Clone RH09294 Report

Search the DGRC for RH09294

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:92
Well:94
Vector:pFlc-1
Associated Gene/TranscriptNeurochondrin-RA
Protein status:RH09294.pep: gold
Preliminary Size:2287
Sequenced Size:2623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2330 2007-09-25 DGC5 pick
Neurochondrin 2008-04-29 Picked prior to 5.5
Neurochondrin 2008-08-15 Release 5.9 accounting
Neurochondrin 2008-12-18 5.12 accounting

Clone Sequence Records

RH09294.complete Sequence

2623 bp assembled on 2008-05-22

GenBank Submission: BT033014

> RH09294.complete
GACTCGCGAGTTTTCCGCTGGCGACGATCAGTGTGCGAGAGTGCGTCGAC
GAGCGAGGACACAGAACCAGAAGCCAAGAAAATCAGCGGAAAACGTATCC
GGCGGGAGAAGAACCAACGGGAAAGCTGCAGCCAAGTGAAAGTGTGGGGA
GATATTAATAGAAGGCCACGTCGCACACATATATCCGAGCAGCGGATAAA
TATACAGACCGTTCATAGGCGGTCCGTGAGATACACACCCGGAGGAGAGA
CGGAAACCAGGATGACGGACGTGCCGGAGCCCGTGCGCAAGTGCGCCAGC
CTGTTGAAGGGCACGAAGAGCGACACTGAAAAATTCGCCGCCCTCTTTAT
GGTCACCAAGCTGGTCAAGGGCAAGGACTGCAATGCGGCGGGCAAGAAGC
TGCTGTTCGAGGCCATAGGGTTTCCCTTCCTCAAGAAGCTGCTAGTGTCC
AAGGATCTGCCCAACGATTGTCCGCCGTTAGTTTACAAGAGTGTAGCTCT
CTCGATCCTCACGTGCTTTTGCCAGGAGGAGGAGTTAGCCACCCATAAGG
ACATCATCGACGCCATACCCACGCTCCTGGAAATCGTTGAGCAGGCCGAT
GACGAGGACTACGAGGATAACCTAATCGTGGTCAGCGAGGCGTATAGTTG
CCTCAAGAGCATCGCCAGCCATGAGCCAGGCCAGCAGGCCCTTCTGGCCA
CCGGAGCCATCCCCAAGATGTCGCAGATATACTCCGCCCAGAGTTTCCAG
ACCGATGAGGCCTTGCACCTGATCGTGCTGCTTGTTAAGCAGTTTGGAGT
GGTATCATGGCCCGAGGATCCCACTGCCTTCCATGCTCTGATCCAGAGGA
TCGCTTTGGACATGGAAACCGATGACACGGAGAGAAAGTACGAGCTCTGC
CGTATCTTGGCTGATATCCTTATTACCTGCCGTCGTGAGATTGTGATTAA
TTCTCTGGAGGGTCAGATCTGGCCGGAGAGCTTGTTCAAGGGCTGTGGAG
