Clone RH07074 Report

Search the DGRC for RH07074

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:70
Well:74
Vector:pFlc-1
Associated Gene/TranscriptIr47a-RA
Protein status:RH07074.pep: gold
Preliminary Size:1782
Sequenced Size:2982

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12900 2002-01-01 Sim4 clustering to Release 2
CG12900 2008-04-29 Release 5.5 accounting
CG12900 2008-04-29 Picked prior to 5.5
CG12900 2008-08-15 Release 5.9 accounting
CG12900 2008-12-18 5.12 accounting

Clone Sequence Records

RH07074.complete Sequence

2982 bp assembled on 2007-12-03

GenBank Submission: BT031294

> RH07074.complete
TGGGTTTTATGGGGAAAGTAACCAAAACCGGAATAAAAGCACTACCGTAT
GGCAGGACATAAACATGTGTGTTCGAAAGTTTCCGAGCTTGGGGCACAAT
GGCTGCTCTGCCTTTAATTAAATATGTACAAACCTGGAGGTTGCCGCGGT
GTGAAAGTAATTTGAGTTTAATATTCATGCTAATTTAAATATGAAAACGC
AGTTCGCGGATTACAGTGCTTATACGTAATGCTTAGCTTGATTGCTGGTT
TTCAGAGCACTTTAGATGGGGGTTTGATATAAATTACATTAGTGGTATGC
GGATATGTACGTTTTAAAACGAAAGGCAGTTTCGTCTGTGACATCAGTTC
AGTTTCAAAAGGCCATAAAAAATGAGGCAAATAAAACTCTTAGTCTGGTT
ACTGGTCGTCGGAGTGGTTTCCTCAACGGAACAACTTCAATTCCTAAAGA
ATTTCCTAGAAGCGGTGCACAAAGAGAGATCTATTTCAACTATTCTTCTT
ATTCAAAGGAAAGTTCATAAAAATGATTTTCTGCACGGACTTTACCCCAT
ATTCTGGCCAATAATTTGCTTGGACGAAACTAAAAGAGTTGAACTAGTAA
ACAATTTTAACAAGGACTTCCTGGCACTTGTTTATATGGAATCTGAGGCG
GATACATTGCTACTGTCGGCATTGGCTGCCGATTTAAATCATATTAGAGA
CGCAAGGATTATGATCTGGTTACAGATGAGCCCTTCGGAAAATTTTCTTG
ATCGTATTGTTTTTCAGGCATCTAAGCAGAAGTTCCTTAATCTCGTGGTA
ATAGAAAATACATTAAAAACTCGACGATTTTATCCATTTCCCCAGCCAAA
AGTTCAAGTTATCGACAAACCTTTCGAGGAAAAAGAAATATATCCCGCTC
TTTGGCGCAACTTCATGGGCAAAAATGCAATAGCTGTGCCCGACTTGGTG
CCACCACGGAGTTTTAATTCTTTTGATCCAAAAACCGGTCATAGAAGGGA
AAGTGGATCTATCTACAATGTCTTCAAAGCCTTTACGCAGAGATACAATA
TTACCATGCTCCTGAAATGGCCGCTCATCAGAAATACTACCCAAGAGGAA
ATTATCGGAAAAAGTGTTCGTGGAGAGATAGACTTACCAATAACCGGACA
GTTGATTAGCTTTAGACACCCAAACGGAAGTAGGTCTCAGCCTCTTTTAG
GAATGACAGCCCTATCCATTGCTGTGCCTTGCGGCCCCGAGTTGCCAATG
TTTGATCGGTTCTTTTTGTTCTACGGATTGGCTACACCCATCACCATAAC
TGGATACTATGTCCTGCTAAACACCATAGAGATCATACTTGGAACTCTGA
GCGATCGAATCAAACGCCATCCAAGACGTAAGAAGATCCTGAATCTGGTG
CTTAATCTACGGGTATTTAGTTGCATTCTGTCCCTGCCCACTCCACAAGG
GAATCGACTTAGATCCGTCAAGGGTCAGCTGACCATGGTGATGAGTATCA
CAGGCCTAATTCTCTCCTGCATTGTGGCAGCACAAACGAGTACTATTCTC
ACCATGAAGCCCCAATACCGGCATATCAAGAACTTTCAGGAACTGAGCGA
CAGTAACATAACCGTGGTATGTAACCACCTTAACTACTTGACCATCAAGC
AGCAAATGGACCCCAAGTTTATGGCCAAGTTCATGCAGAACATCTGGATA
GTGAACAGCATTGAGCAGATGAAGATGATCTTTGATTTGAATACGAGCTA
TGCCTACCAGACATTCTCCTACAAAAAGGACCCATTTACACTGCTTCAAA
TGCACACTACCCGTAAGGCGTTTTGCAGGACCCCGGGCTTAGATTTGGTC
AGTGGACTCGCTTATACTGCGGTTCTCGAAAAGAATTCGATCTACGCACT
GGCCTTGCAGGACTACACCCTAAAGGCTTTTAGTGCCGGTCTTGTCTATT
ACTGGGCGGAAGAGTCTATTCGGGATCTTATCTCCACCGTGGGGCGTACA
CAATTTGAAAAGCTACCCATTGTGATCGGCTATCAATCTCTGAAGCTGCA
GGATTATAATGTCTGTTGGAAGATTTTACTAATCGGTGGGGCACTAGCCT
TTTGTGTATTCATCGTGGAAGTTGTCGTGGGCTTGATTAATCGTCGAATA
TGAAAGACGATGGATAGGAAAATATATTATAAAATGTTAAATATTATAAA
CCATAATCAAATTGCAATTTTAATTTATTTGCTTGCAATGCTTTCTTAAC
GTTAATAAAAATTTTAATTGTGTGTCCTAATCAGAAAAGCACCGTGTATT
CCATTCTGAAATATAAAGTATAAAGGGGGTTGCCCAAAAGCGTATACCTT
TCCTATCTATTTTCACTGTGATAAAAGAACAAATGTTGTATTAATAGTAA
TTCCAATTTAGTGGGAATATGTAACTCTTAATTTGATTACGGGCTGGCAG
AGCTTTTTACATGGGTGTCCGATTTGAAATGCATTATTGCAAAGATGCAC
GGATATGACTTTAAAATGGAAATGCACATTTCCAAGTGATTTTAGTTCAC
TAGAATTAATCCAGAAGTCATGAGGGAAGCTCAGATAATTATTTTCTTGT
TGACAAGTGCTGCAGCAGTGACCCTGAAACAATATGAATTCCTTTAAAGT
TTCCTGAAAGCAGGGGAGCAGGAACAAACGATTACTACTCTTCTGATGAT
GCAAAAGCACGTTCACACAAAGAATCTTCTTCAAGGACTATATCCATAAC
CCTGGCCCATAATCCATTTCGTTGAAACTCAAAGAATTAAGTTCATTGCT
CTGCTCTATATGAGTTCTGAAAAGGATATATTTCTCTCATCATTGGCTGC
CAATTTAAAGTTCGAAAGACTTGATAAGCCCTTTGGAAAGTCGAATATTT
TCCCTGTTCTATGGCGTAATTATATGGGATAGATCGCTTTGACATTAGAC
CACTTGGTGGAACCACGAAGTTTCTACTGGAC

