BDGP Sequence Production Resources |
Search the DGRC for RH07074
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 70 |
Well: | 74 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ir47a-RA |
Protein status: | RH07074.pep: gold |
Preliminary Size: | 1782 |
Sequenced Size: | 2982 |
Gene | Date | Evidence |
---|---|---|
CG12900 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12900 | 2008-04-29 | Release 5.5 accounting |
CG12900 | 2008-04-29 | Picked prior to 5.5 |
CG12900 | 2008-08-15 | Release 5.9 accounting |
CG12900 | 2008-12-18 | 5.12 accounting |
2982 bp assembled on 2007-12-03
GenBank Submission: BT031294
> RH07074.complete TGGGTTTTATGGGGAAAGTAACCAAAACCGGAATAAAAGCACTACCGTAT GGCAGGACATAAACATGTGTGTTCGAAAGTTTCCGAGCTTGGGGCACAAT GGCTGCTCTGCCTTTAATTAAATATGTACAAACCTGGAGGTTGCCGCGGT GTGAAAGTAATTTGAGTTTAATATTCATGCTAATTTAAATATGAAAACGC AGTTCGCGGATTACAGTGCTTATACGTAATGCTTAGCTTGATTGCTGGTT TTCAGAGCACTTTAGATGGGGGTTTGATATAAATTACATTAGTGGTATGC GGATATGTACGTTTTAAAACGAAAGGCAGTTTCGTCTGTGACATCAGTTC AGTTTCAAAAGGCCATAAAAAATGAGGCAAATAAAACTCTTAGTCTGGTT ACTGGTCGTCGGAGTGGTTTCCTCAACGGAACAACTTCAATTCCTAAAGA ATTTCCTAGAAGCGGTGCACAAAGAGAGATCTATTTCAACTATTCTTCTT ATTCAAAGGAAAGTTCATAAAAATGATTTTCTGCACGGACTTTACCCCAT ATTCTGGCCAATAATTTGCTTGGACGAAACTAAAAGAGTTGAACTAGTAA ACAATTTTAACAAGGACTTCCTGGCACTTGTTTATATGGAATCTGAGGCG GATACATTGCTACTGTCGGCATTGGCTGCCGATTTAAATCATATTAGAGA CGCAAGGATTATGATCTGGTTACAGATGAGCCCTTCGGAAAATTTTCTTG ATCGTATTGTTTTTCAGGCATCTAAGCAGAAGTTCCTTAATCTCGTGGTA ATAGAAAATACATTAAAAACTCGACGATTTTATCCATTTCCCCAGCCAAA AGTTCAAGTTATCGACAAACCTTTCGAGGAAAAAGAAATATATCCCGCTC TTTGGCGCAACTTCATGGGCAAAAATGCAATAGCTGTGCCCGACTTGGTG CCACCACGGAGTTTTAATTCTTTTGATCCAAAAACCGGTCATAGAAGGGA AAGTGGATCTATCTACAATGTCTTCAAAGCCTTTACGCAGAGATACAATA TTACCATGCTCCTGAAATGGCCGCTCATCAGAAATACTACCCAAGAGGAA ATTATCGGAAAAAGTGTTCGTGGAGAGATAGACTTACCAATAACCGGACA GTTGATTAGCTTTAGACACCCAAACGGAAGTAGGTCTCAGCCTCTTTTAG GAATGACAGCCCTATCCATTGCTGTGCCTTGCGGCCCCGAGTTGCCAATG TTTGATCGGTTCTTTTTGTTCTACGGATTGGCTACACCCATCACCATAAC TGGATACTATGTCCTGCTAAACACCATAGAGATCATACTTGGAACTCTGA GCGATCGAATCAAACGCCATCCAAGACGTAAGAAGATCCTGAATCTGGTG CTTAATCTACGGGTATTTAGTTGCATTCTGTCCCTGCCCACTCCACAAGG GAATCGACTTAGATCCGTCAAGGGTCAGCTGACCATGGTGATGAGTATCA CAGGCCTAATTCTCTCCTGCATTGTGGCAGCACAAACGAGTACTATTCTC ACCATGAAGCCCCAATACCGGCATATCAAGAACTTTCAGGAACTGAGCGA CAGTAACATAACCGTGGTATGTAACCACCTTAACTACTTGACCATCAAGC AGCAAATGGACCCCAAGTTTATGGCCAAGTTCATGCAGAACATCTGGATA GTGAACAGCATTGAGCAGATGAAGATGATCTTTGATTTGAATACGAGCTA TGCCTACCAGACATTCTCCTACAAAAAGGACCCATTTACACTGCTTCAAA TGCACACTACCCGTAAGGCGTTTTGCAGGACCCCGGGCTTAGATTTGGTC