ATATTCTGAAGGCCAAGATTGGCCCCAAGCAAAGGGATCCTGCACTGCAT
CTAATAGCCACCACCTTGCATGTGCTGGGCATCCAATGGGCCTTCATGGA
CGAGCAGAAGACTTTCTTCCTGCAGCTCCTCCAACTGGGAGCTATCGAGG
TGCGCATGCAAATGGATGAGAAAAAACTGGAAACCACCTTCAAGCAGGCG
GAGCTGCTCACCTGCTGCTTCTCCATTCTGGAGCATTGCATTGAGTATAT
GGCTACGGATCAGCTGGATCTAGAGCCCAAGGAGAAACAGACCACTTACA
CCGCTCTCAAGGGCGCCTTCAACCAGGTTCTGGCGGTTTTGACCCGTGTT
AGCCAGGACAAGATCAGGGAAAGCTCTAATCCCAAAGATAAGAAGTTTGT
GTTTGCCATCGTGAAAGTTCTGTCCGCCTGGCTAGCCCAGGAGACAACGG
CCATGAGACCGGCCATCTACAAGCTTCTGCCCTTCATGCTCAAGGTGGCC
AACGAGAGTTTCCAGGAGCTAAAGACCTGGAGGGCAGGAACTAGGGAGGG
CGAACCACCCATCGATGTTCTGCGGATCATGCTTCCGGCTCTCTGCCATT
TCGCAGTGGAGGAGGAGGCCAGGAGAGTGCTCTTCACCCATAAGCAGGAT
GAAGTGCTGCTGGAATCCTTGGAGTTCTACTTCAGCATTGCCCATTGGAA
GAGGCCGCCAATACCGCGCGCTGAGCGTTTGAAGCGCATGAATGAGCCCG
ATCCGGTTCCGACTCCGGAGCAGCAGGCGGAGATGAAGGTGGCCAGAAGT
GCCATAGTGGCGCTCTGCAACATTTTGATGAACTTCACCGTCTTGGAGCC
GAAGAAGGCTGAGGATGGACCGACTTTCGCCAATCTGCTGAAGTTCGTGG
TGGAGAATCTACCCGAACTGAAGGATACGCCCGATAACCTGGTCATCCAC
GGAAACCTGGCTGTGCTGGGCCTTCTACTGCTTAAGCAGCAGTCCAAGAA
GGTGAAGCAGAATGACTTCTCCATCTGTCGCTACATCCAGGCCACCATCC
GCTTCCTCTGGGATGCCTACAACATCGATGAGAGCAACGATCCCACCGCT
CTGGTGGTGTCCATTGCCTACAAGGGCTACTGGTCGGATCTGTCGGAGCT
CTGGTTCCTGGGAATGCAGACCATGTGCGGCGTGCTACCCCTGGTGCCAT
GGCTCTCCGAGTTCGCCCTGGAGTCCGGCTGGGCAGAGGGCATTGTGAAG
ACCCTGAAAAAGGTCAAGATCGGCACCCTGCCGGCTAACGTTAAATCCGC
GTACGAGGACTTCCTGTCCCAACTGGTGGACGTGAACGGCGATGTCCAGG
CCGTGCTCAAGAAGGCCGATGCTCTGCGGGTCTGCCGCAATCACAGGATG
ATGGATCTGGGCAAGAAGCTCTTCGGCGACTAAGCCAAGCAAGGCACTCA
CTGTTTCTCTAGAGGCATTTTTTGTGTGTGATTTGTGCGCCAGCGAAAAA
TGGAAAATATTTTGTATGGATTATATTCTATTTTATATGCTCTATTTTAA
TGACTAAATACCTAAATTTATAAAAAAAAAAATAATAAACCAATTTTAAA
AACACAGAAAAAAAAAAAAAAAA

