Clone RH09491 Report

Search the DGRC for RH09491

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:94
Well:91
Vector:pFlc-1
Associated Gene/TranscriptCG17362-RB
Protein status:RH09491.pep: gold
Preliminary Size:552
Sequenced Size:3737

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17362 2002-01-01 Sim4 clustering to Release 2
CG17362 2003-01-01 Sim4 clustering to Release 3
CG17362 2008-04-29 Release 5.5 accounting
CG17362 2008-04-29 Picked prior to 5.5
CG9040 2008-08-15 Release 5.9 accounting
CG17362 2008-08-15 Release 5.9 accounting
CG9040 2008-12-18 5.12 accounting
CG17362 2008-12-18 5.12 accounting

Clone Sequence Records

RH09491.complete Sequence

3737 bp assembled on 2007-08-16

GenBank Submission: BT031018

> RH09491.complete
TGGCGCTTGTTTTTGTTGGTTTTACTTCTACCGTTGCCGTTGCGGTCAGC
AGCGTCATCATCTTCGAGTGACCCACTAATGTGTGTTGCATGTGCAGCAC
CGCTGCACGTCTGCCGCCGCCTTCTAGTCGGGTATTAATTCCATGCAAAC
TGCAGATTTATGGCACGAACTTTGCGAATCTGGGTTGGTCCTCTTTCGGT
CTGCCGCGGCTCGTTATCCCGAGCTGAAATTGCACGGAAAAAGGTCAAAC
ATATAAATTTGTGCTTTCACTAAAATAACCATAAATAATATGAGTAGTGC
GTGCCATCACATTAAATAATCACGTAGATTACGCGTTTGAAAACGTTTTC
TGAAAGTGAACGCAATTTTAACTGCGTGTAGATAAAGTGGATCTATAAAC
GTTCGTTTTATATTGTAGACGACAAACAATATATTATTTTATTCCACAAC
ATAAAACGTTATATATCTACTTGATTTATAAAAGTATTTACAGGTAACCA
CCAGGGGCTAATATTATTATCTAAAATTTCTAAAACAAATTGATAATCAA
AAAAACATCTACACAGCTGGCCCAAAGTAAACGAATGTGTGTTTGTTTAA
TCATATTTACTTTTGATTCATGAAAAACGAGATTCGACTGATATGTTGGT
ATATAAACCAGAGGATTGAGCTTTCTTCGTTTAGATCACAAAATCTCCCC
AAAACGAAAATGAAACTTCTTCTGGTTCTGGCATTGGCAGTCTTCGTAGC
CCACGTGGCTGTGGCCCAGACAACTGATTCGTCTGACGATGGAGATTACT
CTTACGATTACGCTGATGACAACGATACTGCCGGTAGCTCCGAAGACAAC
ACTGCTGATTCTGGAGACACTAGTGATAGCTCCACTGACGTCGACAGTGG
AAACGACTCTGGGGACGTCGATTCCTATGACGACTACGAGGGCTCTAGCG
ATGTTACGGAAGCACCAACTGCTGCTCCAGTTGTCAAAAAGAACAAAAGA
GCTGGTGCCAGGAAAAACAACAGGAACAACAAGAATAAGGCAGCAGCTAA
ACGTCGCAATGCCGCCGCTGCCAAGAAAAGTAATAACAAGAAGGCGGCTA
AGAAGCGAACACCTGTTGCCGCCAAGAAGCGGGCAAATGCTGGACCCAAC
AAACGTAGGCGCTCTGGATAAATCCAGTTTATTATATTCGTAGCTACAAA
TTATAAAAATAAAAAATTATACCAAAAAAATTTGTTCCCAAAATTACCAA
GATTTTTTTCTATGACGTTTATAAGTTAGGTTTTGAATTAATATATAATA
ATGATAATGATATTTACCAAGAATGTGGTTGTTGGGTATGGGTGTTTATT
ATTATGAATTTTGTACAAAACTTGAATATCACAGAAATTTTGAAATATAT
TTAACTATTTCACCCAATGTTCAAAAGACAAGAAAACATTCTACATAAGT
TTTTATCGGCACGTGTTTTTTCCCTCATTTGTAAATAAATATATTTTTGA
TAAACAAAAACATACACCGCATATACTTGAAAAATTATATAATTTTAAAG
ACGTTTAATGTCATATCTATTTTTTCTATAAAACTACTAGCAGGTCGCCT
AACGCGTAAACCATAGACAAATTGTTCAAAAATCCAGATAAGACATTTGT
GACCTTGGCTCTTTTAATATAAAAGAGTTTATATTACTTTTTCGTGCTCT
AACACAAAATATAATTTCATAATTTCAACATATAGCAATCGAAAAATGTT
AAACAAATACAAGCAGCACACACAGGTGCTCTAAGCCACCGAAAATTAAG
ACGATGAATTAAAAAACCAATATTTGCATTCTACAGATGTACATAGAAAA
ATAATGTAAAAAAGCTTTATATATTTATAAATTTCTTCAGAGGAGAAAAA
ACTATAAATACCCAGTGTTGAAGACTTTTAAACTCAGACGTTTATACCTA
AGGTTACCTATCTGTTCGTTGACTCTATAGATACAAAAAAAAAAAGATGA
GGCTGCTGTTGGTTTTAAGCCTGGCCATATTGGTTGCCTTCGTAACGGGT
GCTGATGACACTGACGATGACTATTACGATTATTACGACTATGGTGATGA
CTACTATGACGACTCTGATGTAGAGTCCAGTTCGGAAAGTGGTGTTGGTG
CATCCAGTAGCTCAGAAGATGATGCTAGTACCTCCGAGGACAGTTCCTCC
GGCGAAGCTTCCGATACAGGTAGTTCTTCAGAAACTTCTGGAGATGGTTC
CTCCGCCGAAACGACCTCCAGTTCAACTCCAACCAAGGCAGAAAAAGCCA
AGAAAACTGCTGCACGCAGAGCTAGACGGCGCAGGCGCACCACCACCGCT
GCTCCCAAACGCAAAGTAGCGGCAGCCGCGTCTGCCAAGAAGCAAACACC
TGTTGCCCAAAAGAAGAAGACACCTGTGGCAGCCAAGAAGAAGGCGAATA
CTGCCGCCAACAAACGCAAACGCACAGGCTAAGCAGTTCGAAAAAAGGAT
AAATTCCCCATAGTCACTGAAAGTTTTTACATCAAACTTTTAAGAGGACC
AAGAGACATCTTGTAGAATCTACATTAGTCTGGGAATATTTCATATGTTG
TTTTCTGTACAAAAAATCCATATAAAAATACAAAGATAAGGAGACGTTTT
GTAATTTACCAAAAATATACATTATTAATCCAAAATATACAACAATTTTG
TATTTGAGGGCTTAAATGATCTTTCTTCGGAGAGAAACTAATCATTACAA
ATCGTTTCTGAATACTTAAAATCGAAAGCCAACTAAAAATCAAGTATTCC
TTAAAAGGAAAAAAATTTTTTGAACGAAACATTCATTTAATAAACTGTTG
TGGTTTATATACAAGTCTCTGCAGCCAGATTAGTATAAATCGTTCTAGTG
GCGTAGTATTACCAAAGTCAGCTGCATTTTGCTGCATATTTTTAGGCGCC
CACATTTACATTTACCAGCGCTTTGGCGCATTGTGTTTCTATTTAGACGT
AAGCCAATAGCATCTATAAATAGTAATTATGCCCTCATACAAGTAGACAT
AAATGCACAGGGACACTTAATTACTGATGCGCACAGGCGACAATTGTTTA
ATGGCGAAAGGATAACGAAAAGGGAGGAGCCTGAGTAGCGCCATCGGCCA
CCACAATGGGACCATTGTTTTCGATTTCAATGCCGACATTCTGGCAGTGG
CACTGCCAACAGAAATCCCGTGTATCCAGTGCACTGCGGCCCAGATGAAA
GCCACTCCGCATCCAAGTGTTTGTGTTTGCCCGAGAGAGATCCAATCTTC
CAGTGTGCTGGTGGCGGCAAAGCACACATCCATAGACACAACCACACTCA
CACACCGATGTTTCCTCTTGTGGCACCCGCTGGGCCGCTTAGTGAGCCAA
GTGTGGCAACAATCTGAATCATCGTTTTAGTTTCCACCCTACATCCCCAC
CACCAGATCACCAGGGTATGAACCGATTTGTGAATTCGCCGGGAATCTTA
GGTTGGGATGACCAGTCAATAACAATATCAAGCAGGAAATGGTTGCAAAT
TATCGAAAATTCTATGTATCTACTAGATTTGGTGTTATCTACGCAAATGT
CTAAAAGTTGCATTAAATTGTGGATAACTTTGATTTGATTTATACATTCT
TATATATAATTTTATTTTGTTAAAATCCTTTTTTTATTATAATAATAAAA
CAGCTTTGATCCTGAATGTTATAAGTATCCTATTTCA

