Clone RH07028 Report

Search the DGRC for RH07028

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:70
Well:28
Vector:pFlc-1
Associated Gene/TranscriptCG30033-RB
Protein status:RH07028.pep: gold
Sequenced Size:991

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30033 2001-12-13 Blastp of sequenced clone
CG7741 2002-01-01 Sim4 clustering to Release 2
CG30033 2003-01-01 Sim4 clustering to Release 3
CG30033 2008-04-29 Release 5.5 accounting
CG30033 2008-08-15 Release 5.9 accounting
CG30033 2008-12-18 5.12 accounting

Clone Sequence Records

RH07028.complete Sequence

991 bp (991 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070670

> RH07028.complete
GACAGTTTGTATTCCAAGATGCAGGTGCTAGGCGGCAATCCACTCAGCTT
GTGTCTCTTGGTGATCATCACTCCGTCACTGATTGCAGCCAATCCCCTGT
GGAGTCTTGACCAGGTGGGAGCATACTTCACTGGCATCTTCCGCTCCGTA
GTGGGTCCAATATTTGGCTTTGGCCTGGCAGCCAACAGCACCGCCTTATA
AAGATTGTTCTGCTTACCGCACCAGTCCGAAGGGAACCGGCAGCTTCTCG
ACCACATCCACCACGCAATTGTCCAGCTGCTTGAGGATCAATTGGGCGGC
ATAGAAGCCGGCGGGTCCGGCGCCTACGATGCATATCCGCTTGGTGGGCG
TGGTGCTCTGGATCACCTGCAATCGGGCGGAACTCGTGTGGAGGCCACGT
CTGAAGATGTTAAGGCAATTGATGCCCATCGTGGATCAGTCGCCGATCTC
TGCTACTGGGAAAGCAGCTCGTTTTCGTATCTTACAGATAATCAGTCGGT
TTGCTAGGTGATCTTCTCAAAAAAGTTTTTTGCTAACGATGATTTCTTAT
TTACTCGTTATCTCTCGAAAGACTTTCGCCAGCAGTCCCCAAAATACCCA
ACGGAATCCAAACAAAACAGAGTATTTGCTCTCATTGCGTTATGGTAACA
CTACGTGATTTCGGTTTAATTTAATTTTTCTGAGATGAAAATTCCTATGA
AAAATCTAAAAATATATGACCCCAAGCACCGACAGTACATTAGTAATAGA
AAGCTAGGAAAGTAAGGATGTTTTAATATTGTTATACAGACAGTTGCAGC
GGAGCAAGAATTTAAATTGCGCGCCTTTTTGATACTTGATACTCTCATAA
GGCGTTTAAATATACATATCACTCCTTTCATTTCTAAAAATATTGAAAAT
TAACAAGAAGTATTTATTATTATAAAAAAATATTGAAGCATTTACAGAAA
TGTTGTAATAAATGTACTAAAAGCCAAAAAAAAAAAAAAAA

RH07028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-RB 1007 CG30033-RB 4..987 2..985 4875 99.6 Plus
dare-RA 1687 dare-RA 1..366 583..218 1830 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7180141..7181002 120..973 4125 98.8 Plus
chr2R 21145070 chr2R 7179964..7180083 2..121 600 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:20:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11292708..11293573 120..985 4285 99.7 Plus
2R 25286936 2R 11292531..11292650 2..121 600 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11293907..11294772 120..985 4285 99.6 Plus
2R 25260384 2R 11293730..11293849 2..121 600 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:17:20 has no hits.

RH07028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:17:57 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7180143..7181004 122..975 98   Plus
chr2R 7179963..7180083 1..121 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:55 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..183 19..201 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:56 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RC 1..183 19..201 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:58 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..183 19..201 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:02 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..183 19..201 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:51 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..183 19..201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:49:26 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 3..977 1..975 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:56 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..974 2..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:58 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..974 2..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:03 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 3..977 1..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:51 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..974 2..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:57 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11292530..11292650 1..121 99 -> Plus
2R 11292710..11293563 122..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:57 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11292530..11292650 1..121 99 -> Plus
2R 11292710..11293563 122..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:57 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11292530..11292650 1..121 99 -> Plus
2R 11292710..11293563 122..975 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:58 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7180035..7180155 1..121 99 -> Plus
arm_2R 7180215..7181068 122..975 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:10 Download gff for RH07028.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11293909..11294762 122..975 99   Plus
2R 11293729..11293849 1..121 99 -> Plus

RH07028.hyp Sequence

Translation from 0 to 200

> RH07028.hyp
HSLYSKMQVLGGNPLSLCLLVIITPSLIAANPLWSLDQVGAYFTGIFRSV
VGPIFGFGLAANSTAL*

RH07028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-PC 60 CG30033-PC 1..60 7..66 304 100 Plus
CG30033-PB 60 CG30033-PB 1..60 7..66 304 100 Plus

RH07028.pep Sequence

Translation from 18 to 200

> RH07028.pep
MQVLGGNPLSLCLLVIITPSLIAANPLWSLDQVGAYFTGIFRSVVGPIFG
FGLAANSTAL*

RH07028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19802-PA 60 GF19802-PA 1..59 1..59 172 55.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20187-PA 60 GG20187-PA 1..60 1..60 275 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19951-PA 63 GH19951-PA 15..60 11..58 136 56.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-PC 60 CG30033-PC 1..60 1..60 304 100 Plus
CG30033-PB 60 CG30033-PB 1..60 1..60 304 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19908-PA 63 GI19908-PA 16..57 11..57 127 59.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17725-PA 62 GL17725-PA 1..52 1..52 140 51.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24891-PA 62 GA24891-PA 1..52 1..52 140 51.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21275-PA 60 GM21275-PA 1..60 1..60 285 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10787-PA 60 GD10787-PA 1..60 1..60 285 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15076-PA 62 GJ15076-PA 8..51 9..52 138 61.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12875-PA 60 GE12875-PA 1..60 1..60 247 85 Plus