BDGP Sequence Production Resources |
Search the DGRC for RH08870
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 88 |
Well: | 70 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ATPsyn-Cf6-RA |
Protein status: | RH08870.pep: gold |
Preliminary Size: | 532 |
Sequenced Size: | 539 |
Gene | Date | Evidence |
---|---|---|
CG4412 | 2002-10-13 | Blastp of sequenced clone |
CG4412 | 2003-01-01 | Sim4 clustering to Release 3 |
ATPsyn-Cf6 | 2008-04-29 | Release 5.5 accounting |
ATPsyn-Cf6 | 2008-08-15 | Release 5.9 accounting |
ATPsyn-Cf6 | 2008-12-18 | 5.12 accounting |
539 bp (539 high quality bases) assembled on 2002-10-13
GenBank Submission: BT001763
> RH08870.complete GATCACTAACACCAACTGCCATTGTGAACTGACAATTGTAACTTTTCCGC ACGAAAGTTAGCATTTGCAAAGGAAAATAAGATGCTGTCGCAATCCCTGC TGAGTGGCATGCGTGTCCTGCGCACAGAGGCCCGTCGTAACTTCGGAATC GTTGCCCCTGCCCTGAACAAGGCCTCCGATCCCATCCAGCAGCTGTTCCT GGACAAAGTGCGCGAGTACAAGCAGAAGAGCGCCGGTGGCAAGCTGGTGG ACTCCAATCCCGATATTGAGCGGGAGCTGAAGACCGAACTGGACCGTGTG GCCAAGCAGTTTGGCAGCGATGGCAAGACCGACATGCTGAAGTTCCCCGA ATTCCAGTTCCCCGATGTTAAGGTCGATCCCATCACCCAGGCCCCACAGT AGAGATCGCTCTTCGCGAATGAGTTAGTCTAATTGCTTTAAGTTCAGCTG CTGATTTCGCCTGTGCGCCCCCAAAAACCGCGGGCAAGTCAACAAAAAAA ACCAATAAAATCGGGAAAACAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATPsyn-Cf6-RA | 734 | ATPsyn-Cf6-RA | 79..602 | 2..525 | 2620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19178679..19178968 | 523..234 | 1420 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 19179033..19179186 | 233..80 | 770 | 100 | Minus |
chr3R | 27901430 | chr3R | 19179380..19179459 | 81..2 | 400 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23355278..23355569 | 525..234 | 1460 | 100 | Minus |
3R | 32079331 | 3R | 23355634..23355787 | 233..80 | 770 | 100 | Minus |
3R | 32079331 | 3R | 23355981..23356060 | 81..2 | 400 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23096109..23096400 | 525..234 | 1460 | 100 | Minus |
3R | 31820162 | 3R | 23096465..23096618 | 233..80 | 770 | 100 | Minus |
3R | 31820162 | 3R | 23096812..23096891 | 81..2 | 400 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19178679..19178968 | 234..523 | 99 | <- | Minus |
chr3R | 19179033..19179184 | 82..233 | 100 | <- | Minus |
chr3R | 19179380..19179459 | 1..81 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..321 | 82..402 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..321 | 82..402 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..321 | 82..402 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..321 | 82..402 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..321 | 82..402 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..522 | 2..523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..522 | 2..523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 4..526 | 1..523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 1..522 | 2..523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-Cf6-RA | 4..526 | 1..523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23355280..23355569 | 234..523 | 100 | <- | Minus |
3R | 23355634..23355785 | 82..233 | 100 | <- | Minus |
3R | 23355981..23356060 | 1..81 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23355280..23355569 | 234..523 | 100 | <- | Minus |
3R | 23355634..23355785 | 82..233 | 100 | <- | Minus |
3R | 23355981..23356060 | 1..81 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23355280..23355569 | 234..523 | 100 | <- | Minus |
3R | 23355634..23355785 | 82..233 | 100 | <- | Minus |
3R | 23355981..23356060 | 1..81 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19181002..19181291 | 234..523 | 100 | <- | Minus |
arm_3R | 19181356..19181507 | 82..233 | 100 | <- | Minus |
arm_3R | 19181703..19181782 | 1..81 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23096111..23096400 | 234..523 | 100 | <- | Minus |
3R | 23096465..23096616 | 82..233 | 100 | <- | Minus |
3R | 23096812..23096891 | 1..81 | 98 | Minus |
Translation from 81 to 401
> RH08870.hyp MLSQSLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKS AGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDP ITQAPQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATPsyn-Cf6-PB | 106 | CG4412-PB | 1..106 | 1..106 | 534 | 100 | Plus |
ATPsyn-Cf6-PC | 106 | CG4412-PC | 1..106 | 1..106 | 534 | 100 | Plus |
ATPsyn-Cf6-PA | 106 | CG4412-PA | 1..106 | 1..106 | 534 | 100 | Plus |
CG12027-PA | 147 | CG12027-PA | 26..95 | 33..102 | 203 | 54.3 | Plus |
Translation from 81 to 401
> RH08870.pep MLSQSLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKS AGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDP ITQAPQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18010-PA | 106 | GF18010-PA | 1..103 | 1..103 | 471 | 86.4 | Plus |
Dana\GF24705-PA | 153 | GF24705-PA | 13..94 | 18..102 | 154 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12440-PA | 106 | GG12440-PA | 1..106 | 1..106 | 545 | 100 | Plus |
Dere\GG14149-PA | 147 | GG14149-PA | 1..95 | 1..102 | 207 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18020-PA | 106 | GH18020-PA | 1..104 | 1..104 | 476 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATPsynCF6-PB | 106 | CG4412-PB | 1..106 | 1..106 | 534 | 100 | Plus |
ATPsynCF6-PC | 106 | CG4412-PC | 1..106 | 1..106 | 534 | 100 | Plus |
ATPsynCF6-PA | 106 | CG4412-PA | 1..106 | 1..106 | 534 | 100 | Plus |
ATPsynCF6L-PA | 147 | CG12027-PA | 26..95 | 33..102 | 203 | 54.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23616-PA | 106 | GI23616-PA | 1..104 | 1..104 | 478 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13700-PA | 106 | GL13700-PA | 1..104 | 1..104 | 482 | 86.5 | Plus |
Dper\GL13184-PA | 99 | GL13184-PA | 13..96 | 17..102 | 174 | 39.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18167-PA | 106 | GA18167-PA | 1..104 | 1..104 | 482 | 86.5 | Plus |
Dpse\GA11349-PA | 180 | GA11349-PA | 13..96 | 17..102 | 176 | 39.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23571-PA | 106 | GM23571-PA | 1..106 | 1..106 | 541 | 99.1 | Plus |
Dsec\GM13936-PA | 147 | GM13936-PA | 20..95 | 27..102 | 201 | 51.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18388-PA | 106 | GD18388-PA | 1..106 | 1..106 | 541 | 99.1 | Plus |
Dsim\GD13216-PA | 147 | GD13216-PA | 4..95 | 11..102 | 206 | 44.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23589-PA | 106 | GJ23589-PA | 1..104 | 1..104 | 486 | 86.5 | Plus |