RH09491.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17362-RA 1171 CG17362-RA 1..1171 1..1171 5855 100 Plus
CG9040-RA 728 CG9040-RA 1..728 1954..2681 3640 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13976006..13979762 1..3736 17805 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13985946..13989682 1..3737 18685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13979046..13982782 1..3737 18685 100 Plus
Blast to na_te.dros performed 2019-03-15 19:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6832..7028 1365..1565 175 59 Plus
412 7567 412 412 7567bp 6881..6996 1434..1545 162 68.9 Plus
Circe 7450 Circe CIRC 7450bp 6801..6958 1675..1831 130 56.2 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 5687..5763 1482..1558 123 65.4 Plus
412 7567 412 412 7567bp 6911..7039 3730..3603 120 61.2 Minus

RH09491.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:32:51 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13976615..13979675 600..3649 98 == Plus
chr3L 13976006..13976601 1..599 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:52 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RA 1..552 620..1171 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:29 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RA 1..552 620..1171 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:58:37 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 1..486 1997..2482 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:58 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RA 1..552 620..1171 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:24 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 1..486 1997..2482 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:40 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RA 1..1171 1..1171 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:29 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 1..749 1933..2681 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:37 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 1..749 1933..2681 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:58 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RA 1..1171 1..1171 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:24 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 1..749 1933..2681 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:51 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13985946..13989681 1..3736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:51 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13985946..13989681 1..3736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:51 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13985946..13989681 1..3736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:37 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13979046..13982781 1..3736 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:51 Download gff for RH09491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13979046..13982781 1..3736 100   Plus

RH09491.pep Sequence

Translation from 619 to 1170

> RH09491.pep
MKNEIRLICWYINQRIELSSFRSQNLPKTKMKLLLVLALAVFVAHVAVAQ
TTDSSDDGDYSYDYADDNDTAGSSEDNