Clone RH04488 Report

Search the DGRC for RH04488

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:44
Well:88
Vector:pFlc-1
Associated Gene/TranscriptCG5325-RB
Protein status:RH04488.pep: wuzgold
Preliminary Size:1208
Sequenced Size:1275

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5325 2003-01-01 Sim4 clustering to Release 3
CG5325 2003-02-13 Blastp of sequenced clone
CG5325 2008-04-29 Release 5.5 accounting
CG5325 2008-08-15 Release 5.9 accounting
CG5325 2008-12-18 5.12 accounting

Clone Sequence Records

RH04488.complete Sequence

1275 bp (1275 high quality bases) assembled on 2003-02-13

GenBank Submission: BT009961

> RH04488.complete
ACAGAGTCTTTATTTTTTACCATTTCCCACCCACCACGAAATCAAGGAAA
AGCATCCCGAAATTGCACAATGTCCGAAGAAAAGAAGAATGGCGATGAAT
TAAACGACTTGCTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCC
GGTGACCAAAAGGAGCCGTCCGCATCATCGGATGTGGCGACCAACGCTGG
ACCTGAGGGCTCCGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGG
TGCTGGCCGATCGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGT
GGCGATATTCCGCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGTTT
CAAAAAGATGGCCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGG
CCACCGACGAGGATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTC
AAGGGTCTGCAAGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAA
CGACATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCC
TGAAAATGAAATATGAATTCTCCTTGCTCAATCATTAAACAATCCCCGTT
TGACAGGCTGGCGAGGGTGATGGAAACATGTTCCTACCATTCATGGAGGG
CATGATGCAGAGCCTGCTCTCGGCGGAGATTCTGTTGCCCAGCATCCGGG
AGCTGCTGGAGAAGTACCCCAAGTACCTCGAGGAGAACGACGCCAAGCTC
TCCGCTGAGGACAAGGAAAGGTACCAGAAGCAGATGGAGCTGTACAAGGT
GATTGAGGGGCATTTACAGAGCGAGAAGACCGAGGATTCGGCCGCCGTGA
AGCGAGAGAAGTTCCGCGTCGTGCTGGACGACATGCGCAAACTGCAAGAC
TACGGCCAGCCGCCGCCAGAGATTCTGGCCGAGACGGGCGGCGACTTGCC
CTTCGGCGATCCCACTGCCGGCGTAGCAGCCGGCGGTCCCGGTCCCCAGT
GCCCAACCATGTAGTGGCTGACGGAGCACGATAGTCTCGTGGTGTGCCAA
TTGGTTAACTGTTGAGTGTTGCACATTTTTTAGGCTAAGGCAAATTTGTA
TTTTATTTTATCACCGACAAAACAATACGGCGGTCGCTAATGGTTATCAC
CTCTCTCTTCAATCAAGCTATTATTTTCGTATTAACTGTTGGTTTATTAA
GTAGTTCTATACCTAAATACAATGCCTCGAAATACACCTAGAGGAAGAAG
CGAAAAAACAAAAAAAAAAAAAAAA

RH04488.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5325-RB 1330 CG5325-RB 37..1285 5..1253 6245 100 Plus
CG5325-RA 1327 CG5325-RA 635..1282 606..1253 3240 100 Plus
CG5325.a 1360 CG5325.a 714..1360 606..1252 3235 100 Plus
CG5325-RA 1327 CG5325-RA 100..636 5..541 2685 100 Plus
CG5325.a 1360 CG5325.a 179..715 5..541 2685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12092837..12093378 232..773 2695 99.8 Plus
chr2L 23010047 chr2L 12093431..12093915 769..1253 2410 99.8 Plus
chr2L 23010047 chr2L 12092658..12092775 119..236 590 100 Plus
chr2L 23010047 chr2L 12092461..12092577 5..121 585 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:19:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12094173..12094714 232..773 2695 99.8 Plus
2L 23513712 2L 12094767..12095251 769..1253 2425 100 Plus
2L 23513712 2L 12093994..12094111 119..236 590 100 Plus
2L 23513712 2L 12093797..12093913 5..121 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12094173..12094714 232..773 2695 99.8 Plus
2L 23513712 2L 12094767..12095251 769..1253 2425 100 Plus
2L 23513712 2L 12093994..12094111 119..236 590 100 Plus
2L 23513712 2L 12093797..12093913 5..121 585 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:57:33 has no hits.

