65.9 | Plus |
Translation from 145 to 1827
> RH04128.hyp MSETINTAAQFPSFEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLG KICDWTNTSNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQK PPHQRGRFRNMRNSRSGRGRNARGGLNTHGMTTLSGKNVKARDPRHGRGM GKKFGHRGPPPKMRESSVAVRADWASIEEMDFPRLIKLSLPNIKEGVDIV TCGTLEYYDKTYDRINVKNEKPLQKIDRIVHTVTTTDDPVIRRLSKTVGN VFATDAILATIMCSTRSNYSWDIVIEKVGDKVFMDKRDHTEFDLLTVNES SVEPPTDDDSSCNSPRNLAIEATFINHNFSQQVLKTGDQEPKYKFEESNP FISEDEDIQVASVGYRYKKWELGSDIVLVARCEHDGVLQTPSGEPQFMTI KALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAG SDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRC IIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ QVYNYAHNKI*