Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RH09491.complete Sequence
3737 bp assembled on 2007-08-16
GenBank Submission: BT031018
> RH09491.complete
TGGCGCTTGTTTTTGTTGGTTTTACTTCTACCGTTGCCGTTGCGGTCAGC
AGCGTCATCATCTTCGAGTGACCCACTAATGTGTGTTGCATGTGCAGCAC
CGCTGCACGTCTGCCGCCGCCTTCTAGTCGGGTATTAATTCCATGCAAAC
TGCAGATTTATGGCACGAACTTTGCGAATCTGGGTTGGTCCTCTTTCGGT
CTGCCGCGGCTCGTTATCCCGAGCTGAAATTGCACGGAAAAAGGTCAAAC
ATATAAATTTGTGCTTTCACTAAAATAACCATAAATAATATGAGTAGTGC
GTGCCATCACATTAAATAATCACGTAGATTACGCGTTTGAAAACGTTTTC
TGAAAGTGAACGCAATTTTAACTGCGTGTAGATAAAGTGGATCTATAAAC
GTTCGTTTTATATTGTAGACGACAAACAATATATTATTTTATTCCACAAC
ATAAAACGTTATATATCTACTTGATTTATAAAAGTATTTACAGGTAACCA
CCAGGGGCTAATATTATTATCTAAAATTTCTAAAACAAATTGATAATCAA
AAAAACATCTACACAGCTGGCCCAAAGTAAACGAATGTGTGTTTGTTTAA
TCATATTTACTTTTGATTCATGAAAAACGAGATTCGACTGATATGTTGGT
ATATAAACCAGAGGATTGAGCTTTCTTCGTTTAGATCACAAAATCTCCCC
AAAACGAAAATGAAACTTCTTCTGGTTCTGGCATTGGCAGTCTTCGTAGC
CCACGTGGCTGTGGCCCAGACAACTGATTCGTCTGACGATGGAGATTACT
CTTACGATTACGCTGATGACAACGATACTGCCGGTAGCTCCGAAGACAAC
ACTGCTGATTCTGGAGACACTAGTGATAGCTCCACTGACGTCGACAGTGG
AAACGACTCTGGGGACGTCGATTCCTATGACGACTACGAGGGCTCTAGCG
ATGTTACGGAAGCACCAACTGCTGCTCCAGTTGTCAAAAAGAACAAAAGA
GCTGGTGCCAGGAAAAACAACAGGAACAACAAGAATAAGGCAGCAGCTAA
ACGTCGCAATGCCGCCGCTGCCAAGAAAAGTAATAACAAGAAGGCGGCTA
AGAAGCGAACACCTGTTGCCGCCAAGAAGCGGGCAAATGCTGGACCCAAC
AAACGTAGGCGCTCTGGATAAATCCAGTTTATTATATTCGTAGCTACAAA
TTATAAAAATAAAAAATTATACCAAAAAAATTTGTTCCCAAAATTACCAA
GATTTTTTTCTATGACGTTTATAAGTTAGGTTTTGAATTAATATATAATA
ATGATAATGATATTTACCAAGAATGTGGTTGTTGGGTATGGGTGTTTATT
ATTATGAATTTTGTACAAAACTTGAATATCACAGAAATTTTGAAATATAT
TTAACTATTTCACCCAATGTTCAAAAGACAAGAAAACATTCTACATAAGT
TTTTATCGGCACGTGTTTTTTCCCTCATTTGTAAATAAATATATTTTTGA
TAAACAAAAACATACACCGCATATACTTGAAAAATTATATAATTTTAAAG
ACGTTTAATGTCATATCTATTTTTTCTATAAAACTACTAGCAGGTCGCCT
AACGCGTAAACCATAGACAAATTGTTCAAAAATCCAGATAAGACATTTGT
GACCTTGGCTCTTTTAATATAAAAGAGTTTATATTACTTTTTCGTGCTCT
AACACAAAATATAATTTCATAATTTCAACATATAGCAATCGAAAAATGTT
AAACAAATACAAGCAGCACACACAGGTGCTCTAAGCCACCGAAAATTAAG
ACGATGAATTAAAAAACCAATATTTGCATTCTACAGATGTACATAGAAAA
ATAATGTAAAAAAGCTTTATATATTTATAAATTTCTTCAGAGGAGAAAAA
ACTATAAATACCCAGTGTTGAAGACTTTTAAACTCAGACGTTTATACCTA
AGGTTACCTATCTGTTCGTTGACTCTATAGATACAAAAAAAAAAAGATGA
GGCTGCTGTTGGTTTTAAGCCTGGCCATATTGGTTGCCTTCGTAACGGGT
GCTGATGACACTGACGATGACTATTACGATTATTACGACTATGGTGATGA
CTACTATGACGACTCTGATGTAGAGTCCAGTTCGGAAAGTGGTGTTGGTG
CATCCAGTAGCTCAGAAGATGATGCTAGTACCTCCGAGGACAGTTCCTCC
GGCGAAGCTTCCGATACAGGTAGTTCTTCAGAAACTTCTGGAGATGGTTC
CTCCGCCGAAACGACCTCCAGTTCAACTCCAACCAAGGCAGAAAAAGCCA
AGAAAACTGCTGCACGCAGAGCTAGACGGCGCAGGCGCACCACCACCGCT
GCTCCCAAACGCAAAGTAGCGGCAGCCGCGTCTGCCAAGAAGCAAACACC
TGTTGCCCAAAAGAAGAAGACACCTGTGGCAGCCAAGAAGAAGGCGAATA
CTGCCGCCAACAAACGCAAACGCACAGGCTAAGCAGTTCGAAAAAAGGAT
AAATTCCCCATAGTCACTGAAAGTTTTTACATCAAACTTTTAAGAGGACC
AAGAGACATCTTGTAGAATCTACATTAGTCTGGGAATATTTCATATGTTG
TTTTCTGTACAAAAAATCCATATAAAAATACAAAGATAAGGAGACGTTTT
GTAATTTACCAAAAATATACATTATTAATCCAAAATATACAACAATTTTG
TATTTGAGGGCTTAAATGATCTTTCTTCGGAGAGAAACTAATCATTACAA
