Clone RH07911 Report

Search the DGRC for RH07911

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:79
Well:11
Vector:pFlc-1
Associated Gene/TranscriptPIP4K-RA
Protein status:RH07911.pep: gold
Preliminary Size:1219
Sequenced Size:1452

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17471 2002-01-01 Sim4 clustering to Release 2
CG17471 2008-04-29 Release 5.5 accounting
CG17471 2008-08-15 Release 5.9 accounting
CG17471 2008-12-18 5.12 accounting

Clone Sequence Records

RH07911.complete Sequence

1452 bp (1452 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075535

> RH07911.complete
GATATTATAAATTTATGTAAACTACAAATTTGTCTGTTCAAAAGCCTGCG
AGTCATTGTAAAATACAATAATCATATCTGCAAATAATTTTAGCCACCCA
AAATATGGAAAAAAAGATCTCATCGTCATCCCAGCCCCGGATTTTAAAAA
AGAAGCACTTCAGGGTTAAGCATCAAAAGGTTAAATTATTTAGAGCCAAT
GAACCAATTTTAAGTGTGTTCATGTGGGGAATAAATCACACTATTAATGA
ATTAAGTCACGTTAATATACCTGTAATGCTTTTGCCGGACGATTTTCGAG
CTTATTCTAAAATTAAGGTGGATAATCATCTATTTAATAAAGAAAACATG
CCGTCACATTTCAAAGTCAAGGAATATTGCCCCCTTGTGTTTCGAAATTT
ACGTGAAAGATTTGGCGTTGATGATGTTGATTACCGCGAGTCCTTAACTC
GATCCCAACCTATTCAAATTGATTCGTCTGGAAAATCAGGAGCGCAATTT
TATCAGAGTTATGATAAGTTTTTTATAATAAAAAGTTTGACATCGGAAGA
AATTGAACGAATGCACGCATTTTTAAAGCAATACCATCCGTACGTTGTGG
AGAGACACGGAAAAACGCTGTTACCTCAATACTTGGGAATGTATCGTATC
ACTGTAGAAAGCGTGCAATATTACTTCGTTGTCATGAGGAATGTTTTCAG
CTCCCACTTGACAATACACAAAAAGTTTGATTTAAAAGGTAGCACCGTTG
ATCGGGAAGCATCAGAAAAGGAACTTGAAAAAAATTTGCCGACTTTCAAG
GACAATGATTTTATAAAACAAAAAGTGAAATTAGACATTGGAAAGGAAGC
TAAGGACAAACTAATGGACACGCTGAGCAACGATGTGGATCTTTTAACCA
AGTTGCACATTATGGATTACTCTTTGTTGGTCGGCGTGCATGACTGTGTT
CGTGCAGAGGAGGAAGCTTTGCAGGGAGATAATATACTAACTGTTGGTCG
CAGTGAGAACAGCGAAAGCGAGGAATGCGATAGCGGGGAACGCTGGACGT
ATAACACTCCTCCCGATTCTCCAAGAGGTGCACAGTATAAGGAAGTCGTT
TATGAAGTTGATATATATGACATTCCAAGTATTGAAGAAAAACGCGAAAT
TTACTTTATTGCAATTATTGACGTTCTTACACAATATGGAGTAAAAAAAC
AGGCAGCTAAAGCAGCCAAAACTGTTAAATATGGCAGTAATGTTGACGGT
ATATCAACCTGTGACCCTGAACAATATGCCAAACGATTCTTGGACTTTAT
GGATAAAGCTATAGAATAAAGTATTATACTCATTATGTATTTGCCACATT
CAAAATGTCAAAAATGTATTTATCTAAGACATAAAATATAAGATATTATT
TTGAAGCTTCCAGATGATCATCTTTTGGACGAATGCAAAAAAAAAAAAAA
AA

