Clone RH09469 Report

Search the DGRC for RH09469

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:94
Well:69
Vector:pFlc-1
Associated Gene/TranscriptCG13369-RA
Protein status:RH09469.pep: gold
Preliminary Size:1133
Sequenced Size:1182

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13369 2002-01-01 Sim4 clustering to Release 2
CG13369 2003-01-01 Sim4 clustering to Release 3
CG13369 2005-03-04 Blastp of sequenced clone
CG13369 2008-04-29 Release 5.5 accounting
CG13369 2008-08-15 Release 5.9 accounting
CG13369 2008-12-18 5.12 accounting

Clone Sequence Records

RH09469.complete Sequence

1182 bp (1182 high quality bases) assembled on 2005-03-04

GenBank Submission: BT021233

> RH09469.complete
GACCTCTTCCCCGATCTCGGCCAGAAGCGGACTGGGCCAGTTGGCTGATA
GTGCTCGTTCGGCTGCCCCGCTGTCGCCCTTCCCCTCCTCCACCGAGGTC
AAGTAATCTCGAGTGATAAGCGGCAGTGAACTCTCGTCTCTGCTTCTCCA
TTCCACAAGAAACTATAAATAACAGACTACCCACAAGAGACTAGTGCAAT
TGCAGCAATGGCCCAAACGGAAGTGCTGGTGTTCGGCTCGGCCATCATTG
ACTTTATAAGCTACACGACCCGTCTACCGAAAGCCGGAGAAACGCTCCAT
GGGCATCGCTTTCAGATTGGCTACGGCGGCAAGGGCGCCAATCAGTGTGT
GGCTGCCGCGCGCCAGGGATCCCGAACAGCTCTGGTGGCCAAACTGGGGG
CAGACACATTCGGCAGCGACTACCTGAGACATCTGCGCGAGGAGCGCGTC
AATGTAAACCACGTCGAGCAGCTGGCGGAGGAAACGACGGGCGTGGCCCA
GATAGCCGTGTCAGATGGCGGCGAGAACAACATCATCATTGTGGTGGGCG
CCAACAATCGACTGAGCTCGTGTGACGTTTCCTCGGCGAAGGCGCTCTTC
CAGGAAGCCAAAGTTCTGGTGTGCCAGCTGGAGACGCCCGTTGAGGCCAC
CCTGACCGCTCTGAGAGCCTTCCGGGGCGTGTCCATCGTCAATGCGGCTC
CGGCCATGGCCGACACACCCCCCGAACTTCTTCAGTTGGCCAGCATCTTC
TGTGTGAACGAAAGCGAGGCGGCACTGATGACTCAGATGCCCGACATTGG
CAACATAGAGCACGCCGAAGATGCGGTTGGAAAGCTGATAGCGGCAGGTG
CCAACACGGTGATCATAACTCTGGGCAAACTAGGAGCCGTTTTCGGTTCC
GCCGACTCCAAGGGCGTGTGCCAGCATGTGGCTGCGCCGAGTGTGCCGCC
CGAAAAAGTGGTGGACACGACGGGGGCTGGAGACGCCTTCATTGGGGCCT
TGGCCCACAACTTGGCCCGTCATCCAACGAGGAAACTGGAGGAGCACATA
GCCGCCGCCTGTGCCGTGGCCTCGCAATCCGTTCAGCTACCCGGGACGCA
GTCGAGCTTCCCACACGCTTAGAGGGAAATCCCCAAAAGAATGCAACGCA
ACAATAAATCTCTATCCTAAAAAAAAAAAAAA

RH09469.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13369-RA 1231 CG13369-RA 58..1224 2..1168 5835 100 Plus
CG13364-RA 541 CG13364-RA 478..541 1168..1105 320 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 517787..518338 259..810 2760 100 Plus
chrX 22417052 chrX 518400..518758 810..1168 1780 99.7 Plus
chrX 22417052 chrX 517469..517727 2..260 1295 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 623794..624345 259..810 2760 100 Plus
X 23542271 X 624407..624765 810..1168 1795 100 Plus
X 23542271 X 623476..623734 2..260 1295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 631892..632443 259..810 2760 100 Plus
X 23527363 X 632505..632863 810..1168 1795 100 Plus
X 23527363 X 631574..631832 2..260 1295 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:10:07 has no hits.