RH09294.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Neurochondrin-RA 2606 Neurochondrin-RA 2..2606 2..2606 13025 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2294139..2296745 2..2606 12940 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6468413..6471017 2..2606 13025 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6209244..6211848 2..2606 13025 100 Plus
Blast to na_te.dros performed 2019-03-16 09:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3834..3901 820..752 117 65.2 Minus

RH09294.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:16:26 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2294138..2296745 1..2607 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:47 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 1..2172 262..2433 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:37:46 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 1..2172 262..2433 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:59:51 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 1..2172 262..2433 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:43:30 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 1..2172 262..2433 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:31 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 1..2172 262..2433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:06:56 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 2..2606 2..2606 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:37:46 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 2..2606 2..2606 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:59:51 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 1..2580 26..2605 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:43:31 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 2..2606 2..2606 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:31 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
Neurochondrin-RA 1..2580 26..2605 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:26 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6468412..6471017 1..2607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:26 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6468412..6471017 1..2607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:26 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6468412..6471017 1..2607 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:59:51 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2294134..2296739 1..2607 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:20:38 Download gff for RH09294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6209243..6211848 1..2607 99   Plus

RH09294.pep Sequence

Translation from 0 to 2432

> RH09294.pep
DSRVFRWRRSVCESASTSEDTEPEAKKISGKRIRREKNQRESCSQVKVWG
DINRRPRRTHISEQRINIQTVHRRSVRYTPGGETETRMTDVPEPVRKCAS
LLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFEAIGFPFLKKLLVS
KDLPNDCPPLVYKSVALSILTCFCQEEELATHKDIIDAIPTLLEIVEQAD
DEDYEDNLIVVSEAYSCLKSIASHEPGQQALLATGAIPKMSQIYSAQSFQ
TDEALHLIVLLVKQFGVVSWPEDPTAFHALIQRIALDMETDDTERKYELC
RILADILITCRREIVINSLEGQIWPESLFKGCGDILKAKIGPKQRDPALH
LIATTLHVLGIQWAFMDEQKTFFLQLLQLGAIEVRMQMDEKKLETTFKQA
ELLTCCFSILEHCIEYMATDQLDLEPKEKQTTYTALKGAFNQVLAVLTRV
SQDKIRESSNPKDKKFVFAIVKVLSAWLAQETTAMRPAIYKLLPFMLKVA
NESFQELKTWRAGTREGEPPIDVLRIMLPALCHFAVEEEARRVLFTHKQD
EVLLESLEFYFSIAHWKRPPIPRAERLKRMNEPDPVPTPEQQAEMKVARS
AIVALCNILMNFTVLEPKKAEDGPTFANLLKFVVENLPELKDTPDNLVIH
GNLAVLGLLLLKQQSKKVKQNDFSICRYIQATIRFLWDAYNIDESNDPTA
LVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVK
TLKKVKIGTLPANVKSAYEDFLSQLVDVNGDVQAVLKKADALRVCRNHRM
MDLGKKLFGD*

RH09294.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18365-PA 723 GF18365-PA 1..723 88..810 3632 95 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13468-PA 723 GG13468-PA 1..723 88..810 3818 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15609-PA 723 GH15609-PA 1..723 88..810 3514 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
Neurochondrin-PA 723 CG2330-PA 1..723 88..810 3727 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22483-PA 723 GI22483-PA 1..723 88..810 3521 92.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21752-PA 723 GL21752-PA 1..723 88..810 3561 93.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15350-PA 723 GA15350-PA 1..723 88..810 3568 93.2 Plus
Dpse\GA27812-PA 170 GA27812-PA 93..170 221..299 159 46 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10898-PA 723 GM10898-PA 1..723 88..810 3829 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19877-PA 723 GD19877-PA 1..723 88..810 3834 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10082-PA 723 GJ10082-PA 1..723 88..810 3495 91.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11575-PA 723 GK11575-PA 1..723 88..810 3531 93.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10223-PA 723 GE10223-PA 1..723 88..810 3802 98.6 Plus

RH09294.hyp Sequence

Translation from 0 to 2432

> RH09294.hyp
HSRVFRWRRSVCESASTSEDTEPEAKKISGKRIRREKNQRESCSQVKVWG
DINRRPRRTHISEQRINIQTVHRRSVRYTPGGETETRMTDVPEPVRKCAS
LLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFEAIGFPFLKKLLVS
KDLPNDCPPLVYKSVALSILTCFCQEEELATHKDIIDAIPTLLEIVEQAD
DEDYEDNLIVVSEAYSCLKSIASHEPGQQALLATGAIPKMSQIYSAQSFQ
TDEALHLIVLLVKQFGVVSWPEDPTAFHALIQRIALDMETDDTERKYELC
RILADILITCRREIVINSLEGQIWPESLFKGCGDILKAKIGPKQRDPALH
LIATTLHVLGIQWAFMDEQKTFFLQLLQLGAIEVRMQMDEKKLETTFKQA
ELLTCCFSILEHCIEYMATDQLDLEPKEKQTTYTALKGAFNQVLAVLTRV
SQDKIRESSNPKDKKFVFAIVKVLSAWLAQETTAMRPAIYKLLPFMLKVA
NESFQELKTWRAGTREGEPPIDVLRIMLPALCHFAVEEEARRVLFTHKQD
EVLLESLEFYFSIAHWKRPPIPRAERLKRMNEPDPVPTPEQQAEMKVARS
AIVALCNILMNFTVLEPKKAEDGPTFANLLKFVVENLPELKDTPDNLVIH
GNLAVLGLLLLKQQSKKVKQNDFSICRYIQATIRFLWDAYNIDESNDPTA
LVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVK
TLKKVKIGTLPANVKSAYEDFLSQLVDVNGDVQAVLKKADALRVCRNHRM
MDLGKKLFGD*

RH09294.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Neurochondrin-PA 723 CG2330-PA 1..723 88..810 3727 100 Plus