Clone RH04401 Report

Search the DGRC for RH04401

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:44
Well:1
Vector:pFlc-1
Associated Gene/Transcriptphyl-RA
Protein status:RH04401.pep: gold
Sequenced Size:1728

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10108 2002-01-01 Sim4 clustering to Release 2
CG10108 2002-11-12 Blastp of sequenced clone
CG10108 2003-01-01 Sim4 clustering to Release 3
phyl 2008-04-29 Release 5.5 accounting
phyl 2008-08-15 Release 5.9 accounting
phyl 2008-12-18 5.12 accounting

Clone Sequence Records

RH04401.complete Sequence

1728 bp (1728 high quality bases) assembled on 2002-11-12

GenBank Submission: AY075531

> RH04401.complete
GATTCGAAATTTGTGCGTGCAACGCGAAGGACGTGCCGCTCCGTAGCTCG
CTGTCCCGCTCTCGCTCTCCCCGCTCTCTCGCTCTGTCGCACGCGTTCGC
CGCTTGGCATTTGTTGTTTGCCACATTTTCGCGGCACCCCAAAAAATCGT
GAAAATACAAATACAATACGAGTGCGAAAGTCGAATATCGGCAGAAGTTA
GTGCGACCTTTGGTGACGTCAGAGGCTGGGAAAAATCGCCAGGATGTCTA
CCAATCAGCAGCAGCAGGCGAATCCTTCGGCGGCCGTTGCCGCACCCGCC
GCCTCCTCGGAATACCTGAAACGCACCTGCCTCATCTGCGGCTGCCACAC
CAACCAGACGATCAATATCTACGAGCCCCGCTCCGGACCCAATATCGTTC
AGCTAATCCAGGCGAAATTCAAGTTTCAGCCCCTGAACGAGGACAAATTC
CTCTGCTTTAGCTGCAACAACTGGCTGATCAACTGGCACTCCCTGCAGGC
GGTCAACAGCAATGAGGCCGAAAGCCAGAGCCAAAGTCCCTCGCACATGG
GCAACAGTGTGCTGCAGCAGGAAAGGACGAAGCTCCGTCCGGTGGCGATG
GTTCGACCCACGGTGCGAGTGCAGCCCCAATCGCAGCCCCAACTGCAGCC
CCAAGTTCCAATTAATCCCACACCCGCACCCATAGTCTATTCGAAGCGAA
GAGCCAGCAGACGCAGTGCCTCCGTCAGCCGGATGAGCCGAGTGCTGCGC
CAGTGTTGTGTGGAGAGTCTGCGGCGGAGTCCCAAGAAGCGCAATCAGCA
GTCGGTGTTCGTCTGTCTTAGGCCGCAGGGCCAGAAGAGGAGCAATGCGA
TCTGCAAGGTGGAGTGTGTGGCGCCGCGCCGGAAACCAGTGGAGCGACTG
GTTAAGGATGTGGCAGCTACAGCTACACCCACACCAGTGCTCAATACACA
ATCCACGCCCACTTACCAAAGATTCCCGCAGCCCAGTGTGGATGGCAAAG
TAGTGGCCATGTTCCGTCGACTGGGAACCACACTCAGTCGGGAAGAACCC
GCCGCATATTCAGCAGAATCAAACCCCGCCTGCTCGAAACTCCCGCAGAT
CATGAGTCCGCTCAAAGAGGCGCCGCGCTGGACGCGGGACCTCGATGATG
ATGAGATACTGCTGGAATTCGATACCGCCATATCCGAAGTCCTGCCAACT
GCCCGCTATCAGGTTACCCACGAGGAGAACAAGGAAAACCAGCAGGCACA
AGAAATGGAGCTGGAGCTGGAGGAGGAGGAAGAAGTGGATGGCCGAGCGG
AACTGGAAGTGGTGCAGGAGGCGGAAGCGCCACTGGAACCGCAGAGCCAC
CACAAACAAGGAAACAGCCACCAAAATTCCCACCAAGCTTCAATCCAACT
CGCTGGCCTGCGATTACCAATGGGCCTTAGCATTAGCCTCGTCTAAAAAC
GATGGGTCCAATTGATGCCCCGCACACAAAATAGTCAAATTGCATGCACA
ATACGCAAATTATGAGCATTAGCAAATGTCTAAGTTAATAGTACCTCGAT
TACATTTTAATTGTTAGTCAAATACCTTAATTAATTAGCGGACAAAAAAA
AACACACACACACAAAACAAACAACAAAAGACCTAAGAATGTTAAGTTAA
CGGATGTGGAAAGCTATATTTAAAATATACATATTAGTCGTAGGCAAATC
CCTGACTTACCCAAAAAAAAAAAAAAAA

RH04401.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
phyl-RA 1911 phyl-RA 60..1786 2..1728 8620 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10314767..10316049 1712..424 5845 97.2 Minus
chr2R 21145070 chr2R 10319208..10319635 429..2 2140 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:19:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14427446..14428750 1728..424 6510 99.9 Minus
2R 25286936 2R 14431908..14432335 429..2 2140 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14428645..14429949 1728..424 6510 99.9 Minus
2R 25260384 2R 14433107..14433534 429..2 2140 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:47:44 has no hits.