RH07911.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17471-RB 1500 CG17471-RB 15..1452 2..1439 7190 100 Plus
CG17471.b 1535 CG17471.b 158..1512 85..1439 6775 100 Plus
CG17471.a 1522 CG17471.a 135..1252 85..1202 5590 100 Plus
CG17471.a 1522 CG17471.a 1261..1499 1201..1439 1195 100 Plus
CG17471.a 1522 CG17471.a 2..84 2..84 415 100 Plus
CG17471.b 1535 CG17471.b 2..84 2..84 415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 1216316..1216565 590..341 1250 100 Minus
chr4 1351717 chr4 1212893..1213128 1436..1201 1180 100 Minus
chr4 1351717 chr4 1215902..1216070 890..722 845 100 Minus
chr4 1351717 chr4 1216794..1216951 242..85 790 100 Minus
chr4 1351717 chr4 1214182..1214333 1042..891 760 100 Minus
chr4 1351717 chr4 1216134..1216265 721..590 660 100 Minus
chr4 1351717 chr4 1216639..1216736 340..243 490 100 Minus
chr4 1351717 chr4 1214034..1214129 1137..1042 480 100 Minus
chr4 1351717 chr4 1217232..1217314 84..2 415 100 Minus
chr4 1351717 chr4 1213179..1213253 1203..1129 360 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:20:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1195842..1196091 590..341 1250 100 Minus
4 1348131 4 1192416..1192654 1439..1201 1195 100 Minus
4 1348131 4 1195428..1195596 890..722 845 100 Minus
4 1348131 4 1196320..1196477 242..85 790 100 Minus
4 1348131 4 1193708..1193859 1042..891 760 100 Minus
4 1348131 4 1195660..1195791 721..590 660 100 Minus
4 1348131 4 1196165..1196262 340..243 490 100 Minus
4 1348131 4 1193560..1193655 1137..1042 480 100 Minus
4 1348131 4 1196758..1196840 84..2 415 100 Minus
4 1348131 4 1192705..1192779 1203..1129 360 98.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 1195842..1196091 590..341 1250 100 Minus
4 1331231 4 1192416..1192654 1439..1201 1195 100 Minus
4 1331231 4 1195428..1195596 890..722 845 100 Minus
4 1331231 4 1196320..1196477 242..85 790 100 Minus
4 1331231 4 1193708..1193859 1042..891 760 100 Minus
4 1331231 4 1195660..1195791 721..590 660 100 Minus
4 1331231 4 1196165..1196262 340..243 490 100 Minus
4 1331231 4 1193560..1193655 1137..1042 480 100 Minus
4 1331231 4 1196758..1196840 84..2 415 100 Minus
4 1331231 4 1192705..1192779 1203..1129 360 98.6 Minus
Blast to na_te.dros performed on 2019-03-16 07:01:32 has no hits.

RH07911.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:02:18 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 1214034..1214128 1043..1137 100 <- Minus
chr4 1214182..1214333 891..1042 100 <- Minus
chr4 1215902..1216070 722..890 100 <- Minus
chr4 1216134..1216264 591..721 100 <- Minus
chr4 1216316..1216565 341..590 100 <- Minus
chr4 1216639..1216736 243..340 100 <- Minus
chr4 1216794..1216951 85..242 100 <- Minus
chr4 1217232..1217314 1..84 98   Minus
chr4 1212893..1213126 1203..1436 100 <- Minus
chr4 1213180..1213244 1138..1202 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:12 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
CG17471-RB 1..1215 105..1319 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:12 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
CG17471-RB 1..1215 105..1319 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:42:58 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
PIP4K-RA 1..1215 105..1319 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:09 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
CG17471-RB 1..1215 105..1319 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:25:02 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
PIP4K-RA 1..1215 105..1319 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:18:57 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
CG17471-RB 1..1435 2..1436 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:12 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
CG17471-RB 1..1435 2..1436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:58 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
PIP4K-RB 8..1443 1..1436 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:10 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
CG17471-RB 1..1435 2..1436 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:25:02 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
PIP4K-RB 8..1443 1..1436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:02:18 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
4 1192419..1192652 1203..1436 100 <- Minus
4 1192706..1192770 1138..1202 100 <- Minus
4 1193560..1193654 1043..1137 100 <- Minus
4 1193708..1193859 891..1042 100 <- Minus
4 1195428..1195596 722..890 100 <- Minus
4 1195660..1195790 591..721 100 <- Minus
4 1195842..1196091 341..590 100 <- Minus
4 1196165..1196262 243..340 100 <- Minus
4 1196320..1196477 85..242 100 <- Minus
4 1196758..1196840 1..84 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:02:18 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
4 1192419..1192652 1203..1436 100 <- Minus
4 1192706..1192770 1138..1202 100 <- Minus
4 1193560..1193654 1043..1137 100 <- Minus
4 1193708..1193859 891..1042 100 <- Minus
4 1195428..1195596 722..890 100 <- Minus
4 1195660..1195790 591..721 100 <- Minus
4 1195842..1196091 341..590 100 <- Minus
4 1196165..1196262 243..340 100 <- Minus
4 1196320..1196477 85..242 100 <- Minus
4 1196758..1196840 1..84 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:02:18 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
4 1192419..1192652 1203..1436 100 <- Minus
4 1192706..1192770 1138..1202 100 <- Minus
4 1193560..1193654 1043..1137 100 <- Minus
4 1193708..1193859 891..1042 100 <- Minus
4 1195428..1195596 722..890 100 <- Minus
4 1195660..1195790 591..721 100 <- Minus
4 1195842..1196091 341..590 100 <- Minus
4 1196165..1196262 243..340 100 <- Minus
4 1196320..1196477 85..242 100 <- Minus
4 1196758..1196840 1..84 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:58 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1216286..1216416 591..721 100 <- Minus
arm_4 1216468..1216717 341..590 100 <- Minus
arm_4 1216791..1216888 243..340 100 <- Minus
arm_4 1216946..1217103 85..242 100 <- Minus
arm_4 1217384..1217466 1..84 98   Minus
arm_4 1213045..1213278 1203..1436 100 <- Minus
arm_4 1213332..1213396 1138..1202 100 <- Minus
arm_4 1214186..1214280 1043..1137 100 <- Minus
arm_4 1214334..1214485 891..1042 100 <- Minus
arm_4 1216054..1216222 722..890 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:54:37 Download gff for RH07911.complete
Subject Subject Range Query Range Percent Splice Strand
4 1196165..1196262 243..340 100 <- Minus
4 1196320..1196477 85..242 100 <- Minus
4 1196758..1196840 1..84 98   Minus
4 1192419..1192652 1203..1436 100 <- Minus
4 1192706..1192770 1138..1202 100 <- Minus
4 1193560..1193654 1043..1137 100 <- Minus
4 1193708..1193859 891..1042 100 <- Minus
4 1195428..1195596 722..890 100 <- Minus
4 1195660..1195790 591..721 100 <- Minus
4 1195842..1196091 341..590 100 <- Minus

