Clone RH07835 Report

Search the DGRC for RH07835

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:78
Well:35
Vector:pFlc-1
Associated Gene/TranscriptTpnC41C-RA
Protein status:RH07835.pep: gold
Preliminary Size:756
Sequenced Size:747

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2981 2002-01-01 Sim4 clustering to Release 2
CG2981 2002-01-03 Blastp of sequenced clone
CG2981 2003-01-01 Sim4 clustering to Release 3
TpnC41C 2008-04-29 Release 5.5 accounting
TpnC41C 2008-08-15 Release 5.9 accounting
TpnC41C 2008-12-18 5.12 accounting

Clone Sequence Records

RH07835.complete Sequence

747 bp (747 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075534

> RH07835.complete
GATAGCCCATATGTGTTTTAATCGCGTCAATACCAAGTTTATTTCTCGTC
TTCAATTGTTTATTTAGCTTTTAATTAACGGAGTGTTCAATTTTTTAATA
TTAGAGATTAATCCAAAGAGCTAAAAAAATGAGCGATGAATTGACTAAGG
AGCAAACTGCATTACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAA
AATGGATATATCAACACAGCTATGGTGGGTACGATACTTAGCATGTTGGG
TCATCAACTTGATGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATG
AGGATGGTTCGGGCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCC
CGCTTCCTTGTGGAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGA
AGCTTTCCGCCTTTACGACAAAGAAGGAAATGGATATATAACTACTGGTG
TTCTTCGTGAAATCCTGCGCGAACTAGACGATAAATTGACAAATGACGAC
CTGGACATGATGATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGA
TTTTGATGAATTTATGGAAGTAATGACCGGTGGCGACGACTAAAACAATA
TCAAAAGAGTACATCGAAATAAGTATTTTAATTTAAACAATGCAATCAAA
ATTGAATGACATGAGAAAAAATTATATTATATTATTTTGTCTAAAGTAAA
TAAGTAAATTGATCGTATGAAAACGTAAAACAAAAAAAAAAAAAAAA

RH07835.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C.b 1939 TpnC41C.b 157..885 2..730 3645 100 Plus
TpnC41C-RA 886 TpnC41C-RA 157..885 2..730 3645 100 Plus
TpnC41C.a 722 TpnC41C.a 97..654 2..559 2790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 954058..954453 558..163 1965 99.7 Minus
chr2R 21145070 chr2R 953822..953994 730..558 865 100 Minus
chr2R 21145070 chr2R 957517..957650 135..2 670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:20:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5066528..5066923 558..163 1980 100 Minus
2R 25286936 2R 5066292..5066464 730..558 865 100 Minus
2R 25286936 2R 5069981..5070114 135..2 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5067727..5068122 558..163 1980 100 Minus
2R 25260384 2R 5067491..5067663 730..558 865 100 Minus
2R 25260384 2R 5071180..5071313 135..2 670 100 Minus
2R 25260384 2R 5068176..5068203 162..135 140 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:41:55 has no hits.

RH07835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:42:33 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 953821..953993 559..731 99 <- Minus
chr2R 954058..954453 163..558 99 <- Minus
chr2R 954507..954534 135..162 100 <- Minus
chr2R 957518..957650 1..134 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:09 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 1..465 129..593 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:55:01 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 1..465 129..593 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:30:42 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 1..465 129..593 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:37:32 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 1..465 129..593 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:23 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 1..465 129..593 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:08:10 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 96..825 1..731 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:55:00 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 96..825 1..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:30:42 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RB 96..825 1..731 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:37:32 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 96..825 1..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:23 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RB 96..825 1..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:33 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5066291..5066463 559..731 99 <- Minus
2R 5066528..5066923 163..558 100 <- Minus
2R 5066977..5067004 135..162 100 <- Minus
2R 5069982..5070114 1..134 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:33 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5066291..5066463 559..731 99 <- Minus
2R 5066528..5066923 163..558 100 <- Minus
2R 5066977..5067004 135..162 100 <- Minus
2R 5069982..5070114 1..134 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:33 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5066291..5066463 559..731 99 <- Minus
2R 5066528..5066923 163..558 100 <- Minus
2R 5066977..5067004 135..162 100 <- Minus
2R 5069982..5070114 1..134 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:30:42 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 953796..953968 559..731 99 <- Minus
arm_2R 954033..954428 163..558 100 <- Minus
arm_2R 954482..954509 135..162 100 <- Minus
arm_2R 957487..957619 1..134 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:20:24 Download gff for RH07835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5067727..5068122 163..558 100 <- Minus
2R 5068176..5068203 135..162 100 <- Minus
2R 5071181..5071313 1..134 99   Minus
2R 5067490..5067662 559..731 99 <- Minus

RH07835.pep Sequence

Translation from 128 to 592

> RH07835.pep
MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLA
DIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEG
NGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMT
GGDD*

