BDGP Sequence Production Resources |
Search the DGRC for RH04706
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 47 |
Well: | 6 |
Vector: | pFlc-1 |
Associated Gene/Transcript | GNBP2-RB |
Protein status: | RH04706.pep: gold |
Sequenced Size: | 1531 |
Gene | Date | Evidence |
---|---|---|
GNBP2-RA | 2009-06-22 | Replacement based on scoring |
1531 bp assembled on 2009-08-10
GenBank Submission: BT099533.1
> RH04706.complete GACAGTCCCACCGCAGAGCTTCTCAGATTAATACGCTAATCGGATTCTAG TTAGTACACATATTAAGAGTAATTAAAACTGCGTCATGAGGTGGGAATTT CTGCCATGTTTATTATTGCTCATTTCAAACAATAAAATCTTTGGTTTTAA AGTACCCAGTATTAATTTTGAAATGCTAAAGGATGAAGGATTCGAAGTGT CCATACCAGATGAGCCTGGCATACAGCGGGTGTTCTACATGTTCCAAATT GACGACACCTGCCCGGCTCTAATGGACTACATCACGGAGGCAGTGAACGG AAGTTGGGTCTCCAAGCAAAAGATGAGTCTGCAGAACAACGACAAGCTGC AGATATCAATGCTGGTGCAGTTCAATGAGGAAATCTTCGAAAAGAGTGAA ACCAGGGTGATCATAAACACCCGGCTACTGACCACCAAAGACTCTAGCTC GCGAGGCATAACATTCCTTACAGGAGAGGGCGAGTGCCAGGCATACCTAG CTCCTGCACAGCAAGCCAAACGCTGCAAGGCCGCCCAAACGATAGTGAGC AATGGACGCCATACTTGCCAGGGTGAACTGATCTTTGAGGACAACTTCTC GGAGGCGCAGCTGAACAAGACCACCTGGAAGCATGACATCCGACAGCGCA TGTACCACGTGGAGGAGGAGCTGGTGGCCTTCGACGATGCCGCACGCAAC TGCTTTGTGAAGGAAGGCGAACTCCATATCGTTCCCACTATCGCCACCGA GGTCACCGATGGCAGCTTCAAACTGGGAGATCGCTGTACGGCCGTCGAAA GTCCGGAACAGGAGTGCAACATTGCGCACGGCATCTTCTATAGCATCAAG CCTCCAGTTTTCTCCGCCCAAATTCACACCAGAAACTCTTTCAGTTTCAA ATTTGGCAAAATCGTCGTGCGCGCCAAGTTGCCCAAGGGGGATTGGCTTT TCCCCTATCTGATGCTCCAACCGGTTTCCACTTACGCGGAGACCCACTAT GCCAAGCAATTGAGAATTGCATATGCCCGTGGCAATGCCAATTTGAGGAC GAAACAAGGAGATGATATCTCCGGAAACCACTTATATGGCGGCGGTGTGG TTTGGCACCACGGCAATGCAGTACAGTTCCTCAAGGACAAGATAAGCAAC AGCCACTACGGGGACGACTTTCACAACTACACCATGATCTGGCAGAGGGA TAAGATTACCCTAATGGTAGACGATGAGGTTTATGGGGAGCTGTACGACG GACTGCCATTCTTCAACGAGAAGTGCTTTATTATCTTTGGCGTTACGGTG GGCGGCTTCCTGAACTTCGACGATAGTCTATTGGCCAAGGATGTCAAGCC TTATAAAAACAGGGAACCCCGGGCTGCCCTCTCATTTTGGCAGCACCGCG ATGCTTGGGCCCCCACTTGGGGCAGGCACAGCGCCATGGTCATAGACTAT GTTAGGGTTTATGCGGAGTAGCTGTGGCATTTGTCACCAAAATATAAATA AAGTACTTAAACACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GNBP2-RB | 1571 | GNBP2-RB | 1..1516 | 2..1517 | 7565 | 99.9 | Plus |
GNBP2-RA | 1447 | GNBP2-RA | 75..1441 | 151..1517 | 6820 | 99.9 | Plus |
GNBP2-RC | 1428 | GNBP2-RC | 56..804 | 208..956 | 3745 | 100 | Plus |
GNBP2-RC | 1428 | GNBP2-RC | 869..1425 | 957..1513 | 2785 | 100 | Plus |
GNBP2-RA | 1447 | GNBP2-RA | 1..76 | 15..90 | 380 | 100 | Plus |
GNBP2-RC | 1428 | GNBP2-RC | 1..57 | 34..90 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18663155..18663654 | 1513..1014 | 2500 | 100 | Minus |
chr3L | 24539361 | chr3L | 18664224..18664660 | 642..206 | 2170 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 18663848..18664162 | 956..642 | 1575 | 100 | Minus |
chr3L | 24539361 | chr3L | 18664894..18665105 | 213..2 | 1045 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 18663726..18663783 | 1014..957 | 275 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18673472..18673975 | 1517..1014 | 2505 | 99.8 | Minus |
