BDGP Sequence Production Resources |
Search the DGRC for RH08715
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 87 |
Well: | 15 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Phax-RB |
Protein status: | RH08715.pep: gold |
Preliminary Size: | 1406 |
Sequenced Size: | 1629 |
Gene | Date | Evidence |
---|---|---|
CG8069 | 2004-03-31 | Blastp of sequenced clone |
Phax | 2008-04-29 | Release 5.5 accounting |
Phax | 2008-08-15 | Release 5.9 accounting |
Phax | 2008-12-18 | 5.12 accounting |
1629 bp (1629 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012442
> RH08715.complete GACTCTGCCGCTCAGTGTTGCACAAACAGCTGCACTTTGGGCGAAGATTT TCTCTCGACTCGCCATAAAAAAAATGATGGAACTGCACGCAAATGACGTT GACCTGGAGGACGGCGAGGTAATCATAAGCACCCAGACTACCGAGCATCT AATGACCATATCTGCCGGCCTTTCAGCTATCGGAGAGCGACGATGATGGC GTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGAAGGTGGCCAGTCC CCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAGGACGAGTCACAAA GCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGACGGGTGCATCAAG AAGCTTCGTACGGAATCCACCGGACCCGACGGCCACAAGAAGCGGAAAAA GCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCCACGGATGCTGAAA TGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTCTGCC CTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCG AAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACC GGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAG GACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAG TCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGG GTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTC TGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGAGATCC TTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAAGGACG AATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGATGTGTGCCTAGAG CTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCGGCATGATGATCAA AAACGGCATACGGAGACGTACACCAGGCGGGGTATTCCTGTTCCTAATAA AGCACCACGATAACATCACTCAGGAGCAGCAGAAGCGCATTTTTAGTGAG GATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCGAAACGTTGATGCG GGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGCAAGCAGGTTACGG AACTGCCGACGTTAAATCAGCGCAAAGAGTACTACATGCAGGGCGACGAG CAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACCCGCCACCCTCCCC TGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTACAGGACCCACGAGA TCAATATAAATCTTGTGGACAATGCGGAACTTCCCTCCACATCCAAAGCA GCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAATCAGCTACGACCA CGACTTTCTGGACGTCAATTGCGGGGACATGGACTTTTTCTAGGCCCACG CCAAGCGGCGGGCCCCTTTTATACTATTCTTGCATAGATAGACCCATATT TGTACAATTAAATAAATGCCTAGCGAATTAGGAATCTACGAAAGTAACGG TTGCTAACAAAGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phax-RB | 1636 | Phax-RB | 18..1636 | 2..1620 | 8080 | 99.9 | Plus |
Phax.b | 1659 | Phax.b | 214..1659 | 175..1620 | 7215 | 99.9 | Plus |
Phax.c | 1622 | Phax.c | 2..911 | 2..911 | 4550 | 100 | Plus |
Phax.c | 1622 | Phax.c | 918..1622 | 909..1613 | 3525 | 100 | Plus |
Phax.b | 1659 | Phax.b | 99..215 | 2..118 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5001854..5002761 | 2..909 | 4540 | 100 | Plus |
chr2R | 21145070 | chr2R | 5003297..5003631 | 1279..1613 | 1675 | 100 | Plus |
chr2R | 21145070 | chr2R | 5002962..5003238 | 1002..1278 | 1385 | 100 | Plus |
chr2R | 21145070 | chr2R | 5002816..5002908 | 909..1001 | 465 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9114276..9115183 | 2..909 | 4540 | 100 | Plus |
2R | 25286936 | 2R | 9115719..9116060 | 1279..1620 | 1695 | 99.7 | Plus |
2R | 25286936 | 2R | 9115384..9115660 | 1002..1278 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 9115238..9115330 | 909..1001 | 465 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9115475..9116382 | 2..909 | 4540 | 100 | Plus |
2R | 25260384 | 2R | 9116918..9117259 | 1279..1620 | 1695 | 99.7 | Plus |
2R | 25260384 | 2R | 9116583..9116859 | 1002..1278 | 1385 | 100 | Plus |
2R | 25260384 | 2R | 9116437..9116529 | 909..1001 | 465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5001853..5002761 | 1..909 | 99 | -> | Plus |
chr2R | 5002817..5002908 | 910..1001 | 100 | -> | Plus |
chr2R | 5002962..5003238 | 1002..1278 | 100 | -> | Plus |