RH07835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13927-PA 173 GF13927-PA 29..173 10..154 726 97.9 Plus
Dana\GF12423-PA 155 GF12423-PA 4..154 1..151 516 66.2 Plus
Dana\GF10103-PA 155 GF10103-PA 6..154 3..151 501 65.1 Plus
Dana\GF13971-PA 161 GF13971-PA 12..160 4..151 446 59.7 Plus
Dana\GF14383-PA 143 GF14383-PA 3..142 12..151 412 57.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10878-PA 289 GG10878-PA 138..289 3..154 773 100 Plus
Dere\GG22682-PA 155 GG22682-PA 4..154 1..151 499 64.2 Plus
Dere\GG13604-PA 155 GG13604-PA 6..154 3..151 497 64.4 Plus
Dere\GG10858-PA 158 GG10858-PA 5..153 4..151 440 59.7 Plus
Dere\GG25060-PA 143 GG25060-PA 3..142 12..151 407 57.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21731-PA 152 GH21731-PA 1..152 3..154 746 97.4 Plus
Dgri\GH21939-PA 154 GH21939-PA 3..153 1..151 511 66.2 Plus
Dgri\GH16402-PA 155 GH16402-PA 6..154 3..151 498 64.4 Plus
Dgri\GH21732-PA 154 GH21732-PA 5..153 4..151 415 56.4 Plus
Dgri\GH21490-PA 143 GH21490-PA 3..142 12..151 405 56.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-PB 154 CG2981-PB 1..154 1..154 778 100 Plus
TpnC41C-PA 154 CG2981-PA 1..154 1..154 778 100 Plus
TpnC47D-PB 155 CG9073-PB 4..154 1..151 498 64.2 Plus
TpnC47D-PA 155 CG9073-PA 4..154 1..151 498 64.2 Plus
TpnC73F-PC 155 CG7930-PC 4..154 1..151 494 63.6 Plus
TpnC73F-PA 155 CG7930-PA 4..154 1..151 494 63.6 Plus
TpnC4-PB 153 CG12408-PB 5..153 4..151 436 59.7 Plus
TpnC4-PA 153 CG12408-PA 5..153 4..151 436 59.7 Plus
TpnC25D-PC 149 CG6514-PC 5..148 8..151 423 56.2 Plus
TpnC25D-PA 149 CG6514-PA 5..148 8..151 423 56.2 Plus
TpnC25D-PB 143 CG6514-PB 3..142 12..151 420 57.1 Plus
Cam-PD 149 CG8472-PD 1..147 1..150 347 44.7 Plus
Cam-PC 149 CG8472-PC 1..147 1..150 347 44.7 Plus
Cam-PE 149 CG8472-PE 1..147 1..150 347 44.7 Plus
Cam-PB 149 CG8472-PB 1..147 1..150 347 44.7 Plus
Cam-PA 149 CG8472-PA 1..147 1..150 347 44.7 Plus
Acam-PB 148 CG17769-PB 3..142 4..146 287 39.2 Plus
Acam-PA 148 CG17769-PA 3..142 4..146 287 39.2 Plus
CG31960-PA 148 CG31960-PA 2..146 3..150 276 38.5 Plus
CG11638-PA 387 CG11638-PA 206..360 5..154 259 34.8 Plus
azot-PA 148 CG11165-PA 2..146 3..150 249 34.5 Plus
CG30378-PA 148 CG30378-PA 1..146 1..149 233 29.5 Plus
CG17493-PD 182 CG17493-PD 34..176 4..149 219 33.6 Plus
CG17493-PC 182 CG17493-PC 34..176 4..149 219 33.6 Plus
CG17493-PB 182 CG17493-PB 34..176 4..149 219 33.6 Plus
CG17770-PA 164 CG17770-PA 20..162 5..150 208 30.8 Plus
CG31802-PA 186 CG31802-PA 38..180 4..149 183 27.4 Plus
CG13526-PA 154 CG13526-PA 7..150 3..149 177 26.5 Plus
CG5024-PB 165 CG5024-PB 21..162 5..149 168 26.9 Plus
CG5024-PA 165 CG5024-PA 21..162 5..149 168 26.9 Plus
Eip63F-1-PB 161 CG15855-PB 8..160 13..149 162 25.5 Plus
Eip63F-1-PD 166 CG15855-PD 13..165 13..149 162 25.5 Plus
Eip63F-1-PC 181 CG15855-PC 28..180 13..149 162 25.5 Plus
Eip63F-1-PA 193 CG15855-PA 40..192 13..149 162 25.5 Plus
Mlc-c-PA 147 CG3201-PA 5..147 6..152 161 26.5 Plus
CG13898-PA 151 CG13898-PA 19..145 16..145 151 26.2 Plus
CanB-PB 170 CG4209-PB 58..161 52..153 150 33.6 Plus
CanB-PA 170 CG4209-PA 58..161 52..153 150 33.6 Plus
Mlc-c-PB 153 CG3201-PB 19..153 14..152 148 25.9 Plus
sqh-PE 174 CG3595-PE 32..167 9..152 147 29.2 Plus
sqh-PD 174 CG3595-PD 32..167 9..152 147 29.2 Plus
sqh-PC 174 CG3595-PC 32..167 9..152 147 29.2 Plus
sqh-PB 174 CG3595-PB 32..167 9..152 147 29.2 Plus
sqh-PA 174 CG3595-PA 32..167 9..152 147 29.2 Plus
