BDGP Sequence Production Resources |
Search the DGRC for RH09294
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 92 |
Well: | 94 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Neurochondrin-RA |
Protein status: | RH09294.pep: gold |
Preliminary Size: | 2287 |
Sequenced Size: | 2623 |
Gene | Date | Evidence |
---|---|---|
CG2330 | 2007-09-25 | DGC5 pick |
Neurochondrin | 2008-04-29 | Picked prior to 5.5 |
Neurochondrin | 2008-08-15 | Release 5.9 accounting |
Neurochondrin | 2008-12-18 | 5.12 accounting |
2623 bp assembled on 2008-05-22
GenBank Submission: BT033014
> RH09294.complete GACTCGCGAGTTTTCCGCTGGCGACGATCAGTGTGCGAGAGTGCGTCGAC GAGCGAGGACACAGAACCAGAAGCCAAGAAAATCAGCGGAAAACGTATCC GGCGGGAGAAGAACCAACGGGAAAGCTGCAGCCAAGTGAAAGTGTGGGGA GATATTAATAGAAGGCCACGTCGCACACATATATCCGAGCAGCGGATAAA TATACAGACCGTTCATAGGCGGTCCGTGAGATACACACCCGGAGGAGAGA CGGAAACCAGGATGACGGACGTGCCGGAGCCCGTGCGCAAGTGCGCCAGC CTGTTGAAGGGCACGAAGAGCGACACTGAAAAATTCGCCGCCCTCTTTAT GGTCACCAAGCTGGTCAAGGGCAAGGACTGCAATGCGGCGGGCAAGAAGC TGCTGTTCGAGGCCATAGGGTTTCCCTTCCTCAAGAAGCTGCTAGTGTCC AAGGATCTGCCCAACGATTGTCCGCCGTTAGTTTACAAGAGTGTAGCTCT CTCGATCCTCACGTGCTTTTGCCAGGAGGAGGAGTTAGCCACCCATAAGG ACATCATCGACGCCATACCCACGCTCCTGGAAATCGTTGAGCAGGCCGAT GACGAGGACTACGAGGATAACCTAATCGTGGTCAGCGAGGCGTATAGTTG CCTCAAGAGCATCGCCAGCCATGAGCCAGGCCAGCAGGCCCTTCTGGCCA CCGGAGCCATCCCCAAGATGTCGCAGATATACTCCGCCCAGAGTTTCCAG ACCGATGAGGCCTTGCACCTGATCGTGCTGCTTGTTAAGCAGTTTGGAGT GGTATCATGGCCCGAGGATCCCACTGCCTTCCATGCTCTGATCCAGAGGA TCGCTTTGGACATGGAAACCGATGACACGGAGAGAAAGTACGAGCTCTGC CGTATCTTGGCTGATATCCTTATTACCTGCCGTCGTGAGATTGTGATTAA TTCTCTGGAGGGTCAGATCTGGCCGGAGAGCTTGTTCAAGGGCTGTGGAG ATATTCTGAAGGCCAAGATTGGCCCCAAGCAAAGGGATCCTGCACTGCAT CTAATAGCCACCACCTTGCATGTGCTGGGCATCCAATGGGCCTTCATGGA CGAGCAGAAGACTTTCTTCCTGCAGCTCCTCCAACTGGGAGCTATCGAGG TGCGCATGCAAATGGATGAGAAAAAACTGGAAACCACCTTCAAGCAGGCG GAGCTGCTCACCTGCTGCTTCTCCATTCTGGAGCATTGCATTGAGTATAT GGCTACGGATCAGCTGGATCTAGAGCCCAAGGAGAAACAGACCACTTACA CCGCTCTCAAGGGCGCCTTCAACCAGGTTCTGGCGGTTTTGACCCGTGTT AGCCAGGACAAGATCAGGGAAAGCTCTAATCCCAAAGATAAGAAGTTTGT GTTTGCCATCGTGAAAGTTCTGTCCGCCTGGCTAGCCCAGGAGACAACGG CCATGAGACCGGCCATCTACAAGCTTCTGCCCTTCATGCTCAAGGTGGCC AACGAGAGTTTCCAGGAGCTAAAGACCTGGAGGGCAGGAACTAGGGAGGG CGAACCACCCATCGATGTTCTGCGGATCATGCTTCCGGCTCTCTGCCATT TCGCAGTGGAGGAGGAGGCCAGGAGAGTGCTCTTCACCCATAAGCAGGAT GAAGTGCTGCTGGAATCCTTGGAGTTCTACTTCAGCATTGCCCATTGGAA GAGGCCGCCAATACCGCGCGCTGAGCGTTTGAAGCGCATGAATGAGCCCG ATCCGGTTCCGACTCCGGAGCAGCAGGCGGAGATGAAGGTGGCCAGAAGT GCCATAGTGGCGCTCTGCAACATTTTGATGAACTTCACCGTCTTGGAGCC GAAGAAGGCTGAGGATGGACCGACTTTCGCCAATCTGCTGAAGTTCGTGG TGGAGAATCTACCCGAACTGAAGGATACGCCCGATAACCTGGTCATCCAC GGAAACCTGGCTGTGCTGGGCCTTCTACTGCTTAAGCAGCAGTCCAAGAA GGTGAAGCAGAATGACTTCTCCATCTGTCGCTACATCCAGGCCACCATCC GCTTCCTCTGGGATGCCTACAACATCGATGAGAGCAACGATCCCACCGCT