BDGP Sequence Production Resources |
Search the DGRC for RH04924
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 49 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | se-RA |
Protein status: | RH04924.pep: gold |
Preliminary Size: | 732 |
Sequenced Size: | 835 |
Gene | Date | Evidence |
---|---|---|
CG6781 | 2001-12-13 | Blastp of sequenced clone |
CG6781 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6781 | 2003-01-01 | Sim4 clustering to Release 3 |
se | 2008-04-29 | Release 5.5 accounting |
se | 2008-08-15 | Release 5.9 accounting |
se | 2008-12-18 | 5.12 accounting |
835 bp (835 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070667
> RH04924.complete GACTTGCATCTCTGGACCCGAGCACGCACATCATGAGTAACGGCAGGCAT TTGGCAAAAGGCTCACCCATGCCGGATGTTCCCGAAGATGGTATCCTTCG CCTGTACTCGATGCGCTTCTGCCCATTTGCCCAACGGGTGCATCTGGTCC TGGACGCCAAGCAGATCCCGTATCACAGCATCTACATTAATCTCACAGAC AAGCCGGAGTGGCTGCTGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCT AGAAATCGTGCGAGAACCTGGACCACCTGTGCTCACAGAGTCGCTACTGA TTTGTGAATATCTGGACGAGCAGTATCCATTGCGACCACTCTATCCACGT GATCCGCTGAAGAAAGTGCAGGACAAGTTACTAATCGAGCGATTTAGAGC GGTGTTAGGTGCCTTCTTCAAGGCATCCGATGGCGGTGATCTGGAGCCCT TCTGGAGCGGCCTGGACATCTACGAAAGGGAGCTGGCTCGACGTGGTACG GAATTCTTTGGTGGCGAGCAGACGGGCATTCTGGACTATATGATTTGGCC CTGGTGTGAGCGCCTCGAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATA ACTACGATCAGAGTCGCTTCCCCCAGCTGACCCTTTGGCTGGAACGCATG AAACGAGATCCGGCTGTGATGGCCTTCTACATGGAGGCCGAGGTTCAGGC GGAGTTCCTGCGTACACGGAGCCTGGGTCGACCCAATTACAATCTGCTGG TCAAGGATGCCTGATGCACTTGGTTTATTGAATTTTTCGCATGGAATGAA TAAAACATAAATGCAGTCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8512645..8513215 | 59..629 | 2780 | 99.1 | Plus |
chr3L | 24539361 | chr3L | 8513272..8513463 | 629..819 | 895 | 99 | Plus |
chr3L | 24539361 | chr3L | 8512533..8512592 | 2..61 | 300 | 100 | Plus |
chr3L | 24539361 | chr3L | 8511511..8511644 | 87..220 | 250 | 79.1 | Plus |
chr3L | 24539361 | chr3L | 8516540..8516650 | 212..102 | 195 | 78.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 8520672..8521242 | 59..629 | 2855 | 100 | Plus |
3L | 28110227 | 3L | 8521299..8521490 | 629..820 | 960 | 100 | Plus |
3L | 28110227 | 3L | 8520559..8520618 | 2..61 | 300 | 100 | Plus |
3L | 28110227 | 3L | 8519538..8519671 | 87..220 | 250 | 79.1 | Plus |
3L | 28110227 | 3L | 8524566..8524676 | 212..102 | 195 | 78.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 8513772..8514342 | 59..629 | 2855 | 100 | Plus |
3L | 28103327 | 3L | 8514399..8514590 | 629..820 | 960 | 100 | Plus |
3L | 28103327 | 3L | 8513659..8513718 | 2..61 | 300 | 100 | Plus |
3L | 28103327 | 3L | 8512638..8512771 | 87..220 | 250 | 79.1 | Plus |
3L | 28103327 | 3L | 8517666..8517776 | 212..102 | 195 | 78.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8512532..8512591 | 1..60 | 98 | -> | Plus |
chr3L | 8512647..8513215 | 61..629 | 99 | -> | Plus |
chr3L | 8513273..8513463 | 630..819 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 1..732 | 33..764 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 1..732 | 33..764 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 1..732 | 33..764 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 1..732 | 33..764 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 1..732 | 33..764 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 7..825 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 7..825 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 7..825 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 7..825 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