AGTGGACTCGCTTATACTGCGGTTCTCGAAAAGAATTCGATCTACGCACT GGCCTTGCAGGACTACACCCTAAAGGCTTTTAGTGCCGGTCTTGTCTATT ACTGGGCGGAAGAGTCTATTCGGGATCTTATCTCCACCGTGGGGCGTACA CAATTTGAAAAGCTACCCATTGTGATCGGCTATCAATCTCTGAAGCTGCA GGATTATAATGTCTGTTGGAAGATTTTACTAATCGGTGGGGCACTAGCCT TTTGTGTATTCATCGTGGAAGTTGTCGTGGGCTTGATTAATCGTCGAATA TGAAAGACGATGGATAGGAAAATATATTATAAAATGTTAAATATTATAAA CCATAATCAAATTGCAATTTTAATTTATTTGCTTGCAATGCTTTCTTAAC GTTAATAAAAATTTTAATTGTGTGTCCTAATCAGAAAAGCACCGTGTATT CCATTCTGAAATATAAAGTATAAAGGGGGTTGCCCAAAAGCGTATACCTT TCCTATCTATTTTCACTGTGATAAAAGAACAAATGTTGTATTAATAGTAA TTCCAATTTAGTGGGAATATGTAACTCTTAATTTGATTACGGGCTGGCAG AGCTTTTTACATGGGTGTCCGATTTGAAATGCATTATTGCAAAGATGCAC GGATATGACTTTAAAATGGAAATGCACATTTCCAAGTGATTTTAGTTCAC TAGAATTAATCCAGAAGTCATGAGGGAAGCTCAGATAATTATTTTCTTGT TGACAAGTGCTGCAGCAGTGACCCTGAAACAATATGAATTCCTTTAAAGT TTCCTGAAAGCAGGGGAGCAGGAACAAACGATTACTACTCTTCTGATGAT GCAAAAGCACGTTCACACAAAGAATCTTCTTCAAGGACTATATCCATAAC CCTGGCCCATAATCCATTTCGTTGAAACTCAAAGAATTAAGTTCATTGCT CTGCTCTATATGAGTTCTGAAAAGGATATATTTCTCTCATCATTGGCTGC CAATTTAAAGTTCGAAAGACTTGATAAGCCCTTTGGAAAGTCGAATATTT TCCCTGTTCTATGGCGTAATTATATGGGATAGATCGCTTTGACATTAGAC CACTTGGTGGAACCACGAAGTTTCTACTGGAC
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ir47a-RA | 2982 | Ir47a-RA | 1..2982 | 1..2982 | 14880 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 6264533..6267515 | 2982..1 | 14640 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10377128..10380109 | 2982..1 | 14880 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10378327..10381308 | 2982..1 | 14880 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord2 | 7650 | accord2 QBERT 7650bp | 6867..6923 | 1042..1100 | 128 | 71.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 6264533..6267515 | 1..2982 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12900-RA | 1..1782 | 372..2153 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ir47a-RA | 1..1782 | 372..2153 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ir47a-RA | 1..1782 | 372..2153 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12900-RA | 1..1782 | 372..2153 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ir47a-RA | 1..1782 | 372..2153 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12900-RA | 1..2982 | 1..2982 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ir47a-RA | 1..2982 | 1..2982 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ir47a-RA | 1..2982 | 1..2982 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12900-RA | 1..2982 | 1..2982 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ir47a-RA | 1..2982 | 1..2982 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10377128..10380109 | 1..2982 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10377128..10380109 | 1..2982 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10377128..10380109 | 1..2982 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 6264633..6267614 | 1..2982 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10378327..10381308 | 1..2982 | 99 | Minus |
Translation from 371 to 2152
> RH07074.pep MRQIKLLVWLLVVGVVSSTEQLQFLKNFLEAVHKERSISTILLIQRKVHK NDFLHGLYPIFWPIICLDETKRVELVNNFNKDFLALVYMESEADTLLLSA LAADLNHIRDARIMIWLQMSPSENFLDRIVFQASKQKFLNLVVIENTLKT RRFYPFPQPKVQVIDKPFEEKEIYPALWRNFMGKNAIAVPDLVPPRSFNS FDPKTGHRRESGSIYNVFKAFTQRYNITMLLKWPLIRNTTQEEIIGKSVR GEIDLPITGQLISFRHPNGSRSQPLLGMTALSIAVPCGPELPMFDRFFLF YGLATPITITGYYVLLNTIEIILGTLSDRIKRHPRRKKILNLVLNLRVFS CILSLPTPQGNRLRSVKGQLTMVMSITGLILSCIVAAQTSTILTMKPQYR HIKNFQELSDSNITVVCNHLNYLTIKQQMDPKFMAKFMQNIWIVNSIEQM KMIFDLNTSYAYQTFSYKKDPFTLLQMHTTRKAFCRTPGLDLVSGLAYTA VLEKNSIYALALQDYTLKAFSAGLVYYWAEESIRDLISTVGRTQFEKLPI VIGYQSLKLQDYNVCWKILLIGGALAFCVFIVEVVVGLINRRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19791-PA | 593 | GF19791-PA | 6..589 | 7..587 | 1113 | 37.9 | Plus |
Dana\GF19892-PA | 566 | GF19892-PA | 1..543 | 32..586 | 407 | 25.9 | Plus |
Dana\GF24653-PA | 535 | GF24653-PA | 17..535 | 24..550 | 348 | 24.6 | Plus |
Dana\GF19679-PA | 556 | GF19679-PA | 1..542 | 41..592 | 312 | 23.7 | Plus |
Dana\GF18070-PA | 405 | GF18070-PA | 5..391 | 68..462 | 307 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25214-PA | 319 | GG25214-PA | 1..316 | 278..593 | 1369 | 80.1 | Plus |
Dere\GG12539-PA | 580 | GG12539-PA | 3..567 | 19..591 | 393 | 24.3 | Plus |
Dere\GG11108-PA | 358 | GG11108-PA | 36..344 | 276..585 | 274 | 25.9 | Plus |
Dere\GG11204-PA | 1047 | GG11204-PA | 510..1040 | 63..593 | 221 | 20.5 | Plus |
Dere\GG14021-PA | 452 | GG14021-PA | 201..446 | 341..587 | 199 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21042-PA | 626 | GH21042-PA | 31..616 | 17..592 | 652 | 30.6 | Plus |
Dgri\GH20107-PA | 615 | GH20107-PA | 41..602 | 24..584 | 593 | 27.8 | Plus |
Dgri\GH15143-PA | 602 | GH15143-PA | 33..599 | 29..592 | 306 | 23 | Plus |
Dgri\GH23483-PA | 600 | GH23483-PA | 13..540 | 6..537 | 163 | 20.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ir47a-PA | 593 | CG12900-PA | 1..593 | 1..593 | 3050 | 100 | Plus |
Ir94c-PB | 604 | CG31423-PB | 21..588 | 17..591 | 436 | 24.7 | Plus |
Ir94a-PA | 595 | CG31164-PA | 14..588 | 7..592 | 420 | 24.5 | Plus |