chr2R | 5003297..5003631 | 1279..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 44..1362 | 175..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 44..1362 | 175..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 44..1362 | 175..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 44..1362 | 175..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 44..1362 | 175..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RB | 2..1597 | 2..1597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RB | 2..1613 | 2..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RB | 2..1591 | 1..1590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RB | 2..1597 | 2..1597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RB | 2..1591 | 1..1590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9114275..9115183 | 1..909 | 99 | -> | Plus |
2R | 9115239..9115330 | 910..1001 | 100 | -> | Plus |
2R | 9115384..9115660 | 1002..1278 | 100 | -> | Plus |
2R | 9115719..9116053 | 1279..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9114275..9115183 | 1..909 | 99 | -> | Plus |
2R | 9115239..9115330 | 910..1001 | 100 | -> | Plus |
2R | 9115384..9115660 | 1002..1278 | 100 | -> | Plus |
2R | 9115719..9116053 | 1279..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9114275..9115183 | 1..909 | 99 | -> | Plus |
2R | 9115239..9115330 | 910..1001 | 100 | -> | Plus |
2R | 9115384..9115660 | 1002..1278 | 100 | -> | Plus |
2R | 9115719..9116053 | 1279..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5001780..5002688 | 1..909 | 99 | -> | Plus |
arm_2R | 5002744..5002835 | 910..1001 | 100 | -> | Plus |
arm_2R | 5002889..5003165 | 1002..1278 | 100 | -> | Plus |
arm_2R | 5003224..5003558 | 1279..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9116918..9117252 | 1279..1613 | 100 | Plus | |
2R | 9115474..9116382 | 1..909 | 99 | -> | Plus |
2R | 9116438..9116529 | 910..1001 | 100 | -> | Plus |
2R | 9116583..9116859 | 1002..1278 | 100 | -> | Plus |
Translation from 419 to 1492
> RH08715.pep MRRVPPTDAEMQPNRARFKKYNVWASALQEDALSENMRGCDVTRSGRDRN VENYDFSLRYRLNGENTLKRRLSNSSEDGGECSHPAHKRGRPSSRPITGN QQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATE MASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRR TPGGVFLFLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMRDRKVEE LKKCLSKQVTELPTLNQRKEYYMQGDEQSEDKQPGSLSNPPPSPVGAEQE HDSPEYRTHEININLVDNAELPSTSKAAAAAQGAPLKDLISYDHDFLDVN CGDMDFF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11956-PA | 452 | GF11956-PA | 96..452 | 1..357 | 1499 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23413-PA | 453 | GG23413-PA | 97..453 | 1..357 | 1708 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19855-PA | 473 | GH19855-PA | 116..473 | 1..357 | 1282 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phax-PB | 357 | CG8069-PB | 1..357 | 1..357 | 1862 | 100 | Plus |
Phax-PA | 453 | CG8069-PA | 97..453 | 1..357 | 1862 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19804-PA | 468 | GI19804-PA | 131..468 | 11..357 | 1096 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17621-PA | 462 | GL17621-PA | 107..462 | 1..357 | 1452 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24847-PA | 462 | GA24847-PA | 107..462 | 1..357 | 1457 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21094-PA | 453 | GM21094-PA | 97..453 | 1..357 | 1858 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10631-PA | 453 | GD10631-PA | 97..453 | 1..357 | 1859 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18465-PA | 466 | GJ18465-PA | 111..466 | 1..357 | 1279 | 72.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22948-PA | 452 | GK22948-PA | 96..452 | 1..357 | 1286 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19254-PA | 453 | GE19254-PA | 97..453 | 1..357 | 1720 | 93.8 | Plus |
Translation from 419 to 1492
> RH08715.hyp MRRVPPTDAEMQPNRARFKKYNVWASALQEDALSENMRGCDVTRSGRDRN VENYDFSLRYRLNGENTLKRRLSNSSEDGGECSHPAHKRGRPSSRPITGN QQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATE MASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRR TPGGVFLFLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMRDRKVEE LKKCLSKQVTELPTLNQRKEYYMQGDEQSEDKQPGSLSNPPPSPVGAEQE HDSPEYRTHEININLVDNAELPSTSKAAAAAQGAPLKDLISYDHDFLDVN CGDMDFF*