se-RA | 7..825 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8520558..8520617 | 1..60 | 98 | -> | Plus |
3L | 8520674..8521242 | 61..629 | 100 | -> | Plus |
3L | 8521300..8521489 | 630..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8520558..8520617 | 1..60 | 98 | -> | Plus |
3L | 8520674..8521242 | 61..629 | 100 | -> | Plus |
3L | 8521300..8521489 | 630..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8520558..8520617 | 1..60 | 98 | -> | Plus |
3L | 8520674..8521242 | 61..629 | 100 | -> | Plus |
3L | 8521300..8521489 | 630..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8513658..8513717 | 1..60 | 98 | -> | Plus |
arm_3L | 8513774..8514342 | 61..629 | 100 | -> | Plus |
arm_3L | 8514400..8514589 | 630..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8513774..8514342 | 61..629 | 100 | -> | Plus |
3L | 8514400..8514589 | 630..819 | 100 | Plus | |
3L | 8513658..8513717 | 1..60 | 98 | -> | Plus |
Translation from 2 to 763
> RH04924.hyp LASLDPSTHIMSNGRHLAKGSPMPDVPEDGILRLYSMRFCPFAQRVHLVL DAKQIPYHSIYINLTDKPEWLLEKNPQGKVPALEIVREPGPPVLTESLLI CEYLDEQYPLRPLYPRDPLKKVQDKLLIERFRAVLGAFFKASDGGDLEPF WSGLDIYERELARRGTEFFGGEQTGILDYMIWPWCERLELLKLQRGEDYN YDQSRFPQLTLWLERMKRDPAVMAFYMEAEVQAEFLRTRSLGRPNYNLLV KDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
se-PA | 243 | CG6781-PA | 1..243 | 11..253 | 1300 | 100 | Plus |
GstO3-PA | 241 | CG6776-PA | 1..240 | 11..249 | 775 | 57.1 | Plus |
GstO1-PA | 254 | CG6662-PA | 1..248 | 11..253 | 692 | 52.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..245 | 15..248 | 620 | 46.7 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..248 | 15..251 | 575 | 43.6 | Plus |
Translation from 32 to 763
> RH04924.pep MSNGRHLAKGSPMPDVPEDGILRLYSMRFCPFAQRVHLVLDAKQIPYHSI YINLTDKPEWLLEKNPQGKVPALEIVREPGPPVLTESLLICEYLDEQYPL RPLYPRDPLKKVQDKLLIERFRAVLGAFFKASDGGDLEPFWSGLDIYERE LARRGTEFFGGEQTGILDYMIWPWCERLELLKLQRGEDYNYDQSRFPQLT LWLERMKRDPAVMAFYMEAEVQAEFLRTRSLGRPNYNLLVKDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24331-PA | 243 | GF24331-PA | 1..243 | 1..243 | 1194 | 91.4 | Plus |
Dana\GF24330-PA | 243 | GF24330-PA | 1..241 | 1..240 | 724 | 54.4 | Plus |
Dana\GF10159-PA | 252 | GF10159-PA | 1..246 | 1..243 | 702 | 55.2 | Plus |
Dana\GF10160-PA | 250 | GF10160-PA | 7..245 | 6..238 | 622 | 46.9 | Plus |
Dana\GF10161-PA | 223 | GF10161-PA | 1..221 | 27..242 | 498 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14321-PA | 243 | GG14321-PA | 1..243 | 1..243 | 1237 | 95.9 | Plus |
Dere\GG14320-PA | 241 | GG14320-PA | 1..241 | 1..240 | 754 | 55.6 | Plus |
Dere\GG15073-PA | 254 | GG15073-PA | 1..248 | 1..243 | 684 | 51.6 | Plus |
Dere\GG15074-PA | 250 | GG15074-PA | 6..245 | 5..238 | 613 | 46.2 | Plus |
Dere\GG15075-PA | 248 | GG15075-PA | 5..245 | 7..241 | 580 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15265-PA | 243 | GH15265-PA | 1..243 | 1..243 | 1195 | 91.8 | Plus |
Dgri\GH15264-PA | 241 | GH15264-PA | 1..241 | 1..240 | 725 | 54.4 | Plus |
Dgri\GH16193-PA | 249 | GH16193-PA | 6..244 | 5..238 | 620 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
se-PA | 243 | CG6781-PA | 1..243 | 1..243 | 1300 | 100 | Plus |