RH07911.pep Sequence

Translation from 104 to 1318

> RH07911.pep
MEKKISSSSQPRILKKKHFRVKHQKVKLFRANEPILSVFMWGINHTINEL
SHVNIPVMLLPDDFRAYSKIKVDNHLFNKENMPSHFKVKEYCPLVFRNLR
ERFGVDDVDYRESLTRSQPIQIDSSGKSGAQFYQSYDKFFIIKSLTSEEI
ERMHAFLKQYHPYVVERHGKTLLPQYLGMYRITVESVQYYFVVMRNVFSS
HLTIHKKFDLKGSTVDREASEKELEKNLPTFKDNDFIKQKVKLDIGKEAK
DKLMDTLSNDVDLLTKLHIMDYSLLVGVHDCVRAEEEALQGDNILTVGRS
ENSESEECDSGERWTYNTPPDSPRGAQYKEVVYEVDIYDIPSIEEKREIY
FIAIIDVLTQYGVKKQAAKAAKTVKYGSNVDGISTCDPEQYAKRFLDFMD
KAIE*

RH07911.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23407-PA 404 GF23407-PA 1..404 1..404 2010 94.8 Plus
Dana\GF13551-PA 743 GF13551-PA 81..478 35..403 369 29.5 Plus
Dana\GF12741-PA 801 GF12741-PA 171..584 35..399 366 27.7 Plus
Dana\GF13221-PA 1812 GF13221-PA 1548..1738 102..278 164 29.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16415-PA 404 GG16415-PA 1..404 1..404 2147 99 Plus
Dere\GG20828-PA 786 GG20828-PA 153..567 35..403 393 28.6 Plus
Dere\GG22810-PA 733 GG22810-PA 80..469 35..403 383 29.1 Plus
Dere\GG21016-PA 1814 GG21016-PA 1561..1740 109..278 164 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23952-PA 404 GH23952-PA 1..404 1..404 1998 93.8 Plus
Dgri\GH19882-PA 816 GH19882-PA 158..588 21..403 393 28.9 Plus
Dgri\GH21799-PA 792 GH21799-PA 81..476 35..403 373 29.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
PIP4K-PB 404 CG17471-PB 1..404 1..404 2102 100 Plus
PIP4K-PA 404 CG17471-PA 1..404 1..404 2102 100 Plus
sktl-PC 792 CG9985-PC 156..573 32..403 391 28 Plus
sktl-PB 792 CG9985-PB 156..573 32..403 391 28 Plus
sktl-PA 792 CG9985-PA 156..573 32..403 391 28 Plus
PIP5K59B-PI 781 CG3682-PI 80..473 35..403 390 29.5 Plus
PIP5K59B-PA 729 CG3682-PA 80..469 35..403 387 30.2 Plus
PIP5K59B-PE 750 CG3682-PE 80..469 35..403 387 30.2 Plus
PIP5K59B-PH 756 CG3682-PH 80..469 35..403 387 30.2 Plus
PIP5K59B-PF 777 CG3682-PF 80..469 35..403 387 30.2 Plus
fab1-PA 1809 CG6355-PA 1556..1735 109..278 172 29.8 Plus
fab1-PB 1809 CG6355-PB 1556..1735 109..278 172 29.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14032-PA 404 GI14032-PA 1..404 1..404 1999 93.8 Plus
Dmoj\GI19831-PA 792 GI19831-PA 170..575 35..403 382 29.4 Plus
Dmoj\GI20548-PA 779 GI20548-PA 80..475 35..403 381 30.5 Plus
Dmoj\GI20437-PA 1825 GI20437-PA 1562..1753 99..280 170 28.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18405-PA 404 GL18405-PA 1..404 1..404 2027 95.5 Plus
Dper\GL10132-PA 767 GL10132-PA 70..467 35..403 377 29.9 Plus
