Clone RH05737 Report

Search the DGRC for RH05737

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:57
Well:37
Vector:pFlc-1
Associated Gene/TranscriptCG12207-RA
Protein status:RH05737.pep: gold
Preliminary Size:1353
Sequenced Size:2163

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12207 2003-02-13 Blastp of sequenced clone
CG12207 2008-04-29 Release 5.5 accounting
CG12207 2008-08-15 Release 5.9 accounting
CG12207 2008-12-18 5.12 accounting

Clone Sequence Records

RH05737.complete Sequence

2163 bp (2163 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003753

> RH05737.complete
GATCTGGTAACATTGCAGCACGTAGTAAACAGAAAATCACAATTGGATCG
AAAAATCGCAAATTGCCATAAAACAGAGCACTCGCGTGTGCAAATATTAG
CGCAATTCGTTGGCAGGCTGAGCAGTGGGCGGTAGAGACGCCAACCCACC
CGCTCCCACTCTCTCCGTCGCGCCGTTTCGCTCGCTCTGTTTTGAAAGGC
CTGCCATGGGTGTGTGCGTGCGTGTGTGAGTTTGGGGCTCTGCGGCGGAG
TAACTGTAACAGTTGCAGCTGCAGTTGCAGTTACCGTTGCAAAGGAGCGG
CGTTCGGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGT
TCAACGAGAAGCAATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTAC
GGGAGCACCTGCTGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCA
CATCGTCGAGAAGACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCT
GCACGACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGC
CTGTTCCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTA
CTATCCCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGG
CCACGCCACCGGGCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAAC
AATGCCAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGA
CATCAGCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCA
ACACAAGTGGCACCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAAC
CAACAGCAGCAGCAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGG
GGAGCTGCTGGTGGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACG
GCCACGGTGGTTGCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCC
GCAATGACGCCCGAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAA
CAAGATAGACAACACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTA
AGGACCTGGTCAGCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACC
GCCGACGTTTTCCCGCAGCGCCGCCATCCGCTGAACAACTCCTACAAGAC
CAACAACAACGACCGTCCGTCACAGTATCAGCGCCACAGCTCGACGGGCA
GCGGGAACTCCTCGGATACGGCGCACCTGCTGAACACGACGCAGACGCGA
CGAGTCCAGAATTCGCTGAAGCGGCTGGAGAAGCAGCAGGACGACTTCTT
TGAGTTGTAGCGTCCGTCTGCGGGACGCAATCTAGCCTAATTACGCAGAG
AGTTAATTTTACAATTCGTTTTTAATTGCCGCGCATTGGGGAGATGACTT
TGGTCAGCATGTTACATCACACGGAAATGCCGCACTCTAAATGTAATATA
AATAATGATATCTATCGACAAATATGCGCGATACCTTACCTATACGATAA
AACATTAATGTAACTGAGCTAAAACCTAAACTAAACTATATACCTAAACT
AAGCGCTGCGCTATGTAAACCTGTAGTACGATGACAAGGCAGTTCTGTAA
ACCCATTTTGATCTTGTGTCAGCCCTGTATAATTGCCGCCAATTTGCTTG
CAAGATCCGATCTGAACCGCATCGAACAGATACGGAAGCCTTCTGTCCTC
CTGTCCGCCATCCTGCCCCCCATTATGTTTACTTTTTGTATGACTCTAGC
TTTAATCACACTGTGTATAATTTAGTTATGAGAATTATTAATGTTAATTG
TATATAGTCGCCAGAAAACACAACAATCCAACTGGACTGCTCTGACCGCT
AAAACACGAAATTGGCCAACTGTTGACGTGTAATTTTAATTTATTTTTTA
GCTTTCCAAAGTATTAAACCCGAAACGTTCTATATAAAACCGTAACCTCA
ATTGTTAAACAAGCATCCACCACAAAACAATATATACACCAATATATATT
ATGTATATCCCAGAAACCTCAATATCGAACTGCACTCATATCGAGCCAAG
TCATGTTGTACGTGAGAATGTTTTTTAAAATAAAGTGAGAATTGTGTTGG
AACAAAAAAAAAA