RH07074.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ir47a-RA 2982 Ir47a-RA 1..2982 1..2982 14880 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6264533..6267515 2982..1 14640 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:20:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10377128..10380109 2982..1 14880 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10378327..10381308 2982..1 14880 99.9 Minus
Blast to na_te.dros performed 2019-03-15 23:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 6867..6923 1042..1100 128 71.2 Plus

RH07074.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:15:29 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6264533..6267515 1..2982 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:39:57 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
CG12900-RA 1..1782 372..2153 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:52 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
Ir47a-RA 1..1782 372..2153 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:16 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
Ir47a-RA 1..1782 372..2153 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:09 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
CG12900-RA 1..1782 372..2153 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:37 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
Ir47a-RA 1..1782 372..2153 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:02:52 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
CG12900-RA 1..2982 1..2982 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:51 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
Ir47a-RA 1..2982 1..2982 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:16 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
Ir47a-RA 1..2982 1..2982 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:09 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
CG12900-RA 1..2982 1..2982 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:37 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
Ir47a-RA 1..2982 1..2982 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:29 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10377128..10380109 1..2982 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:29 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10377128..10380109 1..2982 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:29 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10377128..10380109 1..2982 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:16 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6264633..6267614 1..2982 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:59:09 Download gff for RH07074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10378327..10381308 1..2982 99   Minus