CG17493-PD 182 CG17493-PD 34..104 80..150 138 39.4 Plus
CG17493-PC 182 CG17493-PC 34..104 80..150 138 39.4 Plus
CG17493-PB 182 CG17493-PB 34..104 80..150 138 39.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18874-PA 186 GI18874-PA 35..186 3..154 758 98.7 Plus
Dmoj\GI19647-PA 155 GI19647-PA 4..154 1..151 515 66.2 Plus
Dmoj\GI12482-PA 155 GI12482-PA 6..154 3..151 496 64.4 Plus
Dmoj\GI18875-PA 220 GI18875-PA 9..156 4..150 433 57.4 Plus
Dmoj\GI24238-PA 143 GI24238-PA 3..142 12..151 411 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11049-PA 207 GL11049-PA 54..207 1..154 752 96.8 Plus
Dper\GL11919-PA 155 GL11919-PA 6..154 3..151 499 64.4 Plus
Dper\GL16748-PA 155 GL16748-PA 4..154 1..151 499 64.2 Plus
Dper\GL15651-PA 422 GL15651-PA 272..420 4..151 442 59.1 Plus
Dper\GL19565-PA 149 GL19565-PA 5..148 8..151 397 54.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\TpnCIa-PA 155 GA23964-PA 6..154 3..151 499 64.4 Plus
Dpse\TpnCIb-PA 155 GA21520-PA 4..154 1..151 499 64.2 Plus
Dpse\TpnCIIIb-PA 174 GA11615-PA 24..172 4..151 434 59.1 Plus
Dpse\TpnCII-PA 149 GA19654-PA 5..148 8..151 397 54.2 Plus
Dpse\TpnCIIIa-PA 70 GA27673-PA 1..70 85..154 342 98.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13554-PA 131 GM13554-PA 1..127 1..128 533 86.7 Plus
Dsec\GM20459-PA 155 GM20459-PA 4..154 1..151 499 64.2 Plus
Dsec\GM25686-PA 155 GM25686-PA 6..154 3..151 497 64.4 Plus
Dsec\GM16508-PA 155 GM16508-PA 5..153 4..151 435 58.4 Plus
Dsec\GM18540-PA 143 GM18540-PA 3..142 12..151 407 57.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16679-PA 154 GD16679-PA 1..154 1..154 775 100 Plus
Dsim\TpnC47D-PA 155 GD25928-PA 4..154 1..151 499 64.2 Plus
Dsim\GD14691-PA 155 GD14691-PA 6..154 3..151 497 64.4 Plus
Dsim\GD10357-PA 155 GD10357-PA 5..153 4..151 433 58.4 Plus
Dsim\GD23329-PA 149 GD23329-PA 5..148 8..151 409 56.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TpnCIIIa-PA 158 GJ21908-PA 7..158 3..154 761 99.3 Plus
Dvir\TpnCIb-PA 155 GJ15012-PA 4..154 1..151 516 66.2 Plus
Dvir\TpnCIa-PA 158 GJ12386-PA 9..157 3..151 496 64.4 Plus
Dvir\TpnCIIIb-PA 189 GJ21909-PA 4..154 4..153 420 55.6 Plus
Dvir\TpnCII-PA 143 GJ21496-PA 3..142 12..151 416 57.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21371-PA 151 GK21371-PA 9..151 12..154 688 95.8 Plus
Dwil\GK21627-PA 155 GK21627-PA 4..154 1..151 516 66.2 Plus
Dwil\GK15267-PA 155 GK15267-PA 6..154 3..151 502 65.1 Plus
Dwil\GK21946-PA 557 GK21946-PA 405..555 2..151 455 58.3 Plus
Dwil\GK21094-PA 150 GK21094-PA 6..149 8..151 415 56.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11315-PA 152 GE11315-PA 1..152 3..154 765 100 Plus
Dyak\TpnC47D-PA 155 GE13037-PA 4..154 1..151 499 64.2 Plus
Dyak\GE19899-PA 155 GE19899-PA 6..154 3..151 497 64.4 Plus
Dyak\TpnC4-PA 170 GE11292-PA 17..165 4..151 436 58.4 Plus
Dyak\GE25333-PA 143 GE25333-PA 3..142 12..151 405 57.1 Plus

RH07835.hyp Sequence

Translation from 128 to 592

> RH07835.hyp
MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLA
DIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEG
NGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMT
GGDD*

RH07835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-PB 154 CG2981-PB 1..154 1..154 778 100 Plus
TpnC41C-PA 154 CG2981-PA 1..154 1..154 778 100 Plus
TpnC47D-PB 155 CG9073-PB 4..154 1..151 498 64.2 Plus
TpnC47D-PA 155 CG9073-PA 4..154 1..151 498 64.2 Plus
TpnC73F-PC 155 CG7930-PC 4..154 1..151 494 63.6 Plus