Clone RH09039 Report

Search the DGRC for RH09039

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:90
Well:39
Vector:pFlc-1
Associated Gene/TranscriptCG14591-RA
Protein status:RH09039.pep: gold
Preliminary Size:999
Sequenced Size:1743

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14591 2002-01-01 Sim4 clustering to Release 2
CG14591 2002-01-09 Blastp of sequenced clone
CG14591 2003-01-01 Sim4 clustering to Release 3
CG14591 2008-04-29 Release 5.5 accounting
CG14591 2008-08-15 Release 5.9 accounting
CG14591 2008-12-18 5.12 accounting

Clone Sequence Records

RH09039.complete Sequence

1743 bp (1743 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075538

> RH09039.complete
GAGTCGCTTGCAGACAGTCGCTCAGTGAGAACGTCGCGTTTTTTCGCCAC
CCTTCTTCTTTTCGACCAGCGAATTGCATGCTTAATGCAGACATGCAGTC
GAAATGTAATTAAAAATAAAAAAGGAACAAAGAATGTGCGATGTTCGCGG
GATTTGCTTAATAGCATAAAAAATCCATCGGTGAATCTAGGGGTATCTAA
AGAAGCTTCGGACCAGAACACGTGGCAGTTTCAGGCGGAAGACTTATAGC
CTTAAAATGGGATGGGACTGGGCGGTCGGAGGTATATCCGATGAGATTCC
GAGGACAACGGGACCAGAATGCATCAACTACATGACAGATCGACGTCGCT
GGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTATAATGCACCGC
TCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGCACGAGATACA
GAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCCTTGTCAATGA
TTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTCAATGATTTTC
GCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTTATCTTTTGGC
CGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATACAGATGAGCA
ATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGTGGAGGGCCGC
ACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATGCACTGCTCTA
TATAATACCGATTTACATTATCCGAAGCGGAGCGTACACTGTCGAGGACC
TCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCATGCTGTTTTAT
CACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTATCAATCTGGA
CCACATGCTCTGTGCGGCTATGTCAGATCCGTTCCAGGGCTCGAATTACC
GGATATTTGCGTGCTGCCACCAAGCACTGCTCTGTCCGCTGCTGAGTAAG
GGCACAGTGGTGCTGTTCGGACGCCGGAATCGGAGCAGCAGCGGCCTGAC
CGGATCGGGAAGTATGCCGGAGCCGAGGGGCGAGGCTGCCCAGTATCACC
AATTAACCCAAGGTGACTATGCCATGCAGGAGGAGGCGATATTGCGACAC
CGATTTAGCAACCAGGAAGCGGTGGACGATGGACATCCGCATGACGCAGG
GGAAATGGCGTCCCTTACAGCAGAGTACACCATGCCAACAACCAAGATCG
ACTAGTACTTACTGCGTCTAATATGCATGTCAATTCACGAGCCCCTACGG
CTACGGTCCACGTTTTGCAGATAGCCGCATTGCCCGATCATACTAAAATA
TGAAGGATTTGTGTGAGATCTAAGAGAGGTGAATGTATTTAACAAAGACG
TGTAGATAATAACAAATAAGGCTAATTTTCATGCTCATCGAGGTTATACT
TCTAAACAAAACCAACACCACTCAAGAGTTATCGAGTTATTTCTTACTTC
GAAAAAAATCAAAAGTTACACCACTTCAATGGTTAATAATAGAGTACGTG
TCTTAAATTGTAAGCCTGTAGCGATCAACAGATAAATTCAAAATTCAAAT
CGAGCGCCAAGGGACGGGCAACTCTAAAGGTCTATGTTCGGTCTGGCAGC
ACTGTCCGAGTGAACTGTGACCCGTTTATCTGCAGCTGTTGGTGAATCTT
GAAATAAATAATAAATAGTCGAAACGGAAAAAAAAAAAAAAAA

RH09039.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-RA 1732 CG14591-RA 7..1732 2..1727 8630 100 Plus
CG14591-RB 1876 CG14591-RB 305..1784 248..1727 7400 100 Plus
CG14591.a 1644 CG14591.a 148..1627 248..1727 7400 100 Plus
CG14591-RB 1876 CG14591-RB 20..267 2..249 1240 100 Plus
CG14591.a 1644 CG14591.a 7..110 2..105 520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1923728..1924574 1727..881 4160 99.4 Minus
chr2R 21145070 chr2R 1925241..1925579 586..248 1695 100 Minus
chr2R 21145070 chr2R 1927247..1927488 249..2 1080 97.6 Minus
chr2R 21145070 chr2R 1924987..1925183 780..584 985 100 Minus
chr2R 21145070 chr2R 1924831..1924932 880..779 510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:20:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6036558..6037404 1727..881 4235 100 Minus
2R 25286936 2R 6038071..6038409 586..248 1695 100 Minus
2R 25286936 2R 6040082..6040329 249..2 1240 100 Minus
2R 25286936 2R 6037817..6038013 780..584 985 100 Minus
2R 25286936 2R 6037661..6037762 880..779 510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6037757..6038603 1727..881 4235 100 Minus
2R 25260384 2R 6039270..6039608 586..248 1695 100 Minus
2R 25260384 2R 6041281..6041528 249..2 1240 100 Minus
2R 25260384 2R 6039016..6039212 780..584 985 100 Minus
2R 25260384 2R 6038860..6038961 880..779 510 100 Minus
Blast to na_te.dros performed 2019-03-16 19:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 52..163 1600..1489 145 63.5 Minus

