Clone RH08715 Report

Search the DGRC for RH08715

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:87
Well:15
Vector:pFlc-1
Associated Gene/TranscriptPhax-RB
Protein status:RH08715.pep: gold
Preliminary Size:1406
Sequenced Size:1629

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8069 2004-03-31 Blastp of sequenced clone
Phax 2008-04-29 Release 5.5 accounting
Phax 2008-08-15 Release 5.9 accounting
Phax 2008-12-18 5.12 accounting

Clone Sequence Records

RH08715.complete Sequence

1629 bp (1629 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012442

> RH08715.complete
GACTCTGCCGCTCAGTGTTGCACAAACAGCTGCACTTTGGGCGAAGATTT
TCTCTCGACTCGCCATAAAAAAAATGATGGAACTGCACGCAAATGACGTT
GACCTGGAGGACGGCGAGGTAATCATAAGCACCCAGACTACCGAGCATCT
AATGACCATATCTGCCGGCCTTTCAGCTATCGGAGAGCGACGATGATGGC
GTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGAAGGTGGCCAGTCC
CCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAGGACGAGTCACAAA
GCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGACGGGTGCATCAAG
AAGCTTCGTACGGAATCCACCGGACCCGACGGCCACAAGAAGCGGAAAAA
GCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCCACGGATGCTGAAA
TGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTCTGCC
CTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCG
AAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACC
GGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAG
GACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAG
TCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGG
GTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTC
TGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGAGATCC
TTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAAGGACG
AATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGATGTGTGCCTAGAG
CTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCGGCATGATGATCAA
AAACGGCATACGGAGACGTACACCAGGCGGGGTATTCCTGTTCCTAATAA
AGCACCACGATAACATCACTCAGGAGCAGCAGAAGCGCATTTTTAGTGAG
GATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCGAAACGTTGATGCG
GGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGCAAGCAGGTTACGG
AACTGCCGACGTTAAATCAGCGCAAAGAGTACTACATGCAGGGCGACGAG
CAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACCCGCCACCCTCCCC
TGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTACAGGACCCACGAGA
TCAATATAAATCTTGTGGACAATGCGGAACTTCCCTCCACATCCAAAGCA
GCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAATCAGCTACGACCA
CGACTTTCTGGACGTCAATTGCGGGGACATGGACTTTTTCTAGGCCCACG
CCAAGCGGCGGGCCCCTTTTATACTATTCTTGCATAGATAGACCCATATT
TGTACAATTAAATAAATGCCTAGCGAATTAGGAATCTACGAAAGTAACGG
TTGCTAACAAAGTAAAAAAAAAAAAAAAA

RH08715.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1636 Phax-RB 18..1636 2..1620 8080 99.9 Plus
Phax.b 1659 Phax.b 214..1659 175..1620 7215 99.9 Plus
Phax.c 1622 Phax.c 2..911 2..911 4550 100 Plus
Phax.c 1622 Phax.c 918..1622 909..1613 3525 100 Plus
Phax.b 1659 Phax.b 99..215 2..118 585 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5001854..5002761 2..909 4540 100 Plus
chr2R 21145070 chr2R 5003297..5003631 1279..1613 1675 100 Plus
chr2R 21145070 chr2R 5002962..5003238 1002..1278 1385 100 Plus
chr2R 21145070 chr2R 5002816..5002908 909..1001 465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:20:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114276..9115183 2..909 4540 100 Plus
2R 25286936 2R 9115719..9116060 1279..1620 1695 99.7 Plus
2R 25286936 2R 9115384..9115660 1002..1278 1385 100 Plus
2R 25286936 2R 9115238..9115330 909..1001 465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9115475..9116382 2..909 4540 100 Plus
2R 25260384 2R 9116918..9117259 1279..1620 1695 99.7 Plus
2R 25260384 2R 9116583..9116859 1002..1278 1385 100 Plus
2R 25260384 2R 9116437..9116529 909..1001 465 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:24:39 has no hits.