Ir67a-PB | 584 | CG12525-PB | 4..569 | 11..586 | 382 | 24.1 | Plus |
Ir94b-PB | 592 | CG31424-PB | 8..573 | 6..584 | 356 | 22.9 | Plus |
Ir51b-PA | 597 | CG30081-PA | 96..586 | 84..583 | 229 | 22.6 | Plus |
Ir94e-PA | 611 | CG17379-PB | 69..589 | 63..583 | 202 | 19.6 | Plus |
Ir54a-PA | 586 | CG14487-PA | 58..572 | 63..584 | 178 | 20.8 | Plus |
Ir52c-PA | 599 | CG30468-PA | 168..574 | 168..585 | 175 | 20 | Plus |
Ir60b-PA | 577 | CG42289-PA | 21..567 | 25..584 | 171 | 20 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10462-PA | 606 | GI10462-PA | 17..591 | 23..587 | 602 | 29.4 | Plus |
Dmoj\GI20201-PA | 617 | GI20201-PA | 72..613 | 62..593 | 592 | 30.1 | Plus |
Dmoj\GI10463-PA | 626 | GI10463-PA | 26..617 | 12..592 | 522 | 28.3 | Plus |
Dmoj\GI22289-PA | 308 | GI22289-PA | 1..270 | 32..297 | 306 | 31.3 | Plus |
Dmoj\GI16935-PA | 339 | GI16935-PA | 16..329 | 279..592 | 297 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11599-PA | 533 | GL11599-PA | 116..532 | 182..593 | 698 | 35.4 | Plus |
Dper\GL24339-PA | 606 | GL24339-PA | 8..590 | 6..593 | 463 | 26.1 | Plus |
Dper\GL23205-PA | 480 | GL23205-PA | 8..441 | 6..445 | 361 | 26.4 | Plus |
Dper\GL10314-PA | 552 | GL10314-PA | 18..526 | 25..538 | 347 | 23.4 | Plus |
Dper\GL10615-PA | 601 | GL10615-PA | 91..589 | 78..583 | 230 | 23.4 | Plus |
Dper\GL11599-PA | 533 | GL11599-PA | 1..116 | 1..113 | 215 | 45.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11891-PA | 602 | GA11891-PA | 16..601 | 16..593 | 1028 | 37.8 | Plus |
Dpse\GA16244-PB | 610 | GA16244-PB | 2..593 | 1..593 | 469 | 26.4 | Plus |
Dpse\GA26579-PA | 606 | GA26579-PA | 16..590 | 14..593 | 468 | 25.8 | Plus |
Dpse\GA11678-PA | 589 | GA11678-PA | 18..579 | 25..592 | 370 | 23.5 | Plus |
Dpse\GA24096-PB | 606 | GA24096-PB | 9..591 | 11..585 | 240 | 21.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19468-PA | 290 | GM19468-PA | 1..288 | 1..305 | 1346 | 84.3 | Plus |
Dsec\GM20531-PA | 161 | GM20531-PA | 1..159 | 429..587 | 755 | 88.1 | Plus |
Dsec\GM20533-PA | 233 | GM20533-PA | 1..208 | 84..296 | 535 | 48.4 | Plus |
Dsec\GM23668-PA | 614 | GM23668-PA | 35..593 | 21..586 | 394 | 23.9 | Plus |
Dsec\GM26403-PA | 435 | GM26403-PA | 33..421 | 24..434 | 264 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25991-PA | 593 | GD25991-PA | 1..593 | 1..593 | 2870 | 90.4 | Plus |
Dsim\GD15174-PA | 454 | GD15174-PA | 5..447 | 137..592 | 274 | 22.9 | Plus |
Dsim\GD17955-PA | 595 | GD17955-PA | 22..430 | 54..483 | 273 | 25 | Plus |
Dsim\GD12908-PA | 470 | GD12908-PA | 1..255 | 8..267 | 208 | 25.9 | Plus |