RH07074.pep Sequence

Translation from 371 to 2152

> RH07074.pep
MRQIKLLVWLLVVGVVSSTEQLQFLKNFLEAVHKERSISTILLIQRKVHK
NDFLHGLYPIFWPIICLDETKRVELVNNFNKDFLALVYMESEADTLLLSA
LAADLNHIRDARIMIWLQMSPSENFLDRIVFQASKQKFLNLVVIENTLKT
RRFYPFPQPKVQVIDKPFEEKEIYPALWRNFMGKNAIAVPDLVPPRSFNS
FDPKTGHRRESGSIYNVFKAFTQRYNITMLLKWPLIRNTTQEEIIGKSVR
GEIDLPITGQLISFRHPNGSRSQPLLGMTALSIAVPCGPELPMFDRFFLF
YGLATPITITGYYVLLNTIEIILGTLSDRIKRHPRRKKILNLVLNLRVFS
CILSLPTPQGNRLRSVKGQLTMVMSITGLILSCIVAAQTSTILTMKPQYR
HIKNFQELSDSNITVVCNHLNYLTIKQQMDPKFMAKFMQNIWIVNSIEQM
KMIFDLNTSYAYQTFSYKKDPFTLLQMHTTRKAFCRTPGLDLVSGLAYTA
VLEKNSIYALALQDYTLKAFSAGLVYYWAEESIRDLISTVGRTQFEKLPI
VIGYQSLKLQDYNVCWKILLIGGALAFCVFIVEVVVGLINRRI*

RH07074.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19791-PA 593 GF19791-PA 6..589 7..587 1113 37.9 Plus
Dana\GF19892-PA 566 GF19892-PA 1..543 32..586 407 25.9 Plus
Dana\GF24653-PA 535 GF24653-PA 17..535 24..550 348 24.6 Plus
Dana\GF19679-PA 556 GF19679-PA 1..542 41..592 312 23.7 Plus
Dana\GF18070-PA 405 GF18070-PA 5..391 68..462 307 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25214-PA 319 GG25214-PA 1..316 278..593 1369 80.1 Plus
Dere\GG12539-PA 580 GG12539-PA 3..567 19..591 393 24.3 Plus
Dere\GG11108-PA 358 GG11108-PA 36..344 276..585 274 25.9 Plus
Dere\GG11204-PA 1047 GG11204-PA 510..1040 63..593 221 20.5 Plus
Dere\GG14021-PA 452 GG14021-PA 201..446 341..587 199 26.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21042-PA 626 GH21042-PA 31..616 17..592 652 30.6 Plus
Dgri\GH20107-PA 615 GH20107-PA 41..602 24..584 593 27.8 Plus
Dgri\GH15143-PA 602 GH15143-PA 33..599 29..592 306 23 Plus
Dgri\GH23483-PA 600 GH23483-PA 13..540 6..537 163 20.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ir47a-PA 593 CG12900-PA 1..593 1..593 3050 100 Plus
Ir94c-PB 604 CG31423-PB 21..588 17..591 436 24.7 Plus
Ir94a-PA 595 CG31164-PA 14..588 7..592 420 24.5 Plus
Ir67a-PB 584 CG12525-PB 4..569 11..586 382 24.1 Plus
Ir94b-PB 592 CG31424-PB 8..573 6..584 356 22.9 Plus
Ir51b-PA 597 CG30081-PA 96..586 84..583 229 22.6 Plus
Ir94e-PA 611 CG17379-PB 69..589 63..583 202 19.6 Plus
Ir54a-PA 586 CG14487-PA 58..572 63..584 178 20.8 Plus
Ir52c-PA 599 CG30468-PA 168..574 168..585 175 20 Plus
Ir60b-PA 577 CG42289-PA 21..567 25..584 171 20 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10462-PA 606 GI10462-PA 17..591 23..587 602 29.4 Plus
Dmoj\GI20201-PA 617 GI20201-PA 72..613 62..593 592 30.1 Plus
Dmoj\GI10463-PA 626 GI10463-PA 26..617 12..592 522 28.3 Plus
Dmoj\GI22289-PA 308 GI22289-PA 1..270 32..297 306 31.3 Plus
Dmoj\GI16935-PA 339 GI16935-PA 16..329 279..592 297 29 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11599-PA 533 GL11599-PA 116..532 182..593 698 35.4 Plus
Dper\GL24339-PA 606 GL24339-PA 8..590 6..593 463 26.1 Plus
Dper\GL23205-PA 480 GL23205-PA 8..441 6..445 361 26.4 Plus
Dper\GL10314-PA 552 GL10314-PA 18..526 25..538 347 23.4 Plus
Dper\GL10615-PA 601 GL10615-PA 91..589 78..583 230 23.4 Plus
Dper\GL11599-PA 533 GL11599-PA 1..116 1..113 215 45.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11891-PA 602 GA11891-PA 16..601 16..593 1028 37.8 Plus
Dpse\GA16244-PB 610 GA16244-PB 2..593 1..593 469 26.4 Plus
Dpse\GA26579-PA 606 GA26579-PA 16..590 14..593 468 25.8 Plus
Dpse\GA11678-PA 589 GA11678-PA 18..579 25..592 370 23.5 Plus
Dpse\GA24096-PB 606 GA24096-PB 9..591 11..585 240 21.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19468-PA 290 GM19468-PA 1..288 1..305 1346 84.3 Plus
Dsec\GM20531-PA 161 GM20531-PA 1..159 429..587 755 88.1 Plus
Dsec\GM20533-PA 233 GM20533-PA 1..208 84..296 535 48.4 Plus
Dsec\GM23668-PA 614 GM23668-PA 35..593 21..586 394 23.9 Plus
Dsec\GM26403-PA 435 GM26403-PA 33..421 24..434 264 24.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25991-PA 593 GD25991-PA 1..593 1..593 2870 90.4 Plus
Dsim\GD15174-PA 454 GD15174-PA 5..447 137..592 274 22.9 Plus
Dsim\GD17955-PA 595 GD17955-PA 22..430 54..483 273 25 Plus
Dsim\GD12908-PA 470 GD12908-PA 1..255 8..267 208 25.9 Plus
Dsim\GD11102-PA 476 GD11102-PA 66..470 173..583 179 23.1 Plus
Dsim\GD12908-PA 470 GD12908-PA 222..464 356..587 174 23.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24082-PA 618 GJ24082-PA 32..604 19..587 631 30.7 Plus
Dvir\GJ23148-PA 729 GJ23148-PA 134..710 25..587 608 30.8 Plus
Dvir\GJ20151-PA 625 GJ20151-PA 35..613 24..593 605 30.7 Plus
Dvir\GJ21417-PA 591 GJ21417-PA 88..585 75..583 204 24.4 Plus
Dvir\GJ23148-PA 729 GJ23148-PA 28..146 18..135 175 37.5 Plus
Dvir\GJ13350-PA 520 GJ13350-PA 267..511 341..586 167 26.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13138-PA 607 GK13138-PA 27..598 17..592 578 27.9 Plus
Dwil\GK18979-PA 580 GK18979-PA 2..576 6..593 518 29 Plus
Dwil\GK18011-PA 415 GK18011-PA 98..405 277..587 278 25 Plus
Dwil\GK19417-PA 599 GK19417-PA 96..583 80..583 184 21.4 Plus
Dwil\GK19347-PA 592 GK19347-PA 110..588 93..583 176 21.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21601-PA 596 GE21601-PA 1..591 1..591 2495 79.5 Plus
Dyak\GE24057-PA 614 GE24057-PA 33..600 19..593 436 25.7 Plus
Dyak\GE10272-PA 589 GE10272-PA 12..582 8..592 417 24.9 Plus
Dyak\GE21224-PA 579 GE21224-PA 1..574 8..588 351 24.3 Plus
Dyak\GE10271-PA 548 GE10271-PA 14..524 63..576 346 25.1 Plus