RH05737.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RA 2241 CG12207-RA 38..2192 2..2156 10745 99.9 Plus
CG12207-RB 2379 CG12207-RB 481..2330 307..2156 9220 99.8 Plus
CG12207.b 2003 CG12207.b 160..2003 307..2150 9190 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10126053..10127101 1105..2153 5215 99.8 Plus
chr3R 27901430 chr3R 10125244..10125843 505..1104 2970 99.7 Plus
chr3R 27901430 chr3R 10123068..10123373 2..307 1455 98.4 Plus
chr3R 27901430 chr3R 10123615..10123813 307..505 980 99.5 Plus
chrX 22417052 chrX 22124796..22124917 243..122 370 86.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:19:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14301228..14302279 1105..2156 5230 99.8 Plus
3R 32079331 3R 14300419..14301018 505..1104 3000 100 Plus
3R 32079331 3R 14298242..14298547 2..307 1530 100 Plus
3R 32079331 3R 14298789..14298987 307..505 995 100 Plus
X 23542271 X 22728790..22728911 243..122 385 87.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14042059..14043110 1105..2156 5230 99.8 Plus
3R 31820162 3R 14041250..14041849 505..1104 3000 100 Plus
3R 31820162 3R 14039073..14039378 2..307 1530 100 Plus
3R 31820162 3R 14039620..14039818 307..505 995 100 Plus
X 23527363 X 22713882..22714003 243..122 385 87.7 Minus
X 23527363 X 22712982..22713025 280..237 175 93.1 Minus
X 23527363 X 22714015..22714056 127..86 165 92.8 Minus
Blast to na_te.dros performed 2019-03-16 07:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 716..881 319 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6694..6925 650..874 306 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 718..881 275 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2526 682..881 259 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2478 723..884 228 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6863 743..872 220 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 696..863 220 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 738..893 216 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1157 785..884 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 766..881 161 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 731..881 149 58.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 715..881 146 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 682..884 138 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 786..881 130 64.6 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 1605..1647 1853..1811 125 76.7 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9487..9529 1853..1811 125 76.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 841..881 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 841..881 120 79.1 Plus
roo 9092 roo DM_ROO 9092bp 1062..1169 767..884 117 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2842 795..888 115 59.4 Plus

RH05737.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:00:40 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10123067..10123373 1..307 98 -> Plus
chr3R 10123616..10123813 308..505 99 -> Plus
chr3R 10125245..10125481 506..742 99 == Plus
chr3R 10125543..10125843 804..1104 99 -> Plus
chr3R 10126053..10127101 1105..2153 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:36 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 39..1101 300..1360 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:41 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 39..1101 300..1360 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:42:47 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 39..1101 300..1360 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:48 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 39..1101 300..1360 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:24:36 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 39..1101 300..1360 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:05:23 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 2..2150 2..2150 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:41 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 2..2150 2..2150 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:47 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 2..2153 2..2153 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:48 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 2..2150 2..2150 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:24:36 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 17..2169 1..2153 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:40 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14298241..14298547 1..307 99 -> Plus
3R 14298790..14298987 308..505 100 -> Plus
3R 14300420..14301018 506..1104 100 -> Plus
3R 14301228..14302276 1105..2153 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:40 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14298241..14298547 1..307 99 -> Plus
3R 14298790..14298987 308..505 100 -> Plus
3R 14300420..14301018 506..1104 100 -> Plus
3R 14301228..14302276 1105..2153 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:40 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14298241..14298547 1..307 99 -> Plus
3R 14298790..14298987 308..505 100 -> Plus
3R 14300420..14301018 506..1104 100 -> Plus
3R 14301228..14302276 1105..2153 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:47 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10123963..10124269 1..307 99 -> Plus
arm_3R 10124512..10124709 308..505 100 -> Plus
arm_3R 10126142..10126740 506..1104 100 -> Plus
arm_3R 10126950..10127998 1105..2153 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:35 Download gff for RH05737.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14039072..14039378 1..307 99 -> Plus
3R 14039621..14039818 308..505 100 -> Plus
3R 14041251..14041849 506..1104 100 -> Plus
3R 14042059..14043107 1105..2153 99   Plus

