Clone RH04334 Report

Search the DGRC for RH04334

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:43
Well:34
Vector:pFlc-1
Associated Gene/TranscriptCG16885-RA
Protein status:RH04334.pep: gold
Preliminary Size:780
Sequenced Size:1348

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16885 2001-12-13 Blastp of sequenced clone
CG16885 2002-01-01 Sim4 clustering to Release 2
CG16885 2008-04-29 Release 5.5 accounting
CG16885 2008-08-15 Release 5.9 accounting
CG16885 2008-12-18 5.12 accounting

Clone Sequence Records

RH04334.complete Sequence

1348 bp (1348 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070658

> RH04334.complete
GATTCAGTTAACTGTTGCGGGTTGGTTGAGACATACAAGCCCATCTTGAT
CGCAAAGTGTTGAGGAGCTAACCTAGTGCAAAATGAAATCCATGCTCATT
TTCGGCCTTGTGGCGATGTGCGTGCTGGTGGCCAACGCCAGTGAGGAGGC
ACCCAAGAAGGCCGTCGAGACCGCCGAGCCCGCCGAGAAGAAGCAGGAGA
AGCGCGGCATTGGCCACGGTCTGGGCTACGGATACGGACCATCGGCGGGA
GGCGCCATTCTGGGATCCGGCATCGGTGTTGGAGTTCCAGTGGCTCCCGC
TGTCGCTGAGCTGCCCACCCAGGTGCACACCAACACCGTGGTGAGGACCG
TGCAGGTGCCCTACCAGGTGGAGCGTCACGTTCCCTACCCCGTCGAGAAG
ACCGTCACCTATCCCGTTAAGGTGCCCGTGCCCCAGCCCTACCCCGTGGA
GAAGATCGTCCATGTGCCCGTCAAGCAGATCGTGAAGGTGCCCGTCGAGG
TGCCCCAGCCCTACCCCGTCGAGAAGGTGATCCGTGTGCCCGTGAAGATC
CCAGTTGATCGTCCCTACACCGTCCATGTCGACAAGCCATACCCCGTGCC
CGTGGAGAAGCCCGTGCCATACACCGTCGAGAAGCGTGTGATCCACAAGG
TGCCCGTCCATGTGGAGCGTCCAGTGCCCTACAAGGTGGCCGTGCCCGTG
CCTGTCCACGTTGAGAGCCACGTCAAGCCCGCCGTGGCCGTCACCCACAC
CGTTGCCGCTGCTCCTGCCATCATCAGCCACGGCTACTCCGGACACGGAA
TCTCCGGATACGGAATTTCCGGACACGGAATCTCCTCCTACGGCAGCTCC
TCTTACGGCGGCTCCGCCCACGGTGGCTACCTCCACAAAAAGTAGATGAA
ATCGCAATGCTGTCGAGGGCCAAGCGAGAAGTGAAGTCGGGTGAAGGCGA
GCGAACCAACCAACAAGTCGAAAGTATCCAACAGACATTAAGAATCAAGC
ACCCCTCCCTCTCTTTCCACGCCCAGCAACCGCCAACGTACGACTTACAA
ATTTAGTTTTAGTTTGTGATACCAACCGAAATTCTGGAAGGATCGGAACC
AGGAGAAAATCACACAACTGACGCAATCCATTATAGAAAGCTTGCCAAAA
CCCATCCGGGGCGTTTGAAAAGTGCCTGTCTCCTGGCATCCAAATCCATC
GAGTGTACAGTTCTTTTGTAGACAATCACAGAGAAATAACTGCTGACGAG
TTGCTCCTTCGACTTTTTCACGTAAATTTCTTTTCTATGAAATATTTGTA
CATATTTAAATAATGTAAATAAAACGAAAATTAAAAAAAAAAAAAAAA

RH04334.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-RA 1501 CG16885-RA 135..1477 2..1344 6700 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13931289..13932527 1332..94 6165 99.8 Minus
chr2L 23010047 chr2L 13933330..13933422 94..2 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:19:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13932547..13933797 1344..94 6240 99.9 Minus
2L 23513712 2L 13934598..13934690 94..2 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13932547..13933797 1344..94 6240 99.9 Minus
2L 23513712 2L 13934598..13934690 94..2 465 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:52:57 has no hits.

