Clone RH08992 Report

Search the DGRC for RH08992

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:89
Well:92
Vector:pFlc-1
Associated Gene/TranscriptCG15916-RA
Protein status:RH08992.pep: gold
Preliminary Size:531
Sequenced Size:965

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15916 2002-01-01 Sim4 clustering to Release 2
CG15916 2002-01-09 Blastp of sequenced clone
CG15916 2003-01-01 Sim4 clustering to Release 3
CG15916 2008-04-29 Release 5.5 accounting
CG15916 2008-08-15 Release 5.9 accounting
CG15916 2008-12-18 5.12 accounting

Clone Sequence Records

RH08992.complete Sequence

965 bp (965 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075537

> RH08992.complete
GATTCCACATTATATTTTGTATTGCATTCTATTTTATCTAAGCTAGCAAA
TATATTTAAGGCAACTAGACTAAATGTTAAGCATTCGTGTTTTAAGGCTA
CAAAATGGACACTCCGTTCTTAACAACGCCTGCCAATTGGCACTTTCGCG
AAACAAGAGCTCCAAAAGGTCGAGCAAAGACAACGTAACGCGACAGGGAA
AAATATTTGGCTCGTTGTTTGGAAATCGGCTTAAAGGCAGCAAAAGCCAT
TGGTATCCATCGCCCGATGCAGGAACATCAGGCAATCAAAAGTCGCTGCA
CGCCTTAAAGTTTGGAACCCCACACTCGAAGACAACTTGCAGCCACAACA
ATCGACGCATGTCTGTTCTGAACAAGTTGTTCATGACGAACATCACTGAT
ATTCTGGCCACCGGCGCAGTTGCCGATTCCATCGTGGGACACGGAGTGCA
GATTTCCTATGTCAAGATCACCAGCGACTTCTCCCGCATCAATGTCTATT
GGATGGGCAAGGATGGCGGGGAGAACCAAGAGCTCGAGAACACATTGAAT
CGCATGAGCGGCAAACTGCAGCACGAGCTATCGCAGCTCCATCTGATGGG
CGAAGTGCCAAAGATCAAGTTTGTCCGGGACAAAACGAGCACTGGTCTCC
ATCAGGTCCACGAGGTTCTGTCCAAAATCGATCTTCAGCACAGTTACTCT
AGTTCAAATGCGGAAGTTGAAGAAAGCGACGCACAGAGTTGTCAGACGGC
TGCGGATGAGGAATGGCCGGAGATGCGACAGGATTTCCTCAGTTTTAACC
ATAGCTTAGTTATGGACAAGATTCTCGGCAAGATGCGCAAGTCCAAAGAT
GCCTGGGTTAATCATAGACAAAATATTGCGAAAACCTAACGTTTGTTAAA
TCCCTCGACTTATGTACATAATGTTAATTATTAAAGTGTTATTCAATCCA
AAAAAAAAAAAAAAA

RH08992.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-RA 949 CG15916-RA 2..949 2..949 4740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15780456..15781403 2..949 4740 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:20:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15890600..15891549 2..951 4750 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15898698..15899647 2..951 4750 100 Plus
Blast to na_te.dros performed 2019-03-16 20:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 35..102 20..83 123 71 Plus

RH08992.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:49:20 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15780455..15781403 1..949 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:37 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 1..816 74..889 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:50:48 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 1..816 74..889 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:41 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 1..816 74..889 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:17:18 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 1..816 74..889 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:47 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 1..816 74..889 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:14:34 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 2..949 2..949 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:50:48 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 2..949 2..949 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:41 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 11..959 1..949 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:17:18 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 2..949 2..949 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:47 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 11..959 1..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:20 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
X 15890599..15891547 1..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:20 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
X 15890599..15891547 1..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:20 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
X 15890599..15891547 1..949 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:41 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15784632..15785580 1..949 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:21 Download gff for RH08992.complete
Subject Subject Range Query Range Percent Splice Strand
X 15898697..15899645 1..949 99   Plus

RH08992.pep Sequence

Translation from 73 to 888

> RH08992.pep
MLSIRVLRLQNGHSVLNNACQLALSRNKSSKRSSKDNVTRQGKIFGSLFG
NRLKGSKSHWYPSPDAGTSGNQKSLHALKFGTPHSKTTCSHNNRRMSVLN
KLFMTNITDILATGAVADSIVGHGVQISYVKITSDFSRINVYWMGKDGGE
NQELENTLNRMSGKLQHELSQLHLMGEVPKIKFVRDKTSTGLHQVHEVLS
KIDLQHSYSSSNAEVEESDAQSCQTAADEEWPEMRQDFLSFNHSLVMDKI
LGKMRKSKDAWVNHRQNIAKT*

RH08992.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10091-PA 287 GF10091-PA 1..275 1..271 654 48.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17927-PA 177 GG17927-PA 1..177 96..271 856 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24894-PA 410 GH24894-PA 44..304 37..261 464 41.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-PA 271 CG15916-PA 1..271 1..271 1407 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14290-PA 377 GI14290-PA 16..286 22..266 527 43 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14024-PA 270 GA14024-PA 1..269 1..266 553 45.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22594-PA 271 GM22594-PA 1..271 1..271 1349 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24682-PA 271 GD24682-PA 1..271 1..271 1341 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19347-PA 396 GJ19347-PA 1..294 1..266 581 46.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25240-PA 377 GK25240-PA 32..277 37..264 554 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17234-PA 176 GE17234-PA 1..176 96..271 863 92.6 Plus

RH08992.hyp Sequence

Translation from 73 to 888

> RH08992.hyp
MLSIRVLRLQNGHSVLNNACQLALSRNKSSKRSSKDNVTRQGKIFGSLFG
NRLKGSKSHWYPSPDAGTSGNQKSLHALKFGTPHSKTTCSHNNRRMSVLN
KLFMTNITDILATGAVADSIVGHGVQISYVKITSDFSRINVYWMGKDGGE
NQELENTLNRMSGKLQHELSQLHLMGEVPKIKFVRDKTSTGLHQVHEVLS
KIDLQHSYSSSNAEVEESDAQSCQTAADEEWPEMRQDFLSFNHSLVMDKI
LGKMRKSKDAWVNHRQNIAKT*

RH08992.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-PA 271 CG15916-PA 1..271 1..271 1407 100 Plus