CTGGTGGTGTCCATTGCCTACAAGGGCTACTGGTCGGATCTGTCGGAGCT CTGGTTCCTGGGAATGCAGACCATGTGCGGCGTGCTACCCCTGGTGCCAT GGCTCTCCGAGTTCGCCCTGGAGTCCGGCTGGGCAGAGGGCATTGTGAAG ACCCTGAAAAAGGTCAAGATCGGCACCCTGCCGGCTAACGTTAAATCCGC GTACGAGGACTTCCTGTCCCAACTGGTGGACGTGAACGGCGATGTCCAGG CCGTGCTCAAGAAGGCCGATGCTCTGCGGGTCTGCCGCAATCACAGGATG ATGGATCTGGGCAAGAAGCTCTTCGGCGACTAAGCCAAGCAAGGCACTCA CTGTTTCTCTAGAGGCATTTTTTGTGTGTGATTTGTGCGCCAGCGAAAAA TGGAAAATATTTTGTATGGATTATATTCTATTTTATATGCTCTATTTTAA TGACTAAATACCTAAATTTATAAAAAAAAAAATAATAAACCAATTTTAAA AACACAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Neurochondrin-RA | 2606 | Neurochondrin-RA | 2..2606 | 2..2606 | 13025 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 2294139..2296745 | 2..2606 | 12940 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 6468413..6471017 | 2..2606 | 13025 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 6209244..6211848 | 2..2606 | 13025 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3834..3901 | 820..752 | 117 | 65.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2294138..2296745 | 1..2607 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 1..2172 | 262..2433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 1..2172 | 262..2433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 1..2172 | 262..2433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 1..2172 | 262..2433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 1..2172 | 262..2433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 2..2606 | 2..2606 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 2..2606 | 2..2606 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 1..2580 | 26..2605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 2..2606 | 2..2606 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neurochondrin-RA | 1..2580 | 26..2605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6468412..6471017 | 1..2607 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6468412..6471017 | 1..2607 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6468412..6471017 | 1..2607 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2294134..2296739 | 1..2607 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6209243..6211848 | 1..2607 | 99 | Plus |
Translation from 0 to 2432
> RH09294.pep DSRVFRWRRSVCESASTSEDTEPEAKKISGKRIRREKNQRESCSQVKVWG DINRRPRRTHISEQRINIQTVHRRSVRYTPGGETETRMTDVPEPVRKCAS LLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFEAIGFPFLKKLLVS KDLPNDCPPLVYKSVALSILTCFCQEEELATHKDIIDAIPTLLEIVEQAD DEDYEDNLIVVSEAYSCLKSIASHEPGQQALLATGAIPKMSQIYSAQSFQ TDEALHLIVLLVKQFGVVSWPEDPTAFHALIQRIALDMETDDTERKYELC RILADILITCRREIVINSLEGQIWPESLFKGCGDILKAKIGPKQRDPALH LIATTLHVLGIQWAFMDEQKTFFLQLLQLGAIEVRMQMDEKKLETTFKQA ELLTCCFSILEHCIEYMATDQLDLEPKEKQTTYTALKGAFNQVLAVLTRV