RH04334.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:53:48 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13933330..13933422 1..94 98   Minus
chr2L 13931324..13932526 95..1297 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:07 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 1..813 83..895 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:12 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 1..813 83..895 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:14 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 1..813 83..895 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:18 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 1..813 83..895 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:20 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 1..813 83..895 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:48:20 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 2..1332 2..1332 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:12 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 1..1331 2..1332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:14 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 2..1333 1..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:19 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 2..1332 2..1332 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:20 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 2..1333 1..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:48 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13932559..13933796 95..1332 99 <- Minus
2L 13934598..13934690 1..94 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:48 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13932559..13933796 95..1332 99 <- Minus
2L 13934598..13934690 1..94 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:48 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13932559..13933796 95..1332 99 <- Minus
2L 13934598..13934690 1..94 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:14 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13932559..13933796 95..1332 99 <- Minus
arm_2L 13934598..13934690 1..94 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:20 Download gff for RH04334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13932559..13933796 95..1332 99 <- Minus
2L 13934598..13934690 1..94 98   Minus

RH04334.pep Sequence

Translation from 82 to 894

> RH04334.pep
MKSMLIFGLVAMCVLVANASEEAPKKAVETAEPAEKKQEKRGIGHGLGYG
YGPSAGGAILGSGIGVGVPVAPAVAELPTQVHTNTVVRTVQVPYQVERHV
PYPVEKTVTYPVKVPVPQPYPVEKIVHVPVKQIVKVPVEVPQPYPVEKVI
RVPVKIPVDRPYTVHVDKPYPVPVEKPVPYTVEKRVIHKVPVHVERPVPY
KVAVPVPVHVESHVKPAVAVTHTVAAAPAIISHGYSGHGISGYGISGHGI
SSYGSSSYGGSAHGGYLHKK*

