Clone RH04535 Report

Search the DGRC for RH04535

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:45
Well:35
Vector:pFlc-1
Associated Gene/TranscriptCG11655-RA
Protein status:RH04535.pep: gold
Sequenced Size:1722

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11655 2001-12-13 Blastp of sequenced clone
CG11655 2002-01-01 Sim4 clustering to Release 2
CG11655 2003-01-01 Sim4 clustering to Release 3
CG11655 2008-04-29 Release 5.5 accounting
CG11655 2008-08-15 Release 5.9 accounting
CG11655 2008-12-18 5.12 accounting

Clone Sequence Records

RH04535.complete Sequence

1722 bp (1722 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070661

> RH04535.complete
GATTCCAGTTGGAGCACTTGTTGCGTGCGAAAACATTCCGGCTAACGGAT
AACGGCTAACGAATTACATCACCTGAGTGGCGGCGAAATAATGTCTCCGC
ACGGACGTCCTGGTTGGGAATGGAGCTACCTCCTGCTCACCCTGGCCGTG
GGATTCGCATCCACCCACGGGTGGATGGCCCACTTTCGCCCAGCTGCGCT
CACGTTGCAGATGGAGCGCGGGGATCGGGTGCAGCTCAAGCTGGAGAATG
TGGCACCTTCCACGCTGCAGCAGCCGACGCGTTACCACTTCCGCCTGGAA
AGTGTGGACACGGATTTGGCCAGTGTTCCAGGCGAGAATGCCACGATATC
CCTGGATGTATTCAACACGGACACACGCGACTGGACGGGTGACATCGTAG
TTAATGGCCATTTTCTGGGACAGACCAAGATCCAAGTGAAGCTGTACGAC
AGCCAGCGAAACACCAGTGAACTGCCCACCAATTGGAGCAACGACAGCAC
GCTGGACGTGAAGATCAAGCGACCGAAACGTGTGGTGGATGACATATTCC
TGGGTACGATCATACTACTAATGTCGCTGCTGTACATCAGCTTTGGAGCC
GCCCTAAATCTGGACGTGCTGAGGGGTCTGATCACCCGGCCAACCGGCCC
GTGCATCGGATTTGTGATGCAGGTGGTGGGCATGCCTCTGCTCAGCTACG
CCCTCGGCGTCTTCATCTTCCCCCAGGCGCCGGCCATGCAGCTGGGTCTC
TTCTTCACCGGCATCTCGCCCAGCGGTGGGGCATCGAACACCTGGTCTGC
CGTTCTCGGCGGTAATATACACCTCTCGGTGCTAATGACCACCGTTTCTA
ATGTTGCTGCCTTCGCCACCATACCGCTGTGGACCATAACACTTGGCCAG
CTGATCTTCGAGCGAGCGGGCATCAAGGTGCCTTACGGCAAAATCGCCTC
GTACAGCAGCAGCCTGGTCCTTCCGCTCCTGCTCGGGCTGCTCGTCCAGA
AGAGAATGCCTCAGGTCGCTAGGGTGCTGGTCCGCCTGCTCAAGCCCGTC
TCCGCCTTCATCATCCTGTTCATCATCGTGTTCGCGATCATCAACAACTT
TTACCTGTTCTATTTGTTCTCCTGGCAGATCGTCGTCGCTGGCATGGCTC
TGCCTGGTCTGGGCTACATCTTCGCCTTCCTGGCAGCCAAGCTGCTGCAC
CAAAATGCAGCCGACGCCCTGACCATCGCCATCGAGACGGGCATCCAGAA
CACGGGCATCGCCATCTTCCTGCTGACGACCACGCTGGAATCGCCGGAGG
CGGACATCACCACGGTGGTGCCCGTATCGGTGGCCGTGATGACGCCGCTG
CCCCTGCTGGGCATTTATCTGTACAACCGGTGCTGGGGCAACAAGCGAAT
TAGTGAGGCCAGCGCCACCGCCTCCGAAGCGGAGCGGATAGCTGGGGCGA
TACATTAGCATTACCATGGCTATATAGCATGGCTATAGCACATAGTTTCT
TTGTACATATTCGTTATTTTGATAACCTATACATCGTGCTAGCGCACGTA
GACAAGGCTGAGATAGATGCTGGTTAAATTTGGGACCAAGGAATGCCGCA
AATCTCAAGCGTATTATACTCCAGAATTTCACCTAACACCTAAGACGAAC
CCAAACTTATTGGGATAATTATTTTTTTTACAATAAAATTAACCTATTAA
TTTTGCAAAAAAAAAAAAAAAA

RH04535.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11655-RA 1846 CG11655-RA 138..1844 2..1708 8535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15343427..15344553 2..1128 5635 100 Plus
chrX 22417052 chrX 15344912..15345492 1126..1706 2890 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:19:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15453486..15454612 2..1128 5635 100 Plus
X 23542271 X 15454971..15455553 1126..1708 2915 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15461584..15462710 2..1128 5635 100 Plus
X 23527363 X 15463069..15463651 1126..1708 2915 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:20:42 has no hits.