3L | 28110227 | 3L | 18674545..18674981 | 642..206 | 2185 | 100 | Minus |
3L | 28110227 | 3L | 18674169..18674483 | 956..642 | 1575 | 100 | Minus |
3L | 28110227 | 3L | 18675215..18675426 | 213..2 | 1045 | 99.5 | Minus |
3L | 28110227 | 3L | 18674047..18674104 | 1014..957 | 290 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18666572..18667075 | 1517..1014 | 2505 | 99.8 | Minus |
3L | 28103327 | 3L | 18667645..18668081 | 642..206 | 2185 | 100 | Minus |
3L | 28103327 | 3L | 18667269..18667583 | 956..642 | 1575 | 100 | Minus |
3L | 28103327 | 3L | 18668315..18668526 | 213..2 | 1045 | 99.5 | Minus |
3L | 28103327 | 3L | 18667147..18667204 | 1014..957 | 290 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18663727..18663783 | 957..1013 | 98 | <- | Minus |
chr3L | 18663153..18663654 | 1014..1515 | 99 | <- | Minus |
chr3L | 18663848..18664161 | 643..956 | 100 | <- | Minus |
chr3L | 18664224..18664656 | 210..642 | 99 | <- | Minus |
chr3L | 18664898..18665105 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1386 | 86..1471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1386 | 86..1471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1386 | 86..1471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1386 | 86..1471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1514 | 2..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1514 | 2..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1514 | 2..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 1..1501 | 15..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18673474..18673975 | 1014..1515 | 99 | <- | Minus |
3L | 18674048..18674104 | 957..1013 | 100 | <- | Minus |
3L | 18674169..18674482 | 643..956 | 100 | <- | Minus |
3L | 18674545..18674977 | 210..642 | 100 | <- | Minus |
3L | 18675219..18675426 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18673474..18673975 | 1014..1515 | 99 | <- | Minus |
3L | 18674048..18674104 | 957..1013 | 100 | <- | Minus |
3L | 18674169..18674482 | 643..956 | 100 | <- | Minus |
3L | 18674545..18674977 | 210..642 | 100 | <- | Minus |
3L | 18675219..18675426 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18673474..18673975 | 1014..1515 | 99 | <- | Minus |
3L | 18674048..18674104 | 957..1013 | 100 | <- | Minus |
3L | 18674169..18674482 | 643..956 | 100 | <- | Minus |
3L | 18674545..18674977 | 210..642 | 100 | <- | Minus |
3L | 18675219..18675426 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18667645..18668077 | 210..642 | 100 | <- | Minus |
arm_3L | 18666574..18667075 | 1014..1515 | 99 | <- | Minus |
arm_3L | 18667148..18667204 | 957..1013 | 100 | <- | Minus |
arm_3L | 18667269..18667582 | 643..956 | 100 | <- | Minus |
arm_3L | 18668319..18668526 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18666574..18667075 | 1014..1515 | 99 | <- | Minus |
3L | 18667148..18667204 | 957..1013 | 100 | <- | Minus |
3L | 18667269..18667582 | 643..956 | 100 | <- | Minus |
3L | 18667645..18668077 | 210..642 | 100 | <- | Minus |