RH04334.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15610-PA 281 GF15610-PA 1..281 1..270 1157 87.9 Plus
Dana\GF13116-PA 330 GF13116-PA 2..158 3..183 218 41.6 Plus
Dana\GF15609-PA 277 GF15609-PA 1..275 4..266 169 39.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10172-PA 280 GG10172-PA 1..245 1..245 1067 95.9 Plus
Dere\GG22201-PA 328 GG22201-PA 2..198 3..215 226 39 Plus
Dere\GG10173-PA 373 GG10173-PA 80..278 83..207 182 38.7 Plus
Dere\GG10171-PA 277 GG10171-PA 1..230 4..196 167 43.5 Plus
Dere\GG23953-PA 521 GG23953-PA 184..304 86..212 163 47.4 Plus
Dere\GG10173-PA 373 GG10173-PA 149..315 77..214 147 43.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20491-PA 338 GH20491-PA 2..206 3..215 220 36.3 Plus
Dgri\GH10609-PA 306 GH10609-PA 1..180 79..210 177 42.4 Plus
Dgri\GH20491-PA 338 GH20491-PA 139..258 90..211 166 50 Plus
Dgri\GH10609-PA 306 GH10609-PA 54..203 88..207 165 48 Plus
Dgri\GH20491-PA 338 GH20491-PA 158..287 91..206 146 47.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-PA 270 CG16885-PA 1..270 1..270 1420 100 Plus
CG16884-PA 277 CG16884-PA 7..272 9..238 382 41.8 Plus
CG30101-PA 328 CG30101-PA 3..198 4..215 334 39.2 Plus
CG16886-PB 358 CG16886-PB 138..301 72..220 327 48.2 Plus
CG16886-PA 373 CG16886-PA 138..301 72..220 327 48.2 Plus
CG16886-PB 358 CG16886-PB 38..284 22..230 320 40 Plus
CG16886-PA 373 CG16886-PA 38..284 22..230 320 40 Plus
CG30101-PA 328 CG30101-PA 131..328 90..243 278 40.4 Plus
CG30101-PA 328 CG30101-PA 85..263 64..224 268 41.7 Plus
CG16886-PB 358 CG16886-PB 159..323 77..214 268 42.4 Plus
CG13138-PC 549 CG13138-PC 180..304 82..212 239 47.5 Plus
CG13138-PB 549 CG13138-PB 180..304 82..212 239 47.5 Plus
CG16886-PA 373 CG16886-PA 177..370 77..243 228 36.9 Plus
CG16886-PB 358 CG16886-PB 177..326 77..201 212 42.2 Plus
CG33299-PC 172 CG33299-PC 17..168 39..189 211 35.8 Plus
CG33299-PB 193 CG33299-PB 38..189 39..189 211 35.8 Plus
CG7031-PC 474 CG7031-PC 371..470 87..190 186 48.1 Plus
CG7031-PB 475 CG7031-PB 372..471 87..190 186 48.1 Plus
CG7031-PA 475 CG7031-PA 372..471 87..190 186 48.1 Plus
CG7031-PC 474 CG7031-PC 351..462 95..204 179 41.4 Plus
CG7031-PB 475 CG7031-PB 352..463 95..204 179 41.4 Plus
CG7031-PA 475 CG7031-PA 352..463 95..204 179 41.4 Plus
CG10953-PB 278 CG10953-PB 68..212 70..217 174 31.1 Plus
CG10953-PA 278 CG10953-PA 68..212 70..217 174 31.1 Plus
CG16886-PA 373 CG16886-PA 233..373 92..243 169 37.7 Plus
CG6280-PA 1093 CG6280-PA 768..915 93..235 165 33.5 Plus
CG16886-PB 358 CG16886-PB 233..349 92..213 160 37.9 Plus
CG13138-PC 549 CG13138-PC 198..309 66..201 160 39.1 Plus
CG13138-PB 549 CG13138-PB 198..309 66..201 160 39.1 Plus
CG13840-PC 466 CG13840-PC 328..461 73..239 160 32 Plus
CG10953-PB 278 CG10953-PB 21..216 47..231 157 28.6 Plus
CG10953-PA 278 CG10953-PA 21..216 47..231 157 28.6 Plus
CG10953-PB 278 CG10953-PB 122..259 66..217 150 28.9 Plus
CG10953-PA 278 CG10953-PA 122..259 66..217 150 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21035-PA 328 GI21035-PA 2..200 3..215 234 39.1 Plus
Dmoj\GI17398-PA 277 GI17398-PA 3..273 5..257 193 41.8 Plus
Dmoj\GI17400-PA 371 GI17400-PA 128..279 86..207 176 45.6 Plus
Dmoj\GI17400-PA 371 GI17400-PA 166..316 90..214 158 47.1 Plus
Dmoj\GI21035-PA 328 GI21035-PA 152..285 91..210 156 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21070-PA 285 GL21070-PA 1..285 1..270 1046 83.9 Plus
Dper\GL10668-PA 309 GL10668-PA 2..191 3..212 231 40.1 Plus
Dper\GL21071-PA 362 GL21071-PA 127..279 85..207 174 49 Plus
Dper\GL21068-PA 286 GL21068-PA 1..284 4..266 164 40.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14195-PA 285 GA14195-PA 1..285 1..270 1046 83.9 Plus
Dpse\GA15650-PA 337 GA15650-PA 2..204 3..215 216 37.7 Plus
Dpse\GA29060-PA 362 GA29060-PA 127..279 85..207 174 49 Plus
Dpse\GA14194-PA 286 GA14194-PA 1..284 4..266 164 40.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15034-PA 156 GM15034-PA 1..148 1..148 718 99.3 Plus
Dsec\GM19988-PA 328 GM19988-PA 2..198 3..215 226 39 Plus
Dsec\GM15040-PA 373 GM15040-PA 127..278 86..207 170 45.6 Plus
Dsec\GM15027-PA 277 GM15027-PA 1..230 4..196 166 43.5 Plus
Dsec\GM11813-PA 549 GM11813-PA 184..304 86..212 164 48.2 Plus
Dsec\GM15040-PA 373 GM15040-PA 149..315 77..214 149 43.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22029-PA 255 GD22029-PA 1..230 1..250 1055 91.2 Plus
Dsim\GD25483-PA 328 GD25483-PA 2..198 3..215 226 39 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18078-PA 457 GJ18078-PA 1..233 12..224 655 70.8 Plus
Dvir\GJ21962-PA 335 GJ21962-PA 58..202 81..215 204 49 Plus
Dvir\GJ18077-PA 286 GJ18077-PA 3..282 5..257 198 41.8 Plus
Dvir\GJ18078-PA 457 GJ18078-PA 193..348 56..207 181 48.5 Plus
Dvir\GJ21962-PA 335 GJ21962-PA 135..283 90..206 169 48.4 Plus
Dvir\GJ18078-PA 457 GJ18078-PA 265..401 94..231 156 48.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15112-PA 286 GK15112-PA 1..286 1..270 980 82.9 Plus
Dwil\GK15111-PA 282 GK15111-PA 1..280 4..266 235 40.1 Plus
Dwil\GK21891-PA 330 GK21891-PA 2..183 3..208 223 42.9 Plus
Dwil\GK21891-PA 330 GK21891-PA 118..283 53..206 171 43.9 Plus
Dwil\GK15114-PA 377 GK15114-PA 76..219 105..206 154 45.2 Plus
Dwil\GK15114-PA 377 GK15114-PA 125..276 86..207 147 45.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25278-PA 270 GE25278-PA 1..270 1..270 1241 95.2 Plus
Dyak\GE14199-PA 331 GE14199-PA 2..198 3..215 226 39 Plus
Dyak\GE25289-PA 373 GE25289-PA 127..278 86..207 170 45.6 Plus
Dyak\GE25267-PA 277 GE25267-PA 1..230 4..196 166 43.1 Plus
Dyak\GE26163-PA 535 GE26163-PA 184..304 86..212 161 47.4 Plus
Dyak\GE25289-PA 373 GE25289-PA 149..315 77..214 148 43.9 Plus

