Clone RH04706 Report

Search the DGRC for RH04706

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:47
Well:6
Vector:pFlc-1
Associated Gene/TranscriptGNBP2-RB
Protein status:RH04706.pep: gold
Sequenced Size:1531

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
GNBP2-RA 2009-06-22 Replacement based on scoring

Clone Sequence Records

RH04706.complete Sequence

1531 bp assembled on 2009-08-10

GenBank Submission: BT099533.1

> RH04706.complete
GACAGTCCCACCGCAGAGCTTCTCAGATTAATACGCTAATCGGATTCTAG
TTAGTACACATATTAAGAGTAATTAAAACTGCGTCATGAGGTGGGAATTT
CTGCCATGTTTATTATTGCTCATTTCAAACAATAAAATCTTTGGTTTTAA
AGTACCCAGTATTAATTTTGAAATGCTAAAGGATGAAGGATTCGAAGTGT
CCATACCAGATGAGCCTGGCATACAGCGGGTGTTCTACATGTTCCAAATT
GACGACACCTGCCCGGCTCTAATGGACTACATCACGGAGGCAGTGAACGG
AAGTTGGGTCTCCAAGCAAAAGATGAGTCTGCAGAACAACGACAAGCTGC
AGATATCAATGCTGGTGCAGTTCAATGAGGAAATCTTCGAAAAGAGTGAA
ACCAGGGTGATCATAAACACCCGGCTACTGACCACCAAAGACTCTAGCTC
GCGAGGCATAACATTCCTTACAGGAGAGGGCGAGTGCCAGGCATACCTAG
CTCCTGCACAGCAAGCCAAACGCTGCAAGGCCGCCCAAACGATAGTGAGC
AATGGACGCCATACTTGCCAGGGTGAACTGATCTTTGAGGACAACTTCTC
GGAGGCGCAGCTGAACAAGACCACCTGGAAGCATGACATCCGACAGCGCA
TGTACCACGTGGAGGAGGAGCTGGTGGCCTTCGACGATGCCGCACGCAAC
TGCTTTGTGAAGGAAGGCGAACTCCATATCGTTCCCACTATCGCCACCGA
GGTCACCGATGGCAGCTTCAAACTGGGAGATCGCTGTACGGCCGTCGAAA
GTCCGGAACAGGAGTGCAACATTGCGCACGGCATCTTCTATAGCATCAAG
CCTCCAGTTTTCTCCGCCCAAATTCACACCAGAAACTCTTTCAGTTTCAA
ATTTGGCAAAATCGTCGTGCGCGCCAAGTTGCCCAAGGGGGATTGGCTTT
TCCCCTATCTGATGCTCCAACCGGTTTCCACTTACGCGGAGACCCACTAT
GCCAAGCAATTGAGAATTGCATATGCCCGTGGCAATGCCAATTTGAGGAC
GAAACAAGGAGATGATATCTCCGGAAACCACTTATATGGCGGCGGTGTGG
TTTGGCACCACGGCAATGCAGTACAGTTCCTCAAGGACAAGATAAGCAAC
AGCCACTACGGGGACGACTTTCACAACTACACCATGATCTGGCAGAGGGA
TAAGATTACCCTAATGGTAGACGATGAGGTTTATGGGGAGCTGTACGACG
GACTGCCATTCTTCAACGAGAAGTGCTTTATTATCTTTGGCGTTACGGTG
GGCGGCTTCCTGAACTTCGACGATAGTCTATTGGCCAAGGATGTCAAGCC
TTATAAAAACAGGGAACCCCGGGCTGCCCTCTCATTTTGGCAGCACCGCG
ATGCTTGGGCCCCCACTTGGGGCAGGCACAGCGCCATGGTCATAGACTAT
GTTAGGGTTTATGCGGAGTAGCTGTGGCATTTGTCACCAAAATATAAATA
AAGTACTTAAACACCAAAAAAAAAAAAAAAA

RH04706.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RB 1571 GNBP2-RB 1..1516 2..1517 7565 99.9 Plus
GNBP2-RA 1447 GNBP2-RA 75..1441 151..1517 6820 99.9 Plus
GNBP2-RC 1428 GNBP2-RC 56..804 208..956 3745 100 Plus
GNBP2-RC 1428 GNBP2-RC 869..1425 957..1513 2785 100 Plus
GNBP2-RA 1447 GNBP2-RA 1..76 15..90 380 100 Plus
GNBP2-RC 1428 GNBP2-RC 1..57 34..90 285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18663155..18663654 1513..1014 2500 100 Minus
chr3L 24539361 chr3L 18664224..18664660 642..206 2170 99.8 Minus
chr3L 24539361 chr3L 18663848..18664162 956..642 1575 100 Minus
chr3L 24539361 chr3L 18664894..18665105 213..2 1045 99.5 Minus
chr3L 24539361 chr3L 18663726..18663783 1014..957 275 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:19:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18673472..18673975 1517..1014 2505 99.8 Minus
3L 28110227 3L 18674545..18674981 642..206 2185 100 Minus
3L 28110227 3L 18674169..18674483 956..642 1575 100 Minus
3L 28110227 3L 18675215..18675426 213..2 1045 99.5 Minus
3L 28110227 3L 18674047..18674104 1014..957 290 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18666572..18667075 1517..1014 2505 99.8 Minus
3L 28103327 3L 18667645..18668081 642..206 2185 100 Minus
3L 28103327 3L 18667269..18667583 956..642 1575 100 Minus
3L 28103327 3L 18668315..18668526 213..2 1045 99.5 Minus
3L 28103327 3L 18667147..18667204 1014..957 290 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:17:09 has no hits.