3L | 18668319..18668526 | 1..209 | 99 | Minus |
Translation from 85 to 1470
> RH04706.pep MRWEFLPCLLLLISNNKIFGFKVPSINFEMLKDEGFEVSIPDEPGIQRVF YMFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEI FEKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAA QTIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFD DAARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGI FYSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPYLMLQPVSTY AETHYAKQLRIAYARGNANLRTKQGDDISGNHLYGGGVVWHHGNAVQFLK DKISNSHYGDDFHNYTMIWQRDKITLMVDDEVYGELYDGLPFFNEKCFII FGVTVGGFLNFDDSLLAKDVKPYKNREPRAALSFWQHRDAWAPTWGRHSA MVIDYVRVYAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10811-PA | 466 | GF10811-PA | 9..466 | 5..461 | 1919 | 73.6 | Plus |
Dana\GF23634-PA | 492 | GF23634-PA | 8..491 | 9..460 | 563 | 31.5 | Plus |
Dana\GF24364-PA | 492 | GF24364-PA | 16..491 | 9..460 | 377 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15732-PA | 432 | GG15732-PA | 1..432 | 30..461 | 2250 | 94.4 | Plus |
Dere\GG13669-PA | 492 | GG13669-PA | 8..491 | 9..460 | 571 | 32.5 | Plus |
Dere\GG13671-PA | 427 | GG13671-PA | 8..421 | 45..460 | 461 | 29.9 | Plus |
Dere\GG14358-PA | 486 | GG14358-PA | 13..485 | 8..460 | 380 | 26.7 | Plus |
Dere\GG13670-PA | 389 | GG13670-PA | 10..383 | 74..460 | 331 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14367-PA | 432 | GH14367-PA | 1..432 | 30..461 | 1743 | 70.4 | Plus |
Dgri\GH14368-PA | 490 | GH14368-PA | 28..489 | 21..460 | 534 | 31 | Plus |
Dgri\GH15336-PA | 484 | GH15336-PA | 19..483 | 19..460 | 337 | 25.4 | Plus |
Dgri\GH17200-PA | 189 | GH17200-PA | 1..183 | 282..460 | 300 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GNBP2-PB | 461 | CG4144-PB | 1..461 | 1..461 | 2466 | 100 | Plus |
GNBP2-PA | 432 | CG4144-PA | 1..432 | 30..461 | 2310 | 100 | Plus |
GNBP2-PD | 410 | CG4144-PD | 1..410 | 52..461 | 2194 | 100 | Plus |
GNBP1-PA | 492 | CG6895-PA | 8..491 | 9..460 | 580 | 32.5 | Plus |
GNBP3-PA | 490 | CG5008-PA | 13..489 | 8..460 | 368 | 26.8 | Plus |
CG34254-PA | 105 | CG34254-PA | 2..99 | 359..460 | 153 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11311-PA | 451 | GI11311-PA | 1..451 | 23..461 | 1598 | 63 | Plus |
Dmoj\GI13965-PA | 495 | GI13965-PA | 13..494 | 9..460 | 540 | 30.1 | Plus |
Dmoj\GI12940-PA | 487 | GI12940-PA | 5..486 | 6..460 | 315 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22693-PA | 432 | GL22693-PA | 1..432 | 30..461 | 1983 | 81.2 | Plus |
Dper\GL22887-PA | 499 | GL22887-PA | 11..498 | 9..460 | 542 | 31.2 | Plus |
Dper\GL20727-PA | 449 | GL20727-PA | 10..448 | 3..460 | 358 | 25.6 | Plus |
Dper\GL22889-PA | 109 | GL22889-PA | 9..104 | 194..290 | 191 | 40.2 | Plus |
Dper\GL22888-PA | 129 | GL22888-PA | 9..106 | 286..388 | 156 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17986-PA | 432 | GA17986-PA | 1..432 | 30..461 | 1994 | 81.5 | Plus |
Dpse\GA19936-PA | 499 | GA19936-PA | 11..498 | 9..460 | 537 | 31.2 | Plus |
