BDGP Sequence Production Resources |
Search the DGRC for RH04401
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 44 |
Well: | 1 |
Vector: | pFlc-1 |
Associated Gene/Transcript | phyl-RA |
Protein status: | RH04401.pep: gold |
Sequenced Size: | 1728 |
Gene | Date | Evidence |
---|---|---|
CG10108 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10108 | 2002-11-12 | Blastp of sequenced clone |
CG10108 | 2003-01-01 | Sim4 clustering to Release 3 |
phyl | 2008-04-29 | Release 5.5 accounting |
phyl | 2008-08-15 | Release 5.9 accounting |
phyl | 2008-12-18 | 5.12 accounting |
1728 bp (1728 high quality bases) assembled on 2002-11-12
GenBank Submission: AY075531
> RH04401.complete GATTCGAAATTTGTGCGTGCAACGCGAAGGACGTGCCGCTCCGTAGCTCG CTGTCCCGCTCTCGCTCTCCCCGCTCTCTCGCTCTGTCGCACGCGTTCGC CGCTTGGCATTTGTTGTTTGCCACATTTTCGCGGCACCCCAAAAAATCGT GAAAATACAAATACAATACGAGTGCGAAAGTCGAATATCGGCAGAAGTTA GTGCGACCTTTGGTGACGTCAGAGGCTGGGAAAAATCGCCAGGATGTCTA CCAATCAGCAGCAGCAGGCGAATCCTTCGGCGGCCGTTGCCGCACCCGCC GCCTCCTCGGAATACCTGAAACGCACCTGCCTCATCTGCGGCTGCCACAC CAACCAGACGATCAATATCTACGAGCCCCGCTCCGGACCCAATATCGTTC AGCTAATCCAGGCGAAATTCAAGTTTCAGCCCCTGAACGAGGACAAATTC CTCTGCTTTAGCTGCAACAACTGGCTGATCAACTGGCACTCCCTGCAGGC GGTCAACAGCAATGAGGCCGAAAGCCAGAGCCAAAGTCCCTCGCACATGG GCAACAGTGTGCTGCAGCAGGAAAGGACGAAGCTCCGTCCGGTGGCGATG GTTCGACCCACGGTGCGAGTGCAGCCCCAATCGCAGCCCCAACTGCAGCC CCAAGTTCCAATTAATCCCACACCCGCACCCATAGTCTATTCGAAGCGAA GAGCCAGCAGACGCAGTGCCTCCGTCAGCCGGATGAGCCGAGTGCTGCGC CAGTGTTGTGTGGAGAGTCTGCGGCGGAGTCCCAAGAAGCGCAATCAGCA GTCGGTGTTCGTCTGTCTTAGGCCGCAGGGCCAGAAGAGGAGCAATGCGA TCTGCAAGGTGGAGTGTGTGGCGCCGCGCCGGAAACCAGTGGAGCGACTG GTTAAGGATGTGGCAGCTACAGCTACACCCACACCAGTGCTCAATACACA ATCCACGCCCACTTACCAAAGATTCCCGCAGCCCAGTGTGGATGGCAAAG TAGTGGCCATGTTCCGTCGACTGGGAACCACACTCAGTCGGGAAGAACCC GCCGCATATTCAGCAGAATCAAACCCCGCCTGCTCGAAACTCCCGCAGAT CATGAGTCCGCTCAAAGAGGCGCCGCGCTGGACGCGGGACCTCGATGATG ATGAGATACTGCTGGAATTCGATACCGCCATATCCGAAGTCCTGCCAACT GCCCGCTATCAGGTTACCCACGAGGAGAACAAGGAAAACCAGCAGGCACA AGAAATGGAGCTGGAGCTGGAGGAGGAGGAAGAAGTGGATGGCCGAGCGG AACTGGAAGTGGTGCAGGAGGCGGAAGCGCCACTGGAACCGCAGAGCCAC CACAAACAAGGAAACAGCCACCAAAATTCCCACCAAGCTTCAATCCAACT CGCTGGCCTGCGATTACCAATGGGCCTTAGCATTAGCCTCGTCTAAAAAC GATGGGTCCAATTGATGCCCCGCACACAAAATAGTCAAATTGCATGCACA ATACGCAAATTATGAGCATTAGCAAATGTCTAAGTTAATAGTACCTCGAT TACATTTTAATTGTTAGTCAAATACCTTAATTAATTAGCGGACAAAAAAA AACACACACACACAAAACAAACAACAAAAGACCTAAGAATGTTAAGTTAA CGGATGTGGAAAGCTATATTTAAAATATACATATTAGTCGTAGGCAAATC CCTGACTTACCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
phyl-RA | 1911 | phyl-RA | 60..1786 | 2..1728 | 8620 | 99.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10314767..10316043 | 430..1712 | 95 | <- | Minus |
chr2R | 10319208..10319635 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1203 | 244..1446 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1203 | 244..1446 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1203 | 244..1446 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1203 | 244..1446 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1203 | 244..1446 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1711 | 2..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1711 | 2..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 2..1713 | 1..1712 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 1..1711 | 2..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phyl-RA | 2..1713 | 1..1712 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14427462..14428744 | 430..1712 | 100 | <- | Minus |