RH04401.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:49:07 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10314767..10316043 430..1712 95 <- Minus
chr2R 10319208..10319635 1..429 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:10 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1203 244..1446 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:45 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1203 244..1446 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:25 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1203 244..1446 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:58 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1203 244..1446 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:19 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1203 244..1446 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:24:07 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1711 2..1712 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:45 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1711 2..1712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:25 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 2..1713 1..1712 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:54:58 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 1..1711 2..1712 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:19 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
phyl-RA 2..1713 1..1712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:07 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14427462..14428744 430..1712 100 <- Minus
2R 14431908..14432335 1..429 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:07 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14427462..14428744 430..1712 100 <- Minus
2R 14431908..14432335 1..429 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:07 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14427462..14428744 430..1712 100 <- Minus
2R 14431908..14432335 1..429 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:25 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10314967..10316249 430..1712 100 <- Minus
arm_2R 10319413..10319840 1..429 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:18 Download gff for RH04401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14428661..14429943 430..1712 100 <- Minus
2R 14433107..14433534 1..429 99   Minus

RH04401.hyp Sequence

Translation from 243 to 1445

> RH04401.hyp
MSTNQQQQANPSAAVAAPAASSEYLKRTCLICGCHTNQTINIYEPRSGPN
IVQLIQAKFKFQPLNEDKFLCFSCNNWLINWHSLQAVNSNEAESQSQSPS
HMGNSVLQQERTKLRPVAMVRPTVRVQPQSQPQLQPQVPINPTPAPIVYS
KRRASRRSASVSRMSRVLRQCCVESLRRSPKKRNQQSVFVCLRPQGQKRS
NAICKVECVAPRRKPVERLVKDVAATATPTPVLNTQSTPTYQRFPQPSVD
GKVVAMFRRLGTTLSREEPAAYSAESNPACSKLPQIMSPLKEAPRWTRDL
DDDEILLEFDTAISEVLPTARYQVTHEENKENQQAQEMELELEEEEEVDG
RAELEVVQEAEAPLEPQSHHKQGNSHQNSHQASIQLAGLRLPMGLSISLV
*

RH04401.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
phyl-PA 400 CG10108-PA 1..400 1..400 2065 100 Plus

RH04401.pep Sequence

Translation from 243 to 1445

> RH04401.pep
MSTNQQQQANPSAAVAAPAASSEYLKRTCLICGCHTNQTINIYEPRSGPN
IVQLIQAKFKFQPLNEDKFLCFSCNNWLINWHSLQAVNSNEAESQSQSPS
HMGNSVLQQERTKLRPVAMVRPTVRVQPQSQPQLQPQVPINPTPAPIVYS
KRRASRRSASVSRMSRVLRQCCVESLRRSPKKRNQQSVFVCLRPQGQKRS
NAICKVECVAPRRKPVERLVKDVAATATPTPVLNTQSTPTYQRFPQPSVD
GKVVAMFRRLGTTLSREEPAAYSAESNPACSKLPQIMSPLKEAPRWTRDL
DDDEILLEFDTAISEVLPTARYQVTHEENKENQQAQEMELELEEEEEVDG
RAELEVVQEAEAPLEPQSHHKQGNSHQNSHQASIQLAGLRLPMGLSISLV
*

RH04401.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11350-PA 450 GF11350-PA 25..450 23..400 1135 67.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22422-PA 403 GG22422-PA 1..403 1..400 1613 89.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22992-PA 431 GH22992-PA 30..431 24..400 691 44.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
phyl-PA 400 CG10108-PA 1..400 1..400 2065 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18960-PA 409 GI18960-PA 30..144 23..121 450 76.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11399-PA 431 GL11399-PA 1..431 1..400 1055 56.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10078-PA 431 GA10078-PA 1..431 1..400 1033 56.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20209-PA 404 GM20209-PA 1..404 1..400 1736 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25679-PA 439 GD25679-PA 1..439 1..400 1687 87.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21567-PA 390 GJ21567-PA 17..390 23..400 763 46.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17893-PA 372 GK17893-PA 24..371 23..399 747 50.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12312-PA 397 GE12312-PA 24..397 23..400 1622 89.2 Plus