Clone RH05648 Report

Search the DGRC for RH05648

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:56
Well:48
Vector:pFlc-1
Associated Gene/TranscriptCG6415-RA
Protein status:RH05648.pep: gold
Sequenced Size:1263

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6415 2003-01-01 Sim4 clustering to Release 3
CG6415 2008-04-29 Release 5.5 accounting
CG6415 2008-08-15 Release 5.9 accounting
CG6415 2008-12-18 5.12 accounting

Clone Sequence Records

RH05648.complete Sequence

1263 bp (1263 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021235

> RH05648.complete
GAGTCACTGCGCGATGTTCAGACTAAGCTATCGACTGCCCGCTGCCCTCG
GCGGTCTGCGCCACGCCTCCTCCGCCGCCGGCGAGGGTCAGCGCACCGCC
CTCTACGATTTCCACGTGCAGAAAGGCGGAAAGATCGTGAACTTCGGAGG
CTATGCTCTGCCGGTTCAGTATTCGGATCAGAGCATTATAGCCTCCCACC
TGCACACCCGTCAGGTGGGCTCCATTTTCGACGTGTCGCACATGCTGCAA
TCCCGGATTTTCGGCAAGGATGCGGCCGCCTGTCTGGAGTCGGTTTGCAC
TGCGGACATTCTGGGCACGCCGGAGGGCAGTGGTAGCCTCACCGTCTTCA
CCAACGAGGCGGGCGGTATCCTGGACGATCTCATCGTGAACAAAGTCAGC
GAAAAGGAGCTATATGTGGTCTCCAATGCGGCGATGAAAGAACAGGACAT
GGGCATAATGAAGACAGCTGTGGATAATTTTAAGTCCCAGGGAAAAGACG
TATCCATTGAATTCCTCACACCCGCCGATCAATCTCTAGTAGCCGTCCAG
GGTCCTCAAGTGGCCAAGGAACTATCGAAACTACTTACCGGGAAAGCTTC
TCTCGATCAACTCTACTTCATGAGTTCCTTCGTCACCACATTGGCTGGAA
TCCCCAATGTCAGGATCACGAGATGTGGTTACACCGGTGAGGACGGTGTG
GAGATATCGGTGGCATCCAGCCAGGCACAGAAGCTCACTGAATCTCTTCT
TGAGAGTGGAGTCCTCAAGCTTGCTGGTCTGGGAGCCAGAGACTCCCTGC
GATTGGAGGCGGGTCTCTGCTTGTATGGCAGTGATATCGATTCTAAGACG
ACACCCGTGGAGGCGGCTCTTGCCTGGTTGGTAACCAAAAGACGCCGCAC
AACCCGCGATTTTCCAGGAGCTGACGTGATCCTTGGCCAGCTGAAGGAGG
GCGTCAGCCGGAGGCGAGTGGGTCTCCAGATGTTGGGCACCAAGCCACCG
CCAGCTCGTTCCGGAGTGGCCATCTTTAGTCAGGGTCAGCAGGTGGGTCA
GGTGACTAGTGGCTGCCCAAGTCCCAGTGCTGGACGCAACATTGCTATGG
GATATGTGGCAGAGAATCTAAAAGCACCCGGCACAAAGGTGGAGTTCAAG
GTTCGAGACAAGCTCTACGAGGCTGAAGTCACTAAAATGCCATTTGTAAA
AGCTAACTATTATAACAGACCAAAGAAATAAATGTGCAGCACACACTGAA
AAAAAAAAAAAAA

RH05648.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6415-RA 1397 CG6415-RA 40..1287 2..1249 6240 100 Plus
CG6415.a 1532 CG6415.a 275..1522 2..1249 6240 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10702893..10703669 472..1248 3885 100 Plus
chr2L 23010047 chr2L 10702367..10702838 2..473 2345 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:19:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10704148..10704925 472..1249 3890 100 Plus
2L 23513712 2L 10703622..10704093 2..473 2360 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10704148..10704925 472..1249 3890 100 Plus
2L 23513712 2L 10703622..10704093 2..473 2360 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:16:38 has no hits.

RH05648.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:17:34 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10702366..10702837 1..472 99 -> Plus
chr2L 10702894..10703669 473..1248 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:33 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 1..1218 14..1231 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:21:42 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 1..1218 14..1231 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:15 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 1..1218 14..1231 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:05:43 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 1..1218 14..1231 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:04 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 1..1218 14..1231 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:22:44 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 2..1248 2..1248 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:21:42 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 2..1248 2..1248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:15 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 2..1248 2..1248 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:05:43 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 2..1248 2..1248 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:04 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG6415-RA 2..1248 2..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:34 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10703621..10704092 1..472 99 -> Plus
2L 10704149..10704924 473..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:34 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10703621..10704092 1..472 99 -> Plus
2L 10704149..10704924 473..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:34 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10703621..10704092 1..472 99 -> Plus
2L 10704149..10704924 473..1248 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:15 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10703621..10704092 1..472 99 -> Plus
arm_2L 10704149..10704924 473..1248 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:02 Download gff for RH05648.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10703621..10704092 1..472 99 -> Plus
2L 10704149..10704924 473..1248 100   Plus

