BDGP Sequence Production Resources |
Search the DGRC for RH06304
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 63 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG15201-RA |
Protein status: | RH06304.pep: gold |
Sequenced Size: | 498 |
Gene | Date | Evidence |
---|---|---|
CG15201 | 2001-12-17 | Blastp of sequenced clone |
CG15201 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15201 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15201 | 2008-04-29 | Release 5.5 accounting |
CG15201 | 2008-08-15 | Release 5.9 accounting |
CG15201 | 2008-12-18 | 5.12 accounting |
498 bp (498 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071676
> RH06304.complete GTCAGTCTCGTCACCGCGCTCCAAAGATGCACAACCGTTGCGGATCCATT TGGCTGCTGGCGGCCGTCCTGCTGCTGCTGGCGCTCCTGCTTCCGCAGGC ACTGCTGCCTACCGTCGATGCGGCCAGCGAACCCGTGTGCTCCTACCGCA ACTCGGAGGATGAGACCATCTTTCTCAAGTATCTGCCGCTGCTGAGACGC GGACAGGACTACGTGGACTTCGGCAAGGATGGCAAGTGCCTCAAGCGGGC CATCTGCACGGACACCTTCAAGACCATCGTGGAGGACTGTGGACAGCAGA AGGTCACCTGCGGCAACAAGGATCGCTTCACCGGAGTTTTCCCTGCCTGC TGCCTCAAGTGTCCCTAAATCCGAGGAGTTTCATTAAGAACAGTGTATTC AAATGTAGAAATGTAAACAGTAGACGATTAGCTAACGGAATATATGTGCT ACCCATTCAATTACAGGGTATGCGATAACTATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 11035843..11036038 | 287..482 | 980 | 100 | Plus |
chrX | 22417052 | chrX | 11035548..11035711 | 123..286 | 820 | 100 | Plus |
chrX | 22417052 | chrX | 11035357..11035478 | 2..123 | 595 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1602 | 107..38 | 114 | 65.8 | Minus |
blood | 7410 | blood BLOOD 7410bp | 3120..3158 | 351..389 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2394 | 107..37 | 109 | 63.4 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1129 | 98..35 | 109 | 65.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1168 | 158..48 | 107 | 57.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6823 | 108..35 | 105 | 61.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11035355..11035478 | 1..123 | 98 | -> | Plus |
chrX | 11035549..11035711 | 124..286 | 100 | -> | Plus |
chrX | 11035843..11036038 | 287..482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 1..342 | 27..368 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 1..342 | 27..368 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 1..342 | 27..368 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 1..342 | 27..368 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 1..342 | 27..368 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 7..489 | 1..482 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 7..489 | 1..482 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 7..489 | 1..482 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 7..489 | 1..482 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15201-RA | 7..489 | 1..482 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11144614..11144809 | 287..482 | 100 | Plus | |
X | 11144126..11144249 | 1..123 | 99 | -> | Plus |
X | 11144320..11144482 | 124..286 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11144614..11144809 | 287..482 | 100 | Plus | |
X | 11144126..11144249 | 1..123 | 99 | -> | Plus |
X | 11144320..11144482 | 124..286 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11144614..11144809 | 287..482 | 100 | Plus | |
X | 11144126..11144249 | 1..123 | 99 | -> | Plus |
X | 11144320..11144482 | 124..286 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11038159..11038282 | 1..123 | 99 | -> | Plus |
arm_X | 11038353..11038515 | 124..286 | 100 | -> | Plus |
arm_X | 11038647..11038842 | 287..482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11152224..11152347 | 1..123 | 99 | -> | Plus |
X | 11152418..11152580 | 124..286 | 100 | -> | Plus |
X | 11152712..11152907 | 287..482 | 100 | Plus |
Translation from 0 to 367
> RH06304.hyp VQSRHRAPKMHNRCGSIWLLAAVLLLLALLLPQALLPTVDAASEPVCSYR NSEDETIFLKYLPLLRRGQDYVDFGKDGKCLKRAICTDTFKTIVEDCGQQ KVTCGNKDRFTGVFPACCLKCP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15201-PA | 113 | CG15201-PA | 1..113 | 10..122 | 611 | 100 | Plus |
Translation from 26 to 367
> RH06304.pep MHNRCGSIWLLAAVLLLLALLLPQALLPTVDAASEPVCSYRNSEDETIFL KYLPLLRRGQDYVDFGKDGKCLKRAICTDTFKTIVEDCGQQKVTCGNKDR FTGVFPACCLKCP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20298-PA | 108 | GF20298-PA | 10..108 | 11..113 | 423 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18395-PA | 111 | GG18395-PA | 1..110 | 1..112 | 463 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24399-PA | 108 | GH24399-PA | 2..108 | 4..112 | 416 | 69.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15201-PA | 113 | CG15201-PA | 1..113 | 1..113 | 611 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15303-PA | 103 | GI15303-PA | 24..103 | 34..113 | 376 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20279-PA | 109 | GL20279-PA | 1..109 | 1..113 | 441 | 73.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13565-PA | 109 | GA13565-PA | 1..109 | 1..113 | 436 | 73.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11461-PA | 113 | GM11461-PA | 1..113 | 1..113 | 584 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16509-PA | 112 | GJ16509-PA | 2..111 | 4..112 | 380 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15980-PA | 94 | GK15980-PA | 13..93 | 32..112 | 398 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15913-PA | 111 | GE15913-PA | 1..111 | 1..113 | 437 | 85.8 | Plus |