Dper\GL17421-PA 368 GL17421-PA 152..347 35..229 197 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22167-PA 819 GA22167-PA 185..599 35..403 390 28.9 Plus
Dpse\GA25087-PB 815 GA25087-PB 83..480 35..403 379 29.9 Plus
Dpse\GA25087-PE 906 GA25087-PE 83..480 35..403 378 29.9 Plus
Dpse\GA25087-PA 751 GA25087-PA 83..480 35..403 377 29.9 Plus
Dpse\GA25087-PC 772 GA25087-PC 83..480 35..403 377 29.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13005-PA 404 GM13005-PA 1..404 1..404 2156 99.5 Plus
Dsec\GM15773-PA 792 GM15773-PA 159..573 35..403 393 28.6 Plus
Dsec\GM15967-PA 792 GM15967-PA 80..469 35..403 387 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24357-PA 404 GD24357-PA 1..383 1..381 1899 95.8 Plus
Dsim\GD25249-PA 790 GD25249-PA 157..571 35..403 393 28.6 Plus
Dsim\GD11719-PA 762 GD11719-PA 80..469 35..403 347 27.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19634-PA 404 GJ19634-PA 1..404 1..404 2003 94.3 Plus
Dvir\GJ22401-PA 805 GJ22401-PA 80..475 35..403 386 30.8 Plus
Dvir\GJ18651-PA 826 GJ18651-PA 183..436 35..287 339 34.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13624-PA 404 GK13624-PA 1..404 1..404 2019 94.8 Plus
Dwil\GK20789-PA 753 GK20789-PA 77..467 35..403 380 30.2 Plus
Dwil\GK22881-PA 780 GK22881-PA 164..569 35..403 374 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14484-PA 404 GE14484-PA 1..404 1..404 2145 98.5 Plus
Dyak\GE13767-PA 786 GE13767-PA 157..571 35..403 388 28.4 Plus
Dyak\GE14244-PA 733 GE14244-PA 80..469 35..403 381 29.1 Plus
Dyak\GE13959-PA 1285 GE13959-PA 1032..1211 109..278 171 29.3 Plus

RH07911.hyp Sequence

Translation from 104 to 1318

> RH07911.hyp
MEKKISSSSQPRILKKKHFRVKHQKVKLFRANEPILSVFMWGINHTINEL
SHVNIPVMLLPDDFRAYSKIKVDNHLFNKENMPSHFKVKEYCPLVFRNLR
ERFGVDDVDYRESLTRSQPIQIDSSGKSGAQFYQSYDKFFIIKSLTSEEI
ERMHAFLKQYHPYVVERHGKTLLPQYLGMYRITVESVQYYFVVMRNVFSS
HLTIHKKFDLKGSTVDREASEKELEKNLPTFKDNDFIKQKVKLDIGKEAK
DKLMDTLSNDVDLLTKLHIMDYSLLVGVHDCVRAEEEALQGDNILTVGRS
ENSESEECDSGERWTYNTPPDSPRGAQYKEVVYEVDIYDIPSIEEKREIY
FIAIIDVLTQYGVKKQAAKAAKTVKYGSNVDGISTCDPEQYAKRFLDFMD
KAIE*

RH07911.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
PIP4K-PB 404 CG17471-PB 1..404 1..404 2102 100 Plus
PIP4K-PA 404 CG17471-PA 1..404 1..404 2102 100 Plus
sktl-PC 792 CG9985-PC 156..573 32..403 391 28 Plus
sktl-PB 792 CG9985-PB 156..573 32..403 391 28 Plus
sktl-PA 792 CG9985-PA 156..573 32..403 391 28 Plus