RH05648.hyp Sequence

Translation from 0 to 1230

> RH05648.hyp
SHCAMFRLSYRLPAALGGLRHASSAAGEGQRTALYDFHVQKGGKIVNFGG
YALPVQYSDQSIIASHLHTRQVGSIFDVSHMLQSRIFGKDAAACLESVCT
ADILGTPEGSGSLTVFTNEAGGILDDLIVNKVSEKELYVVSNAAMKEQDM
GIMKTAVDNFKSQGKDVSIEFLTPADQSLVAVQGPQVAKELSKLLTGKAS
LDQLYFMSSFVTTLAGIPNVRITRCGYTGEDGVEISVASSQAQKLTESLL
ESGVLKLAGLGARDSLRLEAGLCLYGSDIDSKTTPVEAALAWLVTKRRRT
TRDFPGADVILGQLKEGVSRRRVGLQMLGTKPPPARSGVAIFSQGQQVGQ
VTSGCPSPSAGRNIAMGYVAENLKAPGTKVEFKVRDKLYEAEVTKMPFVK
ANYYNRPKK*

RH05648.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6415-PA 405 CG6415-PA 1..405 5..409 2041 100 Plus
Sardh-PA 894 CG6385-PA 532..839 67..370 189 24.8 Plus
CG3626-PA 939 CG3626-PA 571..897 88..409 156 24 Plus

RH05648.pep Sequence

Translation from 1 to 1230

> RH05648.pep
SHCAMFRLSYRLPAALGGLRHASSAAGEGQRTALYDFHVQKGGKIVNFGG
YALPVQYSDQSIIASHLHTRQVGSIFDVSHMLQSRIFGKDAAACLESVCT
ADILGTPEGSGSLTVFTNEAGGILDDLIVNKVSEKELYVVSNAAMKEQDM
GIMKTAVDNFKSQGKDVSIEFLTPADQSLVAVQGPQVAKELSKLLTGKAS
LDQLYFMSSFVTTLAGIPNVRITRCGYTGEDGVEISVASSQAQKLTESLL
ESGVLKLAGLGARDSLRLEAGLCLYGSDIDSKTTPVEAALAWLVTKRRRT
TRDFPGADVILGQLKEGVSRRRVGLQMLGTKPPPARSGVAIFSQGQQVGQ
VTSGCPSPSAGRNIAMGYVAENLKAPGTKVEFKVRDKLYEAEVTKMPFVK
ANYYNRPKK*

RH05648.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15818-PA 405 GF15818-PA 1..405 5..409 1889 86.2 Plus
Dana\GF19457-PA 934 GF19457-PA 568..894 88..409 161 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23666-PA 405 GG23666-PA 1..405 5..409 2036 93.8 Plus
Dere\GG18704-PA 938 GG18704-PA 570..896 88..409 167 23.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10422-PA 415 GH10422-PA 2..415 5..409 1622 76.1 Plus
Dgri\GH12074-PA 932 GH12074-PA 573..899 88..409 166 23.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6415-PA 405 CG6415-PA 1..405 5..409 2041 100 Plus
Sardh-PA 894 CG6385-PA 532..839 67..370 189 24.8 Plus
CG3626-PA 939 CG3626-PA 571..897 88..409 156 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23443-PA 410 GI23443-PA 1..410 5..409 1665 77.9 Plus
Dmoj\GI21784-PA 935 GI21784-PA 576..902 88..409 163 23.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26626-PA 410 GL26626-PA 1..409 5..408 1796 82.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19575-PA 410 GA19575-PA 1..409 5..408 1786 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18702-PA 405 GM18702-PA 1..405 5..409 2091 96.8 Plus
Dsec\GM12342-PA 905 GM12342-PA 570..804 88..325 164 23.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23726-PA 405 GD23726-PA 1..405 5..409 2076 96.5 Plus
Dsim\GD25443-PA 894 GD25443-PA 532..839 67..370 181 24.8 Plus
Dsim\GD16688-PA 938 GD16688-PA 570..896 88..409 166 23.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23941-PA 414 GJ23941-PA 1..414 5..409 1681 77.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14613-PA 409 GK14613-PA 1..409 5..408 1589 71.9 Plus
Dwil\GK15723-PA 969 GK15723-PA 587..913 88..409 164 23.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18481-PA 405 GE18481-PA 1..405 5..409 2055 94.6 Plus
Dyak\GE16342-PA 938 GE16342-PA 570..896 88..409 167 23.4 Plus