GstO3-PA | 241 | CG6776-PA | 1..240 | 1..239 | 775 | 57.1 | Plus |
GstO1-PA | 254 | CG6662-PA | 1..248 | 1..243 | 692 | 52.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..245 | 5..238 | 620 | 46.7 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..248 | 5..241 | 575 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11974-PA | 243 | GI11974-PA | 1..243 | 1..243 | 1179 | 91.4 | Plus |
Dmoj\GI11973-PA | 241 | GI11973-PA | 1..241 | 1..240 | 683 | 51.5 | Plus |
Dmoj\GI13342-PA | 251 | GI13342-PA | 1..243 | 1..238 | 638 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15504-PA | 243 | GL15504-PA | 1..243 | 1..243 | 1165 | 88.1 | Plus |
Dper\GL15503-PA | 241 | GL15503-PA | 1..241 | 1..240 | 694 | 53.1 | Plus |
Dper\GL15565-PA | 253 | GL15565-PA | 1..247 | 1..243 | 671 | 51.4 | Plus |
Dper\GL15566-PA | 250 | GL15566-PA | 6..245 | 5..238 | 633 | 49.2 | Plus |
Dper\GL15567-PA | 246 | GL15567-PA | 5..245 | 7..241 | 617 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19859-PA | 243 | GA19859-PA | 1..243 | 1..243 | 1161 | 87.7 | Plus |
Dpse\GA23844-PA | 241 | GA23844-PA | 1..241 | 1..240 | 687 | 52.7 | Plus |
Dpse\GA19760-PA | 243 | GA19760-PA | 1..243 | 1..239 | 665 | 51.4 | Plus |
Dpse\GA19769-PA | 250 | GA19769-PA | 6..245 | 5..238 | 637 | 49.6 | Plus |
Dpse\GA23449-PA | 246 | GA23449-PA | 5..245 | 7..241 | 614 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25062-PA | 204 | GM25062-PA | 1..204 | 1..243 | 992 | 82.7 | Plus |
Dsec\GM25061-PA | 241 | GM25061-PA | 1..241 | 1..240 | 752 | 55.2 | Plus |
Dsec\GM24930-PA | 254 | GM24930-PA | 1..248 | 1..243 | 704 | 53.2 | Plus |
Dsec\GM24931-PA | 250 | GM24931-PA | 6..245 | 5..238 | 614 | 46.7 | Plus |
Dsec\GM24932-PA | 224 | GM24932-PA | 1..221 | 27..241 | 513 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14100-PA | 243 | GD14100-PA | 1..243 | 1..243 | 1262 | 98.4 | Plus |
Dsim\GD14099-PA | 241 | GD14099-PA | 1..241 | 1..240 | 725 | 53.9 | Plus |
Dsim\GD12978-PA | 254 | GD12978-PA | 1..248 | 1..243 | 702 | 53.2 | Plus |
Dsim\GD12979-PA | 250 | GD12979-PA | 6..245 | 5..238 | 611 | 46.7 | Plus |
Dsim\GD12980-PA | 212 | GD12980-PA | 1..209 | 39..241 | 462 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12199-PA | 243 | GJ12199-PA | 1..243 | 1..243 | 1172 | 90.5 | Plus |
Dvir\GJ12198-PA | 241 | GJ12198-PA | 1..241 | 1..240 | 724 | 54.8 | Plus |
Dvir\GJ13170-PA | 249 | GJ13170-PA | 6..244 | 5..238 | 644 | 49 | Plus |
Dvir\GJ13171-PA | 222 | GJ13171-PA | 1..222 | 27..242 | 576 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20355-PA | 243 | GK20355-PA | 1..243 | 1..243 | 1168 | 90.5 | Plus |
Dwil\GK20538-PA | 259 | GK20538-PA | 1..253 | 1..243 | 684 | 52.4 | Plus |
Dwil\GK20354-PA | 238 | GK20354-PA | 9..233 | 6..229 | 639 | 52 | Plus |
Dwil\GK20539-PA | 251 | GK20539-PA | 7..246 | 5..238 | 611 | 47.9 | Plus |
Dwil\GK20540-PA | 239 | GK20540-PA | 1..235 | 10..238 | 585 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20749-PA | 243 | GE20749-PA | 1..243 | 1..243 | 1241 | 95.9 | Plus |
Dyak\GE20748-PA | 241 | GE20748-PA | 1..241 | 1..240 | 766 | 56.8 | Plus |
Dyak\GE21296-PA | 254 | GE21296-PA | 1..248 | 1..243 | 675 | 52.4 | Plus |
Dyak\GE21297-PA | 250 | GE21297-PA | 6..245 | 5..238 | 617 | 47.1 | Plus |
Dyak\GE21298-PA | 224 | GE21298-PA | 1..221 | 27..241 | 519 | 43.9 | Plus |