RH04488.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:58:28 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12092455..12092574 1..118 97 -> Plus
chr2L 12092658..12092775 119..236 100 -> Plus
chr2L 12092842..12093375 237..770 100 -> Plus
chr2L 12093433..12093915 771..1253 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:13 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 1..519 70..588 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:16 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 1..519 70..588 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:42:24 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 1..472 70..541 100 == Plus
Pex19-RA 473..879 608..1014 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:24 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 1..519 70..588 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:23:38 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 1..472 70..541 100 == Plus
Pex19-RA 473..879 608..1014 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:04:48 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 21..716 1..694 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:16 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 21..1274 1..1252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:24 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 30..563 1..532 99 == Plus
Pex19-RA 564..1217 600..1252 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:25 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG5325-RB 21..716 1..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:23:38 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
Pex19-RA 30..563 1..532 99 == Plus
Pex19-RA 564..1217 600..1252 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:28 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12093791..12093910 1..118 97 -> Plus
2L 12093994..12094111 119..236 100 -> Plus
2L 12094178..12094711 237..770 100 -> Plus
2L 12094769..12095251 771..1253 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:28 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12093791..12093910 1..118 97 -> Plus
2L 12093994..12094111 119..236 100 -> Plus
2L 12094178..12094711 237..770 100 -> Plus
2L 12094769..12095251 771..1253 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:28 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12093791..12093910 1..118 97 -> Plus
2L 12093994..12094111 119..236 100 -> Plus
2L 12094178..12094711 237..770 100 -> Plus
2L 12094769..12095251 771..1253 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:24 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12093791..12093910 1..118 97 -> Plus
arm_2L 12093994..12094111 119..236 100 -> Plus
arm_2L 12094178..12094711 237..770 100 -> Plus
arm_2L 12094769..12095251 771..1253 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:07 Download gff for RH04488.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12094178..12094711 237..770 100 -> Plus
2L 12094769..12095251 771..1253 100   Plus
2L 12093791..12093910 1..118 97 -> Plus
2L 12093994..12094111 119..236 100 -> Plus

RH04488.hyp Sequence

Translation from 2 to 587

> RH04488.hyp
SQSLFFTISHPPRNQGKASRNCTMSEEKKNGDELNDLLDSALQDFDKSGA
GDQKEPSASSDVATNAGPEGSEDPDAFFIEQAKVLADRMNTLFGGPDTPS
GDIPPLPQDPDQIMAGFKKMAEAAALTLSGENSATDEDVSKYSDSISQAL
KGLQEGSENLAAPASENDIASMFGSLNLEGVCILKMKYEFSLLNH*

RH04488.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pex19-PC 292 CG5325-PC 1..157 24..180 794 100 Plus
Pex19-PA 292 CG5325-PA 1..157 24..180 794 100 Plus

RH04488.pep Sequence

Translation from 69 to 587

> RH04488.pep
MSEEKKNGDELNDLLDSALQDFDKSGAGDQKEPSASSDVATNAGPEGSED
PDAFFIEQAKVLADRMNTLFGGPDTPSGDIPPLPQDPDQIMAGFKKMAEA
AALTLSGENSATDEDVSKYSDSISQALKGLQEGSENLAAPASENDIASMF
GSLNLEGVCILKMKYEFSLLNH*

RH04488.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21559-PA 295 GF21559-PA 1..161 1..158 676 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23764-PA 292 GG23764-PA 1..159 1..159 742 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11575-PA 293 GH11575-PA 1..158 1..156 615 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Pex19-PC 292 CG5325-PC 1..157 1..157 794 100 Plus
Pex19-PA 292 CG5325-PA 1..157 1..157 794 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17065-PA 292 GI17065-PA 1..160 1..157 632 81.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16215-PA 277 GL16215-PA 1..159 1..162 662 82.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18805-PA 291 GA18805-PA 1..155 1..157 676 86.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26722-PA 292 GM26722-PA 1..158 1..158 767 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23815-PA 292 GD23815-PA 1..158 1..158 774 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17649-PA 291 GJ17649-PA 1..160 1..158 626 78.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21085-PA 291 GK21085-PA 1..158 1..157 638 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18569-PA 291 GE18569-PA 1..157 1..158 735 94.3 Plus