Dpse\GA23915-PA | 392 | GA23915-PA | 43..386 | 115..460 | 529 | 35.2 | Plus |
Dpse\GA18590-PA | 496 | GA18590-PA | 10..495 | 3..460 | 410 | 27.6 | Plus |
Dpse\GA23914-PA | 136 | GA23914-PA | 4..113 | 271..388 | 212 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14928-PA | 432 | GM14928-PA | 1..432 | 30..461 | 2317 | 98.1 | Plus |
Dsec\GM14984-PA | 492 | GM14984-PA | 8..491 | 9..460 | 590 | 32.7 | Plus |
Dsec\GM14986-PA | 625 | GM14986-PA | 320..619 | 162..460 | 428 | 33.3 | Plus |
Dsec\GM25102-PA | 490 | GM25102-PA | 13..489 | 8..460 | 372 | 26.5 | Plus |
Dsec\GM14986-PA | 625 | GM14986-PA | 20..317 | 21..335 | 186 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12334-PA | 432 | GD12334-PA | 1..432 | 30..461 | 2325 | 98.6 | Plus |
Dsim\GNBP1-PA | 492 | GD14761-PA | 8..491 | 9..460 | 585 | 32.7 | Plus |
Dsim\GD14763-PA | 332 | GD14763-PA | 2..326 | 144..460 | 438 | 33.3 | Plus |
Dsim\GD14138-PA | 490 | GD14138-PA | 13..489 | 8..460 | 376 | 26.3 | Plus |
Dsim\GD14762-PA | 376 | GD14762-PA | 52..376 | 49..385 | 280 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14103-PA | 432 | GJ14103-PA | 1..432 | 30..461 | 1771 | 72.5 | Plus |
Dvir\GJ11226-PA | 500 | GJ11226-PA | 25..499 | 18..460 | 514 | 31.2 | Plus |
Dvir\GJ13082-PA | 491 | GJ13082-PA | 22..490 | 20..460 | 332 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10581-PA | 432 | GK10581-PA | 1..432 | 30..461 | 1865 | 75.5 | Plus |
Dwil\GK12242-PA | 495 | GK12242-PA | 7..491 | 8..460 | 596 | 32.2 | Plus |
Dwil\GK16747-PA | 497 | GK16747-PA | 13..496 | 8..460 | 303 | 23.5 | Plus |
Dwil\GK10787-PA | 180 | GK10787-PA | 1..174 | 282..460 | 178 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22064-PA | 432 | GE22064-PA | 1..432 | 30..461 | 2252 | 95.1 | Plus |
Dyak\GNBP1-PA | 492 | GE19965-PA | 8..491 | 9..460 | 573 | 32.3 | Plus |
Dyak\GE19968-PA | 464 | GE19968-PA | 5..458 | 8..460 | 458 | 29.2 | Plus |
Dyak\GE20789-PA | 490 | GE20789-PA | 13..489 | 8..460 | 374 | 26.4 | Plus |
Dyak\GE19966-PA | 458 | GE19966-PA | 7..452 | 9..460 | 322 | 26.1 | Plus |
Translation from 85 to 1470
> RH04706.hyp MRWEFLPCLLLLISNNKIFGFKVPSINFEMLKDEGFEVSIPDEPGIQRVF YMFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEI FEKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAA QTIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFD DAARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGI FYSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPYLMLQPVSTY AETHYAKQLRIAYARGNANLRTKQGDDISGNHLYGGGVVWHHGNAVQFLK DKISNSHYGDDFHNYTMIWQRDKITLMVDDEVYGELYDGLPFFNEKCFII FGVTVGGFLNFDDSLLAKDVKPYKNREPRAALSFWQHRDAWAPTWGRHSA MVIDYVRVYAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GNBP2-PB | 461 | CG4144-PB | 1..461 | 1..461 | 2466 | 100 | Plus |
GNBP2-PA | 432 | CG4144-PA | 1..432 | 30..461 | 2310 | 100 | Plus |
GNBP2-PD | 410 | CG4144-PD | 1..410 | 52..461 | 2194 | 100 | Plus |
GNBP1-PA | 492 | CG6895-PA | 8..491 | 9..460 | 580 | 32.5 | Plus |
GNBP3-PA | 490 | CG5008-PA | 13..489 | 8..460 | 368 | 26.8 | Plus |