2R | 14431908..14432335 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14427462..14428744 | 430..1712 | 100 | <- | Minus |
2R | 14431908..14432335 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14427462..14428744 | 430..1712 | 100 | <- | Minus |
2R | 14431908..14432335 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10314967..10316249 | 430..1712 | 100 | <- | Minus |
arm_2R | 10319413..10319840 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14428661..14429943 | 430..1712 | 100 | <- | Minus |
2R | 14433107..14433534 | 1..429 | 99 | Minus |
Translation from 243 to 1445
> RH04401.hyp MSTNQQQQANPSAAVAAPAASSEYLKRTCLICGCHTNQTINIYEPRSGPN IVQLIQAKFKFQPLNEDKFLCFSCNNWLINWHSLQAVNSNEAESQSQSPS HMGNSVLQQERTKLRPVAMVRPTVRVQPQSQPQLQPQVPINPTPAPIVYS KRRASRRSASVSRMSRVLRQCCVESLRRSPKKRNQQSVFVCLRPQGQKRS NAICKVECVAPRRKPVERLVKDVAATATPTPVLNTQSTPTYQRFPQPSVD GKVVAMFRRLGTTLSREEPAAYSAESNPACSKLPQIMSPLKEAPRWTRDL DDDEILLEFDTAISEVLPTARYQVTHEENKENQQAQEMELELEEEEEVDG RAELEVVQEAEAPLEPQSHHKQGNSHQNSHQASIQLAGLRLPMGLSISLV *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
phyl-PA | 400 | CG10108-PA | 1..400 | 1..400 | 2065 | 100 | Plus |
Translation from 243 to 1445
> RH04401.pep MSTNQQQQANPSAAVAAPAASSEYLKRTCLICGCHTNQTINIYEPRSGPN IVQLIQAKFKFQPLNEDKFLCFSCNNWLINWHSLQAVNSNEAESQSQSPS HMGNSVLQQERTKLRPVAMVRPTVRVQPQSQPQLQPQVPINPTPAPIVYS KRRASRRSASVSRMSRVLRQCCVESLRRSPKKRNQQSVFVCLRPQGQKRS NAICKVECVAPRRKPVERLVKDVAATATPTPVLNTQSTPTYQRFPQPSVD GKVVAMFRRLGTTLSREEPAAYSAESNPACSKLPQIMSPLKEAPRWTRDL DDDEILLEFDTAISEVLPTARYQVTHEENKENQQAQEMELELEEEEEVDG RAELEVVQEAEAPLEPQSHHKQGNSHQNSHQASIQLAGLRLPMGLSISLV *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11350-PA | 450 | GF11350-PA | 25..450 | 23..400 | 1135 | 67.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22422-PA | 403 | GG22422-PA | 1..403 | 1..400 | 1613 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22992-PA | 431 | GH22992-PA | 30..431 | 24..400 | 691 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
phyl-PA | 400 | CG10108-PA | 1..400 | 1..400 | 2065 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18960-PA | 409 | GI18960-PA | 30..144 | 23..121 | 450 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11399-PA | 431 | GL11399-PA | 1..431 | 1..400 | 1055 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10078-PA | 431 | GA10078-PA | 1..431 | 1..400 | 1033 | 56.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20209-PA | 404 | GM20209-PA | 1..404 | 1..400 | 1736 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25679-PA | 439 | GD25679-PA | 1..439 | 1..400 | 1687 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21567-PA | 390 | GJ21567-PA | 17..390 | 23..400 | 763 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17893-PA | 372 | GK17893-PA | 24..371 | 23..399 | 747 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12312-PA | 397 | GE12312-PA | 24..397 | 23..400 | 1622 | 89.2 | Plus |