BDGP Sequence Production Resources |
Search the DGRC for RH05939
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 59 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pu-RB |
Protein status: | RH05939.pep: gold |
Sequenced Size: | 1636 |
Gene | Date | Evidence |
---|---|---|
Pu-RB | 2009-06-22 | Replacement based on scoring |
1636 bp assembled on 2009-08-11
GenBank Submission: BT099546.1
> RH05939.complete GAGTCGGCAGATAAATTCGGAGCGAGCGCGCCAAATACAAAAGTCCGCCA CGCGTTCAGAGCCCCAATCTCAAGTCCCATAGTTCAAACAGTTCCGAGCC CGTGTCCTCGCAGAGTCCACCAATCCCAGCCAAACATCAACTCCAATCAA TCGAACATGAAGCCCCAGACAAGCGAGCAAAATGGCAGTGGCCAAAATGG CGAGGGTGCCGCAGATGCCGTGGCCGTTGCCACGATCCCCACGGGCGAAG CCTCCGCCGCCTCCGCCACGTCCGGCACCGATCTAACGGTCTCCAAAAAC AGCCAGCAGCTGAAACTGGAAATGCTCAACTTGGAGCTGGCCAGCAATGG AAGCGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAGCTGGACCACA AGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACGCTCGTATCGT CTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCCAGGGACTGATCAA GACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACCAAGGGCTACG ACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGACGAGGATCAT GACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCATGTGCGAGCA TCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTATTTGCCGTGCA ACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGAAATATTTTCG CGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGATCGCAGTGGCCGT GACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTCGTAGAGGGAGTCC ACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAACAGCAAAACTGTT ACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCAAGACCCGTGAGGA ATTCCTGAACTTAGTCAATAGCAAATAGAGTGGGCACTAGAGGACCCTAC TGAAATCCGAGACCAACTAAACCCCTACAATATTTTTGGAGGCGCTTATA TACAAACAAACAAAAATGAAACGAAACACAGGGTCCATTAGTTTATGTTT TTAGGATTGATTTCATTTAGTTAGTGCAATGATTGCGCAGCCATTTTCCT TGTTGATTTGTGTAAAAATTGTTGAAAAATTTTGTTAGCAAAATACGTTT TTTAGATAGATGAATGTAATGAGAAGCGAGATTCGAAGAGGACGAGATTT GAATACCGGTGTTGGGTAGTTTTATGTTCAATATTATATGCAGTTTTATG GCACTTGAACGATAATTTTTACAACGTATACATACGATTAATGCATTGTG CAATAAGGGAACAACTGATAATAAATCACGGCAAATTGTTTAGGGAATTT ACAATTTATAAACAGTTCACATCAAATTAATCAGATCTATAGTTATGTAT GTATGTTAACCTATATAAAGAGTTGCATTCATAATGTTCCTCGACAGGGA CCAAAGTATATTGGAAGATTTTAAATGTTAAAATTATATGCTCATTATGT AAATGACGTTGCTTGTAGTGAGTCAAAGCTGCTTATTAATTATACAATAA ATTATGTATTTAAATAACGTTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17068294..17069065 | 849..1621 | 3740 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 17061777..17062131 | 2..356 | 1715 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 17066400..17066610 | 355..565 | 1055 | 100 | Plus |
chr2R | 21145070 | chr2R | 17067877..17068043 | 565..731 | 835 | 100 | Plus |
chr2R | 21145070 | chr2R | 17068102..17068219 | 731..848 | 575 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21181836..21182612 | 849..1625 | 3855 | 99.7 | Plus |
2R | 25286936 | 2R | 21175320..21175674 | 2..356 | 1775 | 100 | Plus |
2R | 25286936 | 2R | 21179937..21180147 | 355..565 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 565..731 | 835 | 100 | Plus |
2R | 25286936 | 2R | 21181644..21181761 | 731..848 | 590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21183035..21183811 | 849..1625 | 3855 | 99.7 | Plus |
2R | 25260384 | 2R | 21176519..21176873 | 2..356 | 1775 | 100 | Plus |
2R | 25260384 | 2R | 21181136..21181346 | 355..565 | 1055 | 100 | Plus |
2R | 25260384 | 2R | 21182618..21182784 | 565..731 | 835 | 100 | Plus |
2R | 25260384 | 2R | 21182843..21182960 | 731..848 | 590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17061776..17062130 | 1..355 | 98 | -> | Plus |
chr2R | 17066401..17066610 | 356..565 | 100 | -> | Plus |
chr2R | 17067878..17068043 | 566..731 | 100 | -> | Plus |
chr2R | 17068103..17068219 | 732..848 | 99 | -> | Plus |