RH07074.hyp Sequence

Translation from 371 to 2152

> RH07074.hyp
MRQIKLLVWLLVVGVVSSTEQLQFLKNFLEAVHKERSISTILLIQRKVHK
NDFLHGLYPIFWPIICLDETKRVELVNNFNKDFLALVYMESEADTLLLSA
LAADLNHIRDARIMIWLQMSPSENFLDRIVFQASKQKFLNLVVIENTLKT
RRFYPFPQPKVQVIDKPFEEKEIYPALWRNFMGKNAIAVPDLVPPRSFNS
FDPKTGHRRESGSIYNVFKAFTQRYNITMLLKWPLIRNTTQEEIIGKSVR
GEIDLPITGQLISFRHPNGSRSQPLLGMTALSIAVPCGPELPMFDRFFLF
YGLATPITITGYYVLLNTIEIILGTLSDRIKRHPRRKKILNLVLNLRVFS
CILSLPTPQGNRLRSVKGQLTMVMSITGLILSCIVAAQTSTILTMKPQYR
HIKNFQELSDSNITVVCNHLNYLTIKQQMDPKFMAKFMQNIWIVNSIEQM
KMIFDLNTSYAYQTFSYKKDPFTLLQMHTTRKAFCRTPGLDLVSGLAYTA
VLEKNSIYALALQDYTLKAFSAGLVYYWAEESIRDLISTVGRTQFEKLPI
VIGYQSLKLQDYNVCWKILLIGGALAFCVFIVEVVVGLINRRI*

RH07074.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ir47a-PA 593 CG12900-PA 1..593 1..593 3050 100 Plus
Ir94c-PB 604 CG31423-PB 21..588 17..591 436 24.7 Plus
Ir94a-PA 595 CG31164-PA 14..588 7..592 420 24.5 Plus
Ir67a-PB 584 CG12525-PB 4..569 11..586 382 24.1 Plus
Ir94b-PB 592 CG31424-PB 8..573 6..584 356 22.9 Plus