BDGP Sequence Production Resources |
Search the DGRC for RH04488
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 44 |
Well: | 88 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5325-RB |
Protein status: | RH04488.pep: wuzgold |
Preliminary Size: | 1208 |
Sequenced Size: | 1275 |
Gene | Date | Evidence |
---|---|---|
CG5325 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5325 | 2003-02-13 | Blastp of sequenced clone |
CG5325 | 2008-04-29 | Release 5.5 accounting |
CG5325 | 2008-08-15 | Release 5.9 accounting |
CG5325 | 2008-12-18 | 5.12 accounting |
1275 bp (1275 high quality bases) assembled on 2003-02-13
GenBank Submission: BT009961
> RH04488.complete ACAGAGTCTTTATTTTTTACCATTTCCCACCCACCACGAAATCAAGGAAA AGCATCCCGAAATTGCACAATGTCCGAAGAAAAGAAGAATGGCGATGAAT TAAACGACTTGCTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCC GGTGACCAAAAGGAGCCGTCCGCATCATCGGATGTGGCGACCAACGCTGG ACCTGAGGGCTCCGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGG TGCTGGCCGATCGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGT GGCGATATTCCGCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGTTT CAAAAAGATGGCCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGG CCACCGACGAGGATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTC AAGGGTCTGCAAGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAA CGACATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCC TGAAAATGAAATATGAATTCTCCTTGCTCAATCATTAAACAATCCCCGTT TGACAGGCTGGCGAGGGTGATGGAAACATGTTCCTACCATTCATGGAGGG CATGATGCAGAGCCTGCTCTCGGCGGAGATTCTGTTGCCCAGCATCCGGG AGCTGCTGGAGAAGTACCCCAAGTACCTCGAGGAGAACGACGCCAAGCTC TCCGCTGAGGACAAGGAAAGGTACCAGAAGCAGATGGAGCTGTACAAGGT GATTGAGGGGCATTTACAGAGCGAGAAGACCGAGGATTCGGCCGCCGTGA AGCGAGAGAAGTTCCGCGTCGTGCTGGACGACATGCGCAAACTGCAAGAC TACGGCCAGCCGCCGCCAGAGATTCTGGCCGAGACGGGCGGCGACTTGCC CTTCGGCGATCCCACTGCCGGCGTAGCAGCCGGCGGTCCCGGTCCCCAGT GCCCAACCATGTAGTGGCTGACGGAGCACGATAGTCTCGTGGTGTGCCAA TTGGTTAACTGTTGAGTGTTGCACATTTTTTAGGCTAAGGCAAATTTGTA TTTTATTTTATCACCGACAAAACAATACGGCGGTCGCTAATGGTTATCAC CTCTCTCTTCAATCAAGCTATTATTTTCGTATTAACTGTTGGTTTATTAA GTAGTTCTATACCTAAATACAATGCCTCGAAATACACCTAGAGGAAGAAG CGAAAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5325-RB | 1330 | CG5325-RB | 37..1285 | 5..1253 | 6245 | 100 | Plus |
CG5325-RA | 1327 | CG5325-RA | 635..1282 | 606..1253 | 3240 | 100 | Plus |
CG5325.a | 1360 | CG5325.a | 714..1360 | 606..1252 | 3235 | 100 | Plus |
CG5325-RA | 1327 | CG5325-RA | 100..636 | 5..541 | 2685 | 100 | Plus |
CG5325.a | 1360 | CG5325.a | 179..715 | 5..541 | 2685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 12092837..12093378 | 232..773 | 2695 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 12093431..12093915 | 769..1253 | 2410 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 12092658..12092775 | 119..236 | 590 | 100 | Plus |
chr2L | 23010047 | chr2L | 12092461..12092577 | 5..121 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12094173..12094714 | 232..773 | 2695 | 99.8 | Plus |
2L | 23513712 | 2L | 12094767..12095251 | 769..1253 | 2425 | 100 | Plus |
2L | 23513712 | 2L | 12093994..12094111 | 119..236 | 590 | 100 | Plus |
2L | 23513712 | 2L | 12093797..12093913 | 5..121 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12094173..12094714 | 232..773 | 2695 | 99.8 | Plus |
2L | 23513712 | 2L | 12094767..12095251 | 769..1253 | 2425 | 100 | Plus |
2L | 23513712 | 2L | 12093994..12094111 | 119..236 | 590 | 100 | Plus |
2L | 23513712 | 2L | 12093797..12093913 | 5..121 | 585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 12092455..12092574 | 1..118 | 97 | -> | Plus |
chr2L | 12092658..12092775 | 119..236 | 100 | -> | Plus |
chr2L | 12092842..12093375 | 237..770 | 100 | -> | Plus |
chr2L | 12093433..12093915 | 771..1253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5325-RB | 1..519 | 70..588 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5325-RB | 1..519 | 70..588 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex19-RA | 1..472 | 70..541 | 100 | == | Plus |