RH04706.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:54 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18663727..18663783 957..1013 98 <- Minus
chr3L 18663153..18663654 1014..1515 99 <- Minus
chr3L 18663848..18664161 643..956 100 <- Minus
chr3L 18664224..18664656 210..642 99 <- Minus
chr3L 18664898..18665105 1..209 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:13:29 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1386 86..1471 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:57:30 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1386 86..1471 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:25:48 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1386 86..1471 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:37 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1386 86..1471 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-10 16:06:02 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1514 2..1515 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:57:30 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1514 2..1515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:25:48 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1514 2..1515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:37 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 1..1501 15..1515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:54 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18673474..18673975 1014..1515 99 <- Minus
3L 18674048..18674104 957..1013 100 <- Minus
3L 18674169..18674482 643..956 100 <- Minus
3L 18674545..18674977 210..642 100 <- Minus
3L 18675219..18675426 1..209 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:54 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18673474..18673975 1014..1515 99 <- Minus
3L 18674048..18674104 957..1013 100 <- Minus
3L 18674169..18674482 643..956 100 <- Minus
3L 18674545..18674977 210..642 100 <- Minus
3L 18675219..18675426 1..209 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:54 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18673474..18673975 1014..1515 99 <- Minus
3L 18674048..18674104 957..1013 100 <- Minus
3L 18674169..18674482 643..956 100 <- Minus
3L 18674545..18674977 210..642 100 <- Minus
3L 18675219..18675426 1..209 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:25:48 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18667645..18668077 210..642 100 <- Minus
arm_3L 18666574..18667075 1014..1515 99 <- Minus
arm_3L 18667148..18667204 957..1013 100 <- Minus
arm_3L 18667269..18667582 643..956 100 <- Minus
arm_3L 18668319..18668526 1..209 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:49:04 Download gff for RH04706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18666574..18667075 1014..1515 99 <- Minus
3L 18667148..18667204 957..1013 100 <- Minus
3L 18667269..18667582 643..956 100 <- Minus
3L 18667645..18668077 210..642 100 <- Minus
3L 18668319..18668526 1..209 99   Minus

RH04706.pep Sequence

Translation from 85 to 1470

> RH04706.pep
MRWEFLPCLLLLISNNKIFGFKVPSINFEMLKDEGFEVSIPDEPGIQRVF
YMFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEI
FEKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAA
QTIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFD
DAARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGI
FYSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPYLMLQPVSTY
AETHYAKQLRIAYARGNANLRTKQGDDISGNHLYGGGVVWHHGNAVQFLK
DKISNSHYGDDFHNYTMIWQRDKITLMVDDEVYGELYDGLPFFNEKCFII
FGVTVGGFLNFDDSLLAKDVKPYKNREPRAALSFWQHRDAWAPTWGRHSA
MVIDYVRVYAE*

RH04706.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10811-PA 466 GF10811-PA 9..466 5..461 1919 73.6 Plus
Dana\GF23634-PA 492 GF23634-PA 8..491 9..460 563 31.5 Plus
Dana\GF24364-PA 492 GF24364-PA 16..491 9..460 377 25.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15732-PA 432 GG15732-PA 1..432 30..461 2250 94.4 Plus
Dere\GG13669-PA 492 GG13669-PA 8..491 9..460 571 32.5 Plus
Dere\GG13671-PA 427 GG13671-PA 8..421 45..460 461 29.9 Plus
Dere\GG14358-PA 486 GG14358-PA 13..485 8..460 380 26.7 Plus
Dere\GG13670-PA 389 GG13670-PA 10..383 74..460 331 27 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14367-PA 432 GH14367-PA 1..432 30..461 1743 70.4 Plus
Dgri\GH14368-PA 490 GH14368-PA 28..489 21..460 534 31 Plus
Dgri\GH15336-PA 484 GH15336-PA 19..483 19..460 337 25.4 Plus
Dgri\GH17200-PA 189 GH17200-PA 1..183 282..460 300 38.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-PB 461 CG4144-PB 1..461 1..461 2466 100 Plus
GNBP2-PA 432 CG4144-PA 1..432 30..461 2310 100 Plus
GNBP2-PD 410 CG4144-PD 1..410 52..461 2194 100 Plus
GNBP1-PA 492 CG6895-PA 8..491 9..460 580 32.5 Plus
GNBP3-PA 490 CG5008-PA 13..489 8..460 368 26.8 Plus
CG34254-PA 105 CG34254-PA 2..99 359..460 153 33.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11311-PA 451 GI11311-PA 1..451 23..461 1598 63 Plus
Dmoj\GI13965-PA 495 GI13965-PA 13..494 9..460 540 30.1 Plus
Dmoj\GI12940-PA 487 GI12940-PA 5..486 6..460 315 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22693-PA 432 GL22693-PA 1..432 30..461 1983 81.2 Plus
Dper\GL22887-PA 499 GL22887-PA 11..498 9..460 542 31.2 Plus
Dper\GL20727-PA 449 GL20727-PA 10..448 3..460 358 25.6 Plus
Dper\GL22889-PA 109 GL22889-PA 9..104 194..290 191 40.2 Plus
Dper\GL22888-PA 129 GL22888-PA 9..106 286..388 156 33 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17986-PA 432 GA17986-PA 1..432 30..461 1994 81.5 Plus
Dpse\GA19936-PA 499 GA19936-PA 11..498 9..460 537 31.2 Plus
Dpse\GA23915-PA 392 GA23915-PA 43..386 115..460 529 35.2 Plus
Dpse\GA18590-PA 496 GA18590-PA 10..495 3..460 410 27.6 Plus
Dpse\GA23914-PA 136 GA23914-PA 4..113 271..388 212 38.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14928-PA 432 GM14928-PA 1..432 30..461 2317 98.1 Plus
Dsec\GM14984-PA 492 GM14984-PA 8..491 9..460 590 32.7 Plus
Dsec\GM14986-PA 625 GM14986-PA 320..619 162..460 428 33.3 Plus
Dsec\GM25102-PA 490 GM25102-PA 13..489 8..460 372 26.5 Plus
Dsec\GM14986-PA 625 GM14986-PA 20..317 21..335 186 23.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12334-PA 432 GD12334-PA 1..432 30..461 2325 98.6 Plus
Dsim\GNBP1-PA 492 GD14761-PA 8..491 9..460 585 32.7 Plus
Dsim\GD14763-PA 332 GD14763-PA 2..326 144..460 438 33.3 Plus
Dsim\GD14138-PA 490 GD14138-PA 13..489 8..460 376 26.3 Plus
Dsim\GD14762-PA 376 GD14762-PA 52..376 49..385 280 25.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14103-PA 432 GJ14103-PA 1..432 30..461 1771 72.5 Plus
Dvir\GJ11226-PA 500 GJ11226-PA 25..499 18..460 514 31.2 Plus
Dvir\GJ13082-PA 491 GJ13082-PA 22..490 20..460 332 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10581-PA 432 GK10581-PA 1..432 30..461 1865 75.5 Plus
Dwil\GK12242-PA 495 GK12242-PA 7..491 8..460 596 32.2 Plus
Dwil\GK16747-PA 497 GK16747-PA 13..496 8..460 303 23.5 Plus
Dwil\GK10787-PA 180 GK10787-PA 1..174 282..460 178 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22064-PA 432 GE22064-PA 1..432 30..461 2252 95.1 Plus
Dyak\GNBP1-PA 492 GE19965-PA 8..491 9..460 573 32.3 Plus
Dyak\GE19968-PA 464 GE19968-PA 5..458 8..460 458 29.2 Plus
Dyak\GE20789-PA 490 GE20789-PA 13..489 8..460 374 26.4 Plus
Dyak\GE19966-PA 458 GE19966-PA 7..452 9..460 322 26.1 Plus

RH04706.hyp Sequence

Translation from 85 to 1470

> RH04706.hyp
MRWEFLPCLLLLISNNKIFGFKVPSINFEMLKDEGFEVSIPDEPGIQRVF
YMFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEI
FEKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAA
QTIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFD
DAARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGI
FYSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPYLMLQPVSTY
AETHYAKQLRIAYARGNANLRTKQGDDISGNHLYGGGVVWHHGNAVQFLK
DKISNSHYGDDFHNYTMIWQRDKITLMVDDEVYGELYDGLPFFNEKCFII
FGVTVGGFLNFDDSLLAKDVKPYKNREPRAALSFWQHRDAWAPTWGRHSA
MVIDYVRVYAE*

RH04706.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-PB 461 CG4144-PB 1..461 1..461 2466 100 Plus
GNBP2-PA 432 CG4144-PA 1..432 30..461 2310 100 Plus
GNBP2-PD 410 CG4144-PD 1..410 52..461 2194 100 Plus
GNBP1-PA 492 CG6895-PA 8..491 9..460 580 32.5 Plus
GNBP3-PA 490 CG5008-PA 13..489 8..460 368 26.8 Plus