Dsim\GD11102-PA | 476 | GD11102-PA | 66..470 | 173..583 | 179 | 23.1 | Plus |
Dsim\GD12908-PA | 470 | GD12908-PA | 222..464 | 356..587 | 174 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24082-PA | 618 | GJ24082-PA | 32..604 | 19..587 | 631 | 30.7 | Plus |
Dvir\GJ23148-PA | 729 | GJ23148-PA | 134..710 | 25..587 | 608 | 30.8 | Plus |
Dvir\GJ20151-PA | 625 | GJ20151-PA | 35..613 | 24..593 | 605 | 30.7 | Plus |
Dvir\GJ21417-PA | 591 | GJ21417-PA | 88..585 | 75..583 | 204 | 24.4 | Plus |
Dvir\GJ23148-PA | 729 | GJ23148-PA | 28..146 | 18..135 | 175 | 37.5 | Plus |
Dvir\GJ13350-PA | 520 | GJ13350-PA | 267..511 | 341..586 | 167 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13138-PA | 607 | GK13138-PA | 27..598 | 17..592 | 578 | 27.9 | Plus |
Dwil\GK18979-PA | 580 | GK18979-PA | 2..576 | 6..593 | 518 | 29 | Plus |
Dwil\GK18011-PA | 415 | GK18011-PA | 98..405 | 277..587 | 278 | 25 | Plus |
Dwil\GK19417-PA | 599 | GK19417-PA | 96..583 | 80..583 | 184 | 21.4 | Plus |
Dwil\GK19347-PA | 592 | GK19347-PA | 110..588 | 93..583 | 176 | 21.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21601-PA | 596 | GE21601-PA | 1..591 | 1..591 | 2495 | 79.5 | Plus |
Dyak\GE24057-PA | 614 | GE24057-PA | 33..600 | 19..593 | 436 | 25.7 | Plus |
Dyak\GE10272-PA | 589 | GE10272-PA | 12..582 | 8..592 | 417 | 24.9 | Plus |
Dyak\GE21224-PA | 579 | GE21224-PA | 1..574 | 8..588 | 351 | 24.3 | Plus |
Dyak\GE10271-PA | 548 | GE10271-PA | 14..524 | 63..576 | 346 | 25.1 | Plus |
Translation from 371 to 2152
> RH07074.hyp MRQIKLLVWLLVVGVVSSTEQLQFLKNFLEAVHKERSISTILLIQRKVHK NDFLHGLYPIFWPIICLDETKRVELVNNFNKDFLALVYMESEADTLLLSA LAADLNHIRDARIMIWLQMSPSENFLDRIVFQASKQKFLNLVVIENTLKT RRFYPFPQPKVQVIDKPFEEKEIYPALWRNFMGKNAIAVPDLVPPRSFNS FDPKTGHRRESGSIYNVFKAFTQRYNITMLLKWPLIRNTTQEEIIGKSVR GEIDLPITGQLISFRHPNGSRSQPLLGMTALSIAVPCGPELPMFDRFFLF YGLATPITITGYYVLLNTIEIILGTLSDRIKRHPRRKKILNLVLNLRVFS CILSLPTPQGNRLRSVKGQLTMVMSITGLILSCIVAAQTSTILTMKPQYR HIKNFQELSDSNITVVCNHLNYLTIKQQMDPKFMAKFMQNIWIVNSIEQM KMIFDLNTSYAYQTFSYKKDPFTLLQMHTTRKAFCRTPGLDLVSGLAYTA VLEKNSIYALALQDYTLKAFSAGLVYYWAEESIRDLISTVGRTQFEKLPI VIGYQSLKLQDYNVCWKILLIGGALAFCVFIVEVVVGLINRRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ir47a-PA | 593 | CG12900-PA | 1..593 | 1..593 | 3050 | 100 | Plus |
Ir94c-PB | 604 | CG31423-PB | 21..588 | 17..591 | 436 | 24.7 | Plus |
Ir94a-PA | 595 | CG31164-PA | 14..588 | 7..592 | 420 | 24.5 | Plus |
Ir67a-PB | 584 | CG12525-PB | 4..569 | 11..586 | 382 | 24.1 | Plus |
Ir94b-PB | 592 | CG31424-PB | 8..573 | 6..584 | 356 | 22.9 | Plus |