ATCGTTTCTGAATACTTAAAATCGAAAGCCAACTAAAAATCAAGTATTCC
TTAAAAGGAAAAAAATTTTTTGAACGAAACATTCATTTAATAAACTGTTG
TGGTTTATATACAAGTCTCTGCAGCCAGATTAGTATAAATCGTTCTAGTG
GCGTAGTATTACCAAAGTCAGCTGCATTTTGCTGCATATTTTTAGGCGCC
CACATTTACATTTACCAGCGCTTTGGCGCATTGTGTTTCTATTTAGACGT
AAGCCAATAGCATCTATAAATAGTAATTATGCCCTCATACAAGTAGACAT
AAATGCACAGGGACACTTAATTACTGATGCGCACAGGCGACAATTGTTTA
ATGGCGAAAGGATAACGAAAAGGGAGGAGCCTGAGTAGCGCCATCGGCCA
CCACAATGGGACCATTGTTTTCGATTTCAATGCCGACATTCTGGCAGTGG
CACTGCCAACAGAAATCCCGTGTATCCAGTGCACTGCGGCCCAGATGAAA
GCCACTCCGCATCCAAGTGTTTGTGTTTGCCCGAGAGAGATCCAATCTTC
CAGTGTGCTGGTGGCGGCAAAGCACACATCCATAGACACAACCACACTCA
CACACCGATGTTTCCTCTTGTGGCACCCGCTGGGCCGCTTAGTGAGCCAA
GTGTGGCAACAATCTGAATCATCGTTTTAGTTTCCACCCTACATCCCCAC
CACCAGATCACCAGGGTATGAACCGATTTGTGAATTCGCCGGGAATCTTA
GGTTGGGATGACCAGTCAATAACAATATCAAGCAGGAAATGGTTGCAAAT
TATCGAAAATTCTATGTATCTACTAGATTTGGTGTTATCTACGCAAATGT
CTAAAAGTTGCATTAAATTGTGGATAACTTTGATTTGATTTATACATTCT
TATATATAATTTTATTTTGTTAAAATCCTTTTTTTATTATAATAATAAAA
CAGCTTTGATCCTGAATGTTATAAGTATCCTATTTCA
RH09491.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17362-RA | 1171 | CG17362-RA | 1..1171 | 1..1171 | 5855 | 100 | Plus |
CG9040-RA | 728 | CG9040-RA | 1..728 | 1954..2681 | 3640 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 13976006..13979762 | 1..3736 | 17805 | 98.6 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13985946..13989682 | 1..3737 | 18685 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 13979046..13982782 | 1..3737 | 18685 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 19:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6832..7028 | 1365..1565 | 175 | 59 | Plus |
412 | 7567 | 412 412 7567bp | 6881..6996 | 1434..1545 | 162 | 68.9 | Plus |
Circe | 7450 | Circe CIRC 7450bp | 6801..6958 | 1675..1831 | 130 | 56.2 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 5687..5763 | 1482..1558 | 123 | 65.4 | Plus |
412 | 7567 | 412 412 7567bp | 6911..7039 | 3730..3603 | 120 | 61.2 | Minus |
RH09491.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:32:51 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 13976615..13979675 | 600..3649 | 98 | == | Plus |
chr3L | 13976006..13976601 | 1..599 | 99 | <- | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:52 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17362-RA | 1..552 | 620..1171 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:29 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17362-RA | 1..552 | 620..1171 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:58:37 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 1..486 | 1997..2482 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:58 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17362-RA | 1..552 | 620..1171 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:24 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 1..486 | 1997..2482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:40 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17362-RA | 1..1171 | 1..