RH04334.hyp Sequence

Translation from 82 to 894

> RH04334.hyp
MKSMLIFGLVAMCVLVANASEEAPKKAVETAEPAEKKQEKRGIGHGLGYG
YGPSAGGAILGSGIGVGVPVAPAVAELPTQVHTNTVVRTVQVPYQVERHV
PYPVEKTVTYPVKVPVPQPYPVEKIVHVPVKQIVKVPVEVPQPYPVEKVI
RVPVKIPVDRPYTVHVDKPYPVPVEKPVPYTVEKRVIHKVPVHVERPVPY
KVAVPVPVHVESHVKPAVAVTHTVAAAPAIISHGYSGHGISGYGISGHGI
SSYGSSSYGGSAHGGYLHKK*

RH04334.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-PA 270 CG16885-PA 1..270 1..270 1420 100 Plus
CG16884-PA 277 CG16884-PA 7..272 9..238 382 41.8 Plus
CG30101-PA 328 CG30101-PA 3..198 4..215 334 39.2 Plus
CG16886-PB 358 CG16886-PB 138..301 72..220 327 48.2 Plus
CG16886-PA 373 CG16886-PA 138..301 72..220 327 48.2 Plus
CG16886-PB 358 CG16886-PB 38..284 22..230 320 40 Plus
CG30101-PA 328 CG30101-PA 131..328 90..243 278 40.4 Plus
CG30101-PA 328 CG30101-PA 85..263 64..224 268 41.7 Plus
CG16886-PB 358 CG16886-PB 159..323 77..214 268 42.4 Plus
CG16886-PB 358 CG16886-PB 177..326 77..201 212 42.2 Plus
CG16886-PB 358 CG16886-PB 233..349 92..213 160 37.9 Plus