RH04535.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:21:28 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15343426..15344553 1..1128 99 -> Plus
chrX 15344915..15345449 1129..1663 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:15 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 1..1368 91..1458 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:25 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 1..1368 91..1458 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:08:39 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 1..1368 91..1458 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:31 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 1..1368 91..1458 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:40:14 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 1..1368 91..1458 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:48:40 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 2..1706 2..1706 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:24 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 2..1706 2..1706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:39 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 15..1720 1..1706 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:31 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 2..1706 2..1706 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:14 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
CG11655-RA 15..1720 1..1706 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:21:28 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
X 15453485..15454612 1..1128 99 -> Plus
X 15454974..15455551 1129..1706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:21:28 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
X 15453485..15454612 1..1128 99 -> Plus
X 15454974..15455551 1129..1706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:21:28 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
X 15453485..15454612 1..1128 99 -> Plus
X 15454974..15455551 1129..1706 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:39 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15347518..15348645 1..1128 99 -> Plus
arm_X 15349007..15349584 1129..1706 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:35 Download gff for RH04535.complete
Subject Subject Range Query Range Percent Splice Strand
X 15461583..15462710 1..1128 99 -> Plus
X 15463072..15463649 1129..1706 100   Plus

RH04535.pep Sequence

Translation from 90 to 1457

> RH04535.pep
MSPHGRPGWEWSYLLLTLAVGFASTHGWMAHFRPAALTLQMERGDRVQLK
LENVAPSTLQQPTRYHFRLESVDTDLASVPGENATISLDVFNTDTRDWTG
DIVVNGHFLGQTKIQVKLYDSQRNTSELPTNWSNDSTLDVKIKRPKRVVD
DIFLGTIILLMSLLYISFGAALNLDVLRGLITRPTGPCIGFVMQVVGMPL
LSYALGVFIFPQAPAMQLGLFFTGISPSGGASNTWSAVLGGNIHLSVLMT
TVSNVAAFATIPLWTITLGQLIFERAGIKVPYGKIASYSSSLVLPLLLGL
LVQKRMPQVARVLVRLLKPVSAFIILFIIVFAIINNFYLFYLFSWQIVVA
GMALPGLGYIFAFLAAKLLHQNAADALTIAIETGIQNTGIAIFLLTTTLE
SPEADITTVVPVSVAVMTPLPLLGIYLYNRCWGNKRISEASATASEAERI
AGAIH*

RH04535.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21239-PA 439 GF21239-PA 4..438 15..450 1700 74.4 Plus
Dana\GF20799-PA 454 GF20799-PA 5..432 11..440 497 30.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17879-PA 455 GG17879-PA 1..455 1..455 2116 91.2 Plus
Dere\GG19318-PA 453 GG19318-PA 24..439 21..442 477 30.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24476-PA 444 GH24476-PA 23..443 26..450 1395 63.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11655-PA 455 CG11655-PA 1..455 1..455 2316 100 Plus
CG9903-PA 454 CG9903-PA 37..440 28..442 555 31.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15340-PA 443 GI15340-PA 24..442 28..450 1448 65.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14581-PA 423 GL14581-PA 2..422 27..450 1776 78.5 Plus
Dper\GL26933-PA 151 GL26933-PA 1..150 298..450 601 78.4 Plus
Dper\GL12905-PA 264 GL12905-PA 1..244 198..439 391 36.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11122-PA 444 GA11122-PA 4..443 7..450 1787 76.4 Plus
Dpse\GA22711-PA 451 GA22711-PA 30..431 28..439 530 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19565-PA 455 GM19565-PA 1..455 1..455 2329 97.6 Plus
Dsec\GM13393-PA 458 GM13393-PA 37..389 28..392 434 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17211-PA 455 GD17211-PA 1..455 1..455 2340 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16857-PA 442 GJ16857-PA 21..441 25..450 1485 67.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19860-PA 450 GK19860-PA 2..449 4..450 1416 67.9 Plus
Dwil\GK25246-PA 461 GK25246-PA 33..434 28..433 516 31.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17185-PA 453 GE17185-PA 1..453 1..455 2186 93.8 Plus
Dyak\GE15965-PA 453 GE15965-PA 24..439 21..442 458 30.8 Plus

RH04535.hyp Sequence

Translation from 90 to 1457

> RH04535.hyp
MSPHGRPGWEWSYLLLTLAVGFASTHGWMAHFRPAALTLQMERGDRVQLK
LENVAPSTLQQPTRYHFRLESVDTDLASVPGENATISLDVFNTDTRDWTG
DIVVNGHFLGQTKIQVKLYDSQRNTSELPTNWSNDSTLDVKIKRPKRVVD
DIFLGTIILLMSLLYISFGAALNLDVLRGLITRPTGPCIGFVMQVVGMPL
LSYALGVFIFPQAPAMQLGLFFTGISPSGGASNTWSAVLGGNIHLSVLMT
TVSNVAAFATIPLWTITLGQLIFERAGIKVPYGKIASYSSSLVLPLLLGL
LVQKRMPQVARVLVRLLKPVSAFIILFIIVFAIINNFYLFYLFSWQIVVA
GMALPGLGYIFAFLAAKLLHQNAADALTIAIETGIQNTGIAIFLLTTTLE
SPEADITTVVPVSVAVMTPLPLLGIYLYNRCWGNKRISEASATASEAERI
AGAIH*

RH04535.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11655-PA 455 CG11655-PA 1..455 1..455 2316 100 Plus
CG9903-PA 454 CG9903-PA 37..440 28..442 555 31.7 Plus