RH08715.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:25:26 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5001853..5002761 1..909 99 -> Plus
chr2R 5002817..5002908 910..1001 100 -> Plus
chr2R 5002962..5003238 1002..1278 100 -> Plus
chr2R 5003297..5003631 1279..1613 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:27 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 44..1362 175..1493 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:28 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 44..1362 175..1493 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:09:49 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 44..1362 175..1493 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:16 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 44..1362 175..1493 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:12 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 44..1362 175..1493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:08 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 2..1597 2..1597 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:28 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 2..1613 2..1613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:49 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 2..1591 1..1590 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:16 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 2..1597 2..1597 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:12 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 2..1591 1..1590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:25:26 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9114275..9115183 1..909 99 -> Plus
2R 9115239..9115330 910..1001 100 -> Plus
2R 9115384..9115660 1002..1278 100 -> Plus
2R 9115719..9116053 1279..1613 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:25:26 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9114275..9115183 1..909 99 -> Plus
2R 9115239..9115330 910..1001 100 -> Plus
2R 9115384..9115660 1002..1278 100 -> Plus
2R 9115719..9116053 1279..1613 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:25:26 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9114275..9115183 1..909 99 -> Plus
2R 9115239..9115330 910..1001 100 -> Plus
2R 9115384..9115660 1002..1278 100 -> Plus
2R 9115719..9116053 1279..1613 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:49 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5001780..5002688 1..909 99 -> Plus
arm_2R 5002744..5002835 910..1001 100 -> Plus
arm_2R 5002889..5003165 1002..1278 100 -> Plus
arm_2R 5003224..5003558 1279..1613 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:41 Download gff for RH08715.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9116918..9117252 1279..1613 100   Plus
2R 9115474..9116382 1..909 99 -> Plus
2R 9116438..9116529 910..1001 100 -> Plus
2R 9116583..9116859 1002..1278 100 -> Plus

RH08715.pep Sequence

Translation from 419 to 1492

> RH08715.pep
MRRVPPTDAEMQPNRARFKKYNVWASALQEDALSENMRGCDVTRSGRDRN
VENYDFSLRYRLNGENTLKRRLSNSSEDGGECSHPAHKRGRPSSRPITGN
QQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATE
MASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRR
TPGGVFLFLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMRDRKVEE
LKKCLSKQVTELPTLNQRKEYYMQGDEQSEDKQPGSLSNPPPSPVGAEQE
HDSPEYRTHEININLVDNAELPSTSKAAAAAQGAPLKDLISYDHDFLDVN
CGDMDFF*

RH08715.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11956-PA 452 GF11956-PA 96..452 1..357 1499 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23413-PA 453 GG23413-PA 97..453 1..357 1708 93.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19855-PA 473 GH19855-PA 116..473 1..357 1282 72 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-PB 357 CG8069-PB 1..357 1..357 1862 100 Plus
Phax-PA 453 CG8069-PA 97..453 1..357 1862 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19804-PA 468 GI19804-PA 131..468 11..357 1096 68.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17621-PA 462 GL17621-PA 107..462 1..357 1452 80.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24847-PA 462 GA24847-PA 107..462 1..357 1457 80.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21094-PA 453 GM21094-PA 97..453 1..357 1858 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10631-PA 453 GD10631-PA 97..453 1..357 1859 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18465-PA 466 GJ18465-PA 111..466 1..357 1279 72.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22948-PA 452 GK22948-PA 96..452 1..357 1286 74.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19254-PA 453 GE19254-PA 97..453 1..357 1720 93.8 Plus

RH08715.hyp Sequence

Translation from 419 to 1492

> RH08715.hyp
MRRVPPTDAEMQPNRARFKKYNVWASALQEDALSENMRGCDVTRSGRDRN
VENYDFSLRYRLNGENTLKRRLSNSSEDGGECSHPAHKRGRPSSRPITGN
QQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATE
MASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRR
TPGGVFLFLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMRDRKVEE
LKKCLSKQVTELPTLNQRKEYYMQGDEQSEDKQPGSLSNPPPSPVGAEQE
HDSPEYRTHEININLVDNAELPSTSKAAAAAQGAPLKDLISYDHDFLDVN
CGDMDFF*

RH08715.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-PB 357 CG8069-PB 1..357 1..357 1862 100 Plus
Phax-PA 453 CG8069-PA 97..453 1..357 1862 100 Plus