Pex19-RA | 473..879 | 608..1014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5325-RB | 1..519 | 70..588 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex19-RA | 1..472 | 70..541 | 100 | == | Plus |
Pex19-RA | 473..879 | 608..1014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5325-RB | 21..716 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5325-RB | 21..1274 | 1..1252 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex19-RA | 30..563 | 1..532 | 99 | == | Plus |
Pex19-RA | 564..1217 | 600..1252 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5325-RB | 21..716 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex19-RA | 30..563 | 1..532 | 99 | == | Plus |
Pex19-RA | 564..1217 | 600..1252 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12093791..12093910 | 1..118 | 97 | -> | Plus |
2L | 12093994..12094111 | 119..236 | 100 | -> | Plus |
2L | 12094178..12094711 | 237..770 | 100 | -> | Plus |
2L | 12094769..12095251 | 771..1253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12093791..12093910 | 1..118 | 97 | -> | Plus |
2L | 12093994..12094111 | 119..236 | 100 | -> | Plus |
2L | 12094178..12094711 | 237..770 | 100 | -> | Plus |
2L | 12094769..12095251 | 771..1253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12093791..12093910 | 1..118 | 97 | -> | Plus |
2L | 12093994..12094111 | 119..236 | 100 | -> | Plus |
2L | 12094178..12094711 | 237..770 | 100 | -> | Plus |
2L | 12094769..12095251 | 771..1253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 12093791..12093910 | 1..118 | 97 | -> | Plus |
arm_2L | 12093994..12094111 | 119..236 | 100 | -> | Plus |
arm_2L | 12094178..12094711 | 237..770 | 100 | -> | Plus |
arm_2L | 12094769..12095251 | 771..1253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12094178..12094711 | 237..770 | 100 | -> | Plus |
2L | 12094769..12095251 | 771..1253 | 100 | Plus | |
2L | 12093791..12093910 | 1..118 | 97 | -> | Plus |
2L | 12093994..12094111 | 119..236 | 100 | -> | Plus |
Translation from 2 to 587
> RH04488.hyp SQSLFFTISHPPRNQGKASRNCTMSEEKKNGDELNDLLDSALQDFDKSGA GDQKEPSASSDVATNAGPEGSEDPDAFFIEQAKVLADRMNTLFGGPDTPS GDIPPLPQDPDQIMAGFKKMAEAAALTLSGENSATDEDVSKYSDSISQAL KGLQEGSENLAAPASENDIASMFGSLNLEGVCILKMKYEFSLLNH*
Translation from 69 to 587
> RH04488.pep MSEEKKNGDELNDLLDSALQDFDKSGAGDQKEPSASSDVATNAGPEGSED PDAFFIEQAKVLADRMNTLFGGPDTPSGDIPPLPQDPDQIMAGFKKMAEA AALTLSGENSATDEDVSKYSDSISQALKGLQEGSENLAAPASENDIASMF GSLNLEGVCILKMKYEFSLLNH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21559-PA | 295 | GF21559-PA | 1..161 | 1..158 | 676 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23764-PA | 292 | GG23764-PA | 1..159 | 1..159 | 742 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11575-PA | 293 | GH11575-PA | 1..158 | 1..156 | 615 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pex19-PC | 292 | CG5325-PC | 1..157 | 1..157 | 794 | 100 | Plus |
Pex19-PA | 292 | CG5325-PA | 1..157 | 1..157 | 794 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17065-PA | 292 | GI17065-PA | 1..160 | 1..157 | 632 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16215-PA | 277 | GL16215-PA | 1..159 | 1..162 | 662 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18805-PA | 291 | GA18805-PA | 1..155 | 1..157 | 676 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26722-PA | 292 | GM26722-PA | 1..158 | 1..158 | 767 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23815-PA | 292 | GD23815-PA | 1..158 | 1..158 | 774 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17649-PA | 291 | GJ17649-PA | 1..160 | 1..158 | 626 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21085-PA | 291 | GK21085-PA | 1..158 | 1..157 | 638 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18569-PA | 291 | GE18569-PA | 1..157 | 1..158 | 735 | 94.3 | Plus |