RH05737.pep Sequence

Translation from 328 to 1359

> RH05737.pep
MDDSEFMFNEKQSIRDSGRTLKRYGSTCCNSLRNNETLIRHIVEKTDTLQ
GIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPVEKNSPYYPQVPGDSI
AAFDAVLATPPGTPDANGQREAHNNANNLSQSNKSFMKSNDISSSSSSSS
SGSSSSCNTSGTGPISGGSRSGGNQQQQQQQPPQRPYSIAGELLVVQAGD
EDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISES
RKYVERSKDLVSSQSDADICISATADVFPQRRHPLNNSYKTNNNDRPSQY
QRHSSTGSGNSSDTAHLLNTTQTRRVQNSLKRLEKQQDDFFEL*

RH05737.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16161-PA 362 GF16161-PA 24..362 1..343 1393 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16845-PA 366 GG16845-PA 24..366 1..343 1796 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18663-PA 365 GH18663-PA 24..365 1..343 1151 72.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
red-PG 366 CG12207-PG 24..366 1..343 1777 100 Plus
red-PF 366 CG12207-PF 24..366 1..343 1777 100 Plus
red-PE 343 CG12207-PE 1..343 1..343 1777 100 Plus
red-PD 343 CG12207-PD 1..343 1..343 1777 100 Plus
red-PA 343 CG12207-PA 1..343 1..343 1777 100 Plus
red-PC 366 CG12207-PC 24..366 1..343 1777 100 Plus
red-PB 366 CG12207-PB 24..366 1..343 1777 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10811-PA 355 GI10811-PA 24..355 1..343 1129 71.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23268-PA 360 GL23268-PA 24..360 1..343 1353 82.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11477-PA 360 GA11477-PA 24..360 1..343 1353 82 Plus
Dpse\GA23177-PA 164 GA23177-PA 27..163 196..334 639 89.2 Plus
Dpse\GA23176-PA 141 GA23176-PA 1..129 1..129 632 92.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24156-PA 366 GM24156-PA 24..366 1..343 1802 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18952-PA 856 GD18952-PA 24..349 1..326 1754 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14410-PA 343 GJ14410-PA 24..343 1..343 1137 71.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11342-PA 367 GK11342-PA 24..367 1..343 1171 74.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24226-PA 370 GE24226-PA 24..370 1..343 1795 98 Plus

RH05737.hyp Sequence

Translation from 328 to 1359

> RH05737.hyp
MDDSEFMFNEKQSIRDSGRTLKRYGSTCCNSLRNNETLIRHIVEKTDTLQ
GIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPVEKNSPYYPQVPGDSI
AAFDAVLATPPGTPDANGQREAHNNANNLSQSNKSFMKSNDISSSSSSSS
SGSSSSCNTSGTGPISGGSRSGGNQQQQQQQPPQRPYSIAGELLVVQAGD
EDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISES
RKYVERSKDLVSSQSDADICISATADVFPQRRHPLNNSYKTNNNDRPSQY
QRHSSTGSGNSSDTAHLLNTTQTRRVQNSLKRLEKQQDDFFEL*

RH05737.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PE 343 CG12207-PE 1..343 1..343 1777 100 Plus
CG12207-PD 343 CG12207-PD 1..343 1..343 1777 100 Plus
CG12207-PA 343 CG12207-PA 1..343 1..343 1777 100 Plus
CG12207-PG 366 CG12207-PG 24..366 1..343 1777 100 Plus
CG12207-PF 366 CG12207-PF 24..366 1..343 1777 100 Plus