BDGP Sequence Production Resources |
Search the DGRC for RH09340
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 93 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13565-RA |
Protein status: | RH09340.pep: gold |
Preliminary Size: | 303 |
Sequenced Size: | 608 |
Gene | Date | Evidence |
---|---|---|
CG13565 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13565 | 2002-04-26 | Blastp of sequenced clone |
CG13565 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13565 | 2008-04-29 | Release 5.5 accounting |
CG13565 | 2008-08-15 | Release 5.9 accounting |
CG13565 | 2008-12-18 | 5.12 accounting |
608 bp (608 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113565
> RH09340.complete GACAGTCATCTTCAAATCGCTCCCAAGTGCACCAGGCTAACGGTCAACGG CTGGAATCATGAATCTATATGTGCTCCTGGCGGTGGTATCGGTGTTCCTG AACTTCATTCACGCAGCGCCCGGTGTGGATATTTCCAACGACGAACTGCT GGATGGAAAATATCTTTGTGAAGCTGGCTCGAAGAAGTACGATGGACCGT TTATAGTGAGATTGATTTCGGCTGCCAATGGACAAACGGTCGTCTGCTAC GAGTGCAGCCAGTCGGAGTTCAAGACGAAGTACTCGGTGAAGCAGTGCGC GGCCGGCAAGATCGGGTCTGGCCATCACCGGGACCTGGTGCCCTACCTGG TGAGGATGGACCCCCTGTACAAGGACACCTGGAGCAGTAAGCTCAAGCGG AACTTCGACGAGATCGACAAGGCCTCCGCCAGCTTCAGCATCCTCAACCA GCTCGTCTAGTGATACCTTCGACAGCGCGTGAATGTAAATGCCCATGGAT ATGGATACGGACTCTGATAGCGGAAATACTCTAAAATGCTTCATGTCAAG GGACTATAGAAAATAAAGCAGGTGCATCCTGGTAGAATAGCCAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13565-RA | 683 | CG13565-RA | 76..670 | 2..596 | 2975 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19833024..19833407 | 592..209 | 1875 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 19834553..19834679 | 128..2 | 635 | 100 | Minus |
chr2R | 21145070 | chr2R | 19834417..19834463 | 173..127 | 235 | 100 | Minus |
chr2R | 21145070 | chr2R | 19833681..19833720 | 210..171 | 200 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23946955..23947342 | 596..209 | 1940 | 100 | Minus |
2R | 25286936 | 2R | 23948488..23948614 | 128..2 | 635 | 100 | Minus |
2R | 25286936 | 2R | 23948352..23948398 | 173..127 | 235 | 100 | Minus |
2R | 25286936 | 2R | 23947616..23947655 | 210..171 | 200 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23948154..23948541 | 596..209 | 1940 | 100 | Minus |
2R | 25260384 | 2R | 23949687..23949813 | 128..2 | 635 | 100 | Minus |
2R | 25260384 | 2R | 23949551..23949597 | 173..127 | 235 | 100 | Minus |
2R | 25260384 | 2R | 23948815..23948854 | 210..171 | 200 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G2 | 3102 | G2 G2 3102bp | 2138..2223 | 395..480 | 105 | 60.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19833024..19833405 | 211..592 | 99 | <- | Minus |
chr2R | 19833681..19833717 | 174..210 | 100 | <- | Minus |
chr2R | 19834417..19834462 | 128..173 | 100 | <- | Minus |
chr2R | 19834554..19834679 | 1..127 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..402 | 59..460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..402 | 59..460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..402 | 59..460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..402 | 59..460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..402 | 59..460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..591 | 2..592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..591 | 2..592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..593 | 1..592 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..591 | 2..592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13565-RA | 1..593 | 1..592 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23946959..23947340 | 211..592 | 100 | <- | Minus |
2R | 23947616..23947652 | 174..210 | 100 | <- | Minus |
2R | 23948352..23948397 | 128..173 | 100 | <- | Minus |
2R | 23948489..23948614 | 1..127 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23946959..23947340 | 211..592 | 100 | <- | Minus |
2R | 23947616..23947652 | 174..210 | 100 | <- | Minus |
2R | 23948352..23948397 | 128..173 | 100 | <- | Minus |
2R | 23948489..23948614 | 1..127 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23946959..23947340 | 211..592 | 100 | <- | Minus |
2R | 23947616..23947652 | 174..210 | 100 | <- | Minus |
2R | 23948352..23948397 | 128..173 | 100 | <- | Minus |
2R | 23948489..23948614 | 1..127 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19834482..19834863 | 211..592 | 100 | <- | Minus |
arm_2R | 19835139..19835175 | 174..210 | 100 | <- | Minus |
arm_2R | 19835875..19835920 | 128..173 | 100 | <- | Minus |
arm_2R | 19836012..19836137 | 1..127 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23948176..23948557 | 211..592 | 100 | <- | Minus |
2R | 23948833..23948869 | 174..210 | 100 | <- | Minus |
2R | 23949569..23949614 | 128..173 | 100 | <- | Minus |
2R | 23949706..23949831 | 1..127 | 99 | Minus |
Translation from 58 to 459
> RH09340.hyp MNLYVLLAVVSVFLNFIHAAPGVDISNDELLDGKYLCEAGSKKYDGPFIV RLISAANGQTVVCYECSQSEFKTKYSVKQCAAGKIGSGHHRDLVPYLVRM DPLYKDTWSSKLKRNFDEIDKASASFSILNQLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13565-PA | 133 | CG13565-PA | 1..133 | 1..133 | 691 | 100 | Plus |
CG13565-PC | 127 | CG13565-PC | 1..38 | 1..38 | 194 | 100 | Plus |
CG13565-PB | 127 | CG13565-PB | 1..38 | 1..38 | 194 | 100 | Plus |
Translation from 58 to 459
> RH09340.pep MNLYVLLAVVSVFLNFIHAAPGVDISNDELLDGKYLCEAGSKKYDGPFIV RLISAANGQTVVCYECSQSEFKTKYSVKQCAAGKIGSGHHRDLVPYLVRM DPLYKDTWSSKLKRNFDEIDKASASFSILNQLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12051-PA | 138 | GF12051-PA | 1..138 | 1..133 | 579 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19976-PA | 137 | GG19976-PA | 1..137 | 1..133 | 578 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orcokinin-PA | 133 | CG13565-PA | 1..133 | 1..133 | 691 | 100 | Plus |
Orcokinin-PC | 127 | CG13565-PC | 1..38 | 1..38 | 194 | 100 | Plus |
Orcokinin-PB | 127 | CG13565-PB | 1..38 | 1..38 | 194 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20713-PA | 65 | GI20713-PA | 1..65 | 68..133 | 137 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10914-PA | 139 | GL10914-PA | 1..139 | 1..133 | 521 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12366-PA | 139 | GA12366-PA | 1..139 | 1..133 | 515 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15489-PA | 133 | GM15489-PA | 1..133 | 1..133 | 695 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24991-PA | 133 | GD24991-PA | 1..133 | 1..133 | 695 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19099-PA | 141 | GK19099-PA | 1..140 | 1..133 | 431 | 57.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11509-PA | 137 | GE11509-PA | 1..137 | 1..133 | 583 | 91.2 | Plus |