RH09039.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:47:32 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1927247..1927488 1..249 97   Minus
chr2R 1923728..1924574 881..1727 99 <- Minus
chr2R 1924831..1924931 780..880 100 <- Minus
chr2R 1924988..1925180 587..779 100 <- Minus
chr2R 1925241..1925577 250..586 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:38 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 1..999 257..1255 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:50:51 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RC 1..999 257..1255 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:58 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 1..999 257..1255 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:17:19 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 1..999 257..1255 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:56 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 1..999 257..1255 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:14:36 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RA 6..1732 1..1727 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:50:50 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RA 6..1732 1..1727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:58 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RA 5..1731 1..1727 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:17:19 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RA 6..1732 1..1727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:56 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RA 5..1731 1..1727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:32 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6036558..6037404 881..1727 100 <- Minus
2R 6037661..6037761 780..880 100 <- Minus
2R 6037818..6038010 587..779 100 <- Minus
2R 6038071..6038407 250..586 100 <- Minus
2R 6040082..6040329 1..249 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:32 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6036558..6037404 881..1727 100 <- Minus
2R 6037661..6037761 780..880 100 <- Minus
2R 6037818..6038010 587..779 100 <- Minus
2R 6038071..6038407 250..586 100 <- Minus
2R 6040082..6040329 1..249 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:32 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6036558..6037404 881..1727 100 <- Minus
2R 6037661..6037761 780..880 100 <- Minus
2R 6037818..6038010 587..779 100 <- Minus
2R 6038071..6038407 250..586 100 <- Minus
2R 6040082..6040329 1..249 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:58 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1924063..1924909 881..1727 100 <- Minus
arm_2R 1925166..1925266 780..880 100 <- Minus
arm_2R 1925323..1925515 587..779 100 <- Minus
arm_2R 1925576..1925912 250..586 100 <- Minus
arm_2R 1927587..1927834 1..249 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:22 Download gff for RH09039.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6037757..6038603 881..1727 100 <- Minus
2R 6038860..6038960 780..880 100 <- Minus
2R 6039017..6039209 587..779 100 <- Minus
2R 6039270..6039606 250..586 100 <- Minus
2R 6041281..6041528 1..249 99   Minus

RH09039.pep Sequence

Translation from 256 to 1254

> RH09039.pep
MGWDWAVGGISDEIPRTTGPECINYMTDRRRWLETILLSALFIFIMHRSW
QRLAPIKLPPPHEIQKPHSPTRLFLLIALSMIFGIEMGFKLSGQSMIFAL
NPCHVQSCLQIYLLAAKPTKTTTALFRIQMSNLNGPFLAFLFPEVEGRTY
PFEQATYWIQHALLYIIPIYIIRSGAYTVEDLSEFHWSHIGTAFMLFYHF
ILLSPLSIFTGINLDHMLCAAMSDPFQGSNYRIFACCHQALLCPLLSKGT
VVLFGRRNRSSSGLTGSGSMPEPRGEAAQYHQLTQGDYAMQEEAILRHRF
SNQEAVDDGHPHDAGEMASLTAEYTMPTTKID*

RH09039.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13824-PA 341 GF13824-PA 1..341 1..332 1374 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10837-PA 332 GG10837-PA 1..332 1..332 1620 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22818-PA 325 GH22818-PA 1..325 1..332 1234 69.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-PD 332 CG14591-PD 1..332 1..332 1773 100 Plus
CG14591-PC 332 CG14591-PC 1..332 1..332 1773 100 Plus
CG14591-PB 332 CG14591-PB 1..332 1..332 1773 100 Plus
CG14591-PA 332 CG14591-PA 1..332 1..332 1773 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21194-PA 330 GI21194-PA 1..330 1..332 1248 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17784-PA 349 GL17784-PA 5..349 3..332 1393 76.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13101-PA 349 GA13101-PA 5..349 3..332 1393 76.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16487-PA 332 GM16487-PA 1..332 1..332 1727 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10339-PA 332 GD10339-PA 1..332 1..332 1731 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20798-PA 314 GJ20798-PA 1..314 1..332 1264 72.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22003-PA 329 GK22003-PA 1..329 1..332 1310 73.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19431-PA 332 GE19431-PA 1..332 1..332 1587 91.9 Plus

RH09039.hyp Sequence

Translation from 256 to 1254

> RH09039.hyp
MGWDWAVGGISDEIPRTTGPECINYMTDRRRWLETILLSALFIFIMHRSW
QRLAPIKLPPPHEIQKPHSPTRLFLLIALSMIFGIEMGFKLSGQSMIFAL
NPCHVQSCLQIYLLAAKPTKTTTALFRIQMSNLNGPFLAFLFPEVEGRTY
PFEQATYWIQHALLYIIPIYIIRSGAYTVEDLSEFHWSHIGTAFMLFYHF
ILLSPLSIFTGINLDHMLCAAMSDPFQGSNYRIFACCHQALLCPLLSKGT
VVLFGRRNRSSSGLTGSGSMPEPRGEAAQYHQLTQGDYAMQEEAILRHRF
SNQEAVDDGHPHDAGEMASLTAEYTMPTTKID*

RH09039.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-PD 332 CG14591-PD 1..332 1..332 1773 100 Plus
CG14591-PC 332 CG14591-PC 1..332 1..332 1773 100 Plus
CG14591-PB 332 CG14591-PB 1..332 1..332 1773 100 Plus
CG14591-PA 332 CG14591-PA 1..332 1..332 1773 100 Plus