SQDKIRESSNPKDKKFVFAIVKVLSAWLAQETTAMRPAIYKLLPFMLKVA NESFQELKTWRAGTREGEPPIDVLRIMLPALCHFAVEEEARRVLFTHKQD EVLLESLEFYFSIAHWKRPPIPRAERLKRMNEPDPVPTPEQQAEMKVARS AIVALCNILMNFTVLEPKKAEDGPTFANLLKFVVENLPELKDTPDNLVIH GNLAVLGLLLLKQQSKKVKQNDFSICRYIQATIRFLWDAYNIDESNDPTA LVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVK TLKKVKIGTLPANVKSAYEDFLSQLVDVNGDVQAVLKKADALRVCRNHRM MDLGKKLFGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18365-PA | 723 | GF18365-PA | 1..723 | 88..810 | 3632 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13468-PA | 723 | GG13468-PA | 1..723 | 88..810 | 3818 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15609-PA | 723 | GH15609-PA | 1..723 | 88..810 | 3514 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Neurochondrin-PA | 723 | CG2330-PA | 1..723 | 88..810 | 3727 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22483-PA | 723 | GI22483-PA | 1..723 | 88..810 | 3521 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21752-PA | 723 | GL21752-PA | 1..723 | 88..810 | 3561 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15350-PA | 723 | GA15350-PA | 1..723 | 88..810 | 3568 | 93.2 | Plus |
Dpse\GA27812-PA | 170 | GA27812-PA | 93..170 | 221..299 | 159 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10898-PA | 723 | GM10898-PA | 1..723 | 88..810 | 3829 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19877-PA | 723 | GD19877-PA | 1..723 | 88..810 | 3834 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10082-PA | 723 | GJ10082-PA | 1..723 | 88..810 | 3495 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11575-PA | 723 | GK11575-PA | 1..723 | 88..810 | 3531 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10223-PA | 723 | GE10223-PA | 1..723 | 88..810 | 3802 | 98.6 | Plus |
Translation from 0 to 2432
> RH09294.hyp HSRVFRWRRSVCESASTSEDTEPEAKKISGKRIRREKNQRESCSQVKVWG DINRRPRRTHISEQRINIQTVHRRSVRYTPGGETETRMTDVPEPVRKCAS LLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFEAIGFPFLKKLLVS KDLPNDCPPLVYKSVALSILTCFCQEEELATHKDIIDAIPTLLEIVEQAD DEDYEDNLIVVSEAYSCLKSIASHEPGQQALLATGAIPKMSQIYSAQSFQ TDEALHLIVLLVKQFGVVSWPEDPTAFHALIQRIALDMETDDTERKYELC RILADILITCRREIVINSLEGQIWPESLFKGCGDILKAKIGPKQRDPALH LIATTLHVLGIQWAFMDEQKTFFLQLLQLGAIEVRMQMDEKKLETTFKQA ELLTCCFSILEHCIEYMATDQLDLEPKEKQTTYTALKGAFNQVLAVLTRV SQDKIRESSNPKDKKFVFAIVKVLSAWLAQETTAMRPAIYKLLPFMLKVA NESFQELKTWRAGTREGEPPIDVLRIMLPALCHFAVEEEARRVLFTHKQD EVLLESLEFYFSIAHWKRPPIPRAERLKRMNEPDPVPTPEQQAEMKVARS AIVALCNILMNFTVLEPKKAEDGPTFANLLKFVVENLPELKDTPDNLVIH GNLAVLGLLLLKQQSKKVKQNDFSICRYIQATIRFLWDAYNIDESNDPTA LVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVK TLKKVKIGTLPANVKSAYEDFLSQLVDVNGDVQAVLKKADALRVCRNHRM MDLGKKLFGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Neurochondrin-PA | 723 | CG2330-PA | 1..723 | 88..810 | 3727 | 100 | Plus |