RH09469.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:11:21 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 517467..517727 1..260 99 -> Plus
chrX 517789..518337 261..809 100 -> Plus
chrX 518400..518758 810..1168 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:50 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 1..915 208..1122 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:05 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 1..915 208..1122 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:50:26 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 1..915 208..1122 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:13 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 1..915 208..1122 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:59:16 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 1..915 208..1122 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:28:52 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 8..1176 1..1168 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:05 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 8..1176 1..1168 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:50:26 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 7..1175 1..1168 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:13 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 11..1179 1..1168 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:59:16 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
CG13369-RA 7..1175 1..1168 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:21 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
X 623474..623734 1..260 99 -> Plus
X 623796..624344 261..809 100 -> Plus
X 624407..624765 810..1168 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:21 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
X 623474..623734 1..260 99 -> Plus
X 623796..624344 261..809 100 -> Plus
X 624407..624765 810..1168 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:21 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
X 623474..623734 1..260 99 -> Plus
X 623796..624344 261..809 100 -> Plus
X 624407..624765 810..1168 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:50:26 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 517507..517767 1..260 99 -> Plus
arm_X 517829..518377 261..809 100 -> Plus
arm_X 518440..518798 810..1168 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:46:38 Download gff for RH09469.complete
Subject Subject Range Query Range Percent Splice Strand
X 631572..631832 1..260 99 -> Plus
X 631894..632442 261..809 100 -> Plus
X 632505..632863 810..1168 100   Plus

RH09469.hyp Sequence

Translation from 207 to 1121

> RH09469.hyp
MAQTEVLVFGSAIIDFISYTTRLPKAGETLHGHRFQIGYGGKGANQCVAA
ARQGSRTALVAKLGADTFGSDYLRHLREERVNVNHVEQLAEETTGVAQIA
VSDGGENNIIIVVGANNRLSSCDVSSAKALFQEAKVLVCQLETPVEATLT
ALRAFRGVSIVNAAPAMADTPPELLQLASIFCVNESEAALMTQMPDIGNI
EHAEDAVGKLIAAGANTVIITLGKLGAVFGSADSKGVCQHVAAPSVPPEK
VVDTTGAGDAFIGALAHNLARHPTRKLEEHIAAACAVASQSVQLPGTQSS
FPHA*

RH09469.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13369-PA 304 CG13369-PA 1..304 1..304 1527 100 Plus
CG17010-PA 429 CG17010-PA 6..301 5..302 685 48 Plus

RH09469.pep Sequence

Translation from 207 to 1121

> RH09469.pep
MAQTEVLVFGSAIIDFISYTTRLPKAGETLHGHRFQIGYGGKGANQCVAA
ARQGSRTALVAKLGADTFGSDYLRHLREERVNVNHVEQLAEETTGVAQIA
VSDGGENNIIIVVGANNRLSSCDVSSAKALFQEAKVLVCQLETPVEATLT
ALRAFRGVSIVNAAPAMADTPPELLQLASIFCVNESEAALMTQMPDIGNI
EHAEDAVGKLIAAGANTVIITLGKLGAVFGSADSKGVCQHVAAPSVPPEK
VVDTTGAGDAFIGALAHNLARHPTRKLEEHIAAACAVASQSVQLPGTQSS
FPHA*

RH09469.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22103-PA 311 GF22103-PA 12..311 5..304 1232 78.7 Plus
Dana\GF14193-PA 519 GF14193-PA 6..302 5..302 562 39.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12798-PA 304 GG12798-PA 1..304 1..304 1449 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12089-PA 306 GH12089-PA 6..301 5..302 1115 72.8 Plus
Dgri\GH13082-PA 372 GH13082-PA 6..301 5..302 690 47 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13369-PA 304 CG13369-PA 1..304 1..304 1527 100 Plus
CG17010-PA 429 CG17010-PA 6..301 5..302 685 48 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11097-PA 304 GI11097-PA 6..304 5..304 967 63.3 Plus
Dmoj\GI21538-PA 437 GI21538-PA 2..299 3..302 676 45 Plus
Dmoj\GI21549-PA 1459 GI21549-PA 2..299 3..302 642 45.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21383-PA 318 GL21383-PA 4..219 3..218 845 75.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12236-PA 303 GA12236-PA 4..303 3..304 1165 76.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19077-PA 304 GM19077-PA 1..304 1..304 1496 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16516-PA 317 GD16516-PA 1..277 1..276 1274 89.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15781-PA 305 GJ15781-PA 6..304 5..303 1056 68.9 Plus
Dvir\GJ17488-PA 376 GJ17488-PA 2..299 3..302 677 46.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25613-PA 310 GK25613-PA 7..307 5..304 1122 77.1 Plus
Dwil\GK14853-PA 280 GK14853-PA 6..247 5..246 618 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16624-PA 304 GE16624-PA 1..304 1..304 1439 90.1 Plus