chr2R | 17068294..17069024 | 849..1580 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 1..822 | 157..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 1..822 | 157..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 1..822 | 157..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 1..822 | 157..978 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 3..1623 | 1..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 3..1623 | 1..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 5..1625 | 1..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RB | 5..1625 | 1..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21175319..21175673 | 1..355 | 99 | -> | Plus |
2R | 21179938..21180147 | 356..565 | 100 | -> | Plus |
2R | 21181420..21181585 | 566..731 | 100 | -> | Plus |
2R | 21181645..21181761 | 732..848 | 100 | -> | Plus |
2R | 21181836..21182608 | 849..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21175319..21175673 | 1..355 | 99 | -> | Plus |
2R | 21179938..21180147 | 356..565 | 100 | -> | Plus |
2R | 21181420..21181585 | 566..731 | 100 | -> | Plus |
2R | 21181645..21181761 | 732..848 | 100 | -> | Plus |
2R | 21181836..21182608 | 849..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21175319..21175673 | 1..355 | 99 | -> | Plus |
2R | 21179938..21180147 | 356..565 | 100 | -> | Plus |
2R | 21181420..21181585 | 566..731 | 100 | -> | Plus |
2R | 21181645..21181761 | 732..848 | 100 | -> | Plus |
2R | 21181836..21182608 | 849..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17067443..17067652 | 356..565 | 100 | -> | Plus |
arm_2R | 17068925..17069090 | 566..731 | 100 | -> | Plus |
arm_2R | 17069150..17069266 | 732..848 | 100 | -> | Plus |
arm_2R | 17062824..17063178 | 1..355 | 99 | -> | Plus |
arm_2R | 17069341..17070113 | 849..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21176518..21176872 | 1..355 | 99 | -> | Plus |
2R | 21181137..21181346 | 356..565 | 100 | -> | Plus |
2R | 21182619..21182784 | 566..731 | 100 | -> | Plus |
2R | 21182844..21182960 | 732..848 | 100 | -> | Plus |
2R | 21183035..21183807 | 849..1621 | 99 | Plus |
Translation from 0 to 977
> RH05939.pep ESADKFGASAPNTKVRHAFRAPISSPIVQTVPSPCPRRVHQSQPNINSNQ SNMKPQTSEQNGSGQNGEGAADAVAVATIPTGEASAASATSGTDLTVSKN SQQLKLEMLNLELASNGSGHEKCTFHHDLELDHKPPTREALLPDMARSYR LLLGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDH DEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFS RRLQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTV TSTMLGVFRDDPKTREEFLNLVNSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11941-PA | 285 | GF11941-PA | 1..285 | 53..325 | 1235 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22097-PA | 271 | GG22097-PA | 1..271 | 53..325 | 1434 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20729-PA | 337 | GH20729-PA | 126..337 | 114..325 | 1065 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pu-PB | 273 | CG9441-PB | 1..273 | 53..325 | 1389 | 100 | Plus |
Pu-PC | 308 | CG9441-PC | 30..308 | 46..325 | 1090 | 78.2 | Plus |
Pu-PA | 324 | CG9441-PA | 30..324 | 46..325 | 1072 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20812-PA | 274 | GI20812-PA | 1..274 | 53..325 | 1146 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10161-PA | 274 | GL10161-PA | 1..274 | 53..325 | 1148 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30270-PA | 277 | GA30270-PA | 1..277 | 53..325 | 1149 | 86.6 | Plus |
Dpse\GA30270-PB | 325 | GA30270-PB | 115..325 | 115..325 | 1127 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15814-PA | 273 | GM15814-PA | 1..273 | 53..325 | 1452 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11572-PA | 273 | GD11572-PA | 1..273 | 53..325 | 1452 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20545-PA | 270 | GJ20545-PA | 1..270 | 53..325 | 1167 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21906-PA | 321 | GK21906-PA | 64..321 | 66..325 | 1081 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12177-PA | 271 | GE12177-PA | 1..271 | 53..325 | 1427 | 98.2 | Plus |
Translation from 156 to 977
> RH05939.hyp MKPQTSEQNGSGQNGEGAADAVAVATIPTGEASAASATSGTDLTVSKNSQ QLKLEMLNLELASNGSGHEKCTFHHDLELDHKPPTREALLPDMARSYRLL LGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHDE MVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSRR LQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTS TMLGVFRDDPKTREEFLNLVNSK*