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:29 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 1..749 | 1933..2681 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:37 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 1..749 | 1933..2681 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:58 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17362-RA | 1..1171 | 1..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:24 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 1..749 | 1933..2681 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:51 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13985946..13989681 | 1..3736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:51 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13985946..13989681 | 1..3736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:51 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13985946..13989681 | 1..3736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:37 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13979046..13982781 | 1..3736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:51 Download gff for
RH09491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13979046..13982781 | 1..3736 | 100 | | Plus |
RH09491.pep Sequence
Translation from 619 to 1170
> RH09491.pep
MKNEIRLICWYINQRIELSSFRSQNLPKTKMKLLLVLALAVFVAHVAVAQ
TTDSSDDGDYSYDYADDNDTAGSSEDNTADSGDTSDSSTDVDSGNDSGDV
DSYDDYEGSSDVTEAPTAAPVVKKNKRAGARKNNRNNKNKAAAKRRNAAA
AKKSNNKKAAKKRTPVAAKKRANAGPNKRRRSG*
RH09491.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG15661-PA | 179 | GG15661-PA | 1..179 | 31..183 | 215 | 59.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17362-PB | 153 | CG17362-PB | 1..153 | 31..183 | 772 | 100 | Plus |
CG9040-PA | 161 | CG9040-PA | 1..161 | 31..183 | 253 | 42.9 | Plus |
Pig1-PB | 172 | CG10790-PB | 4..166 | 29..182 | 189 | 35.5 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL15721-PA | 174 | GL15721-PA | 1..172 | 31..182 | 140 | 35.6 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23774-PA | 174 | GA23774-PA | 1..172 | 31..182 | 152 | 36.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25440-PA | 153 | GM25440-PA | 20..153 | 50..183 | 460 | 90.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14467-PA | 153 | GD14467-PA | 20..153 | 50..183 | 434 | 93.3 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE21990-PA | 167 | GE21990-PA | 1..166 | 31..182 | 307 | 65.7 | Plus |
RH09491.hyp Sequence
Translation from 619 to 1170
> RH09491.hyp
MKNEIRLICWYINQRIELSSFRSQNLPKTKMKLLLVLALAVFVAHVAVAQ
TTDSSDDGDYSYDYADDNDTAGSSEDNTADSGDTSDSSTDVDSGNDSGDV
DSYDDYEGSSDVTEAPTAAPVVKKNKRAGARKNNRNNKNKAAAKRRNAAA
AKKSNNKKAAKKRTPVAAKKRANAGPNKRRRSG*
RH09491.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17362-PB | 153 | CG17362-PB | 1..153 | 31..183 | 772 | 100 | Plus |
CG9040-PA | 161 | CG9040-PA | 1..161 | 31..183 | 253 | 42.9 | Plus |
Pig1-PB | 172 | CG10790-PB | 4..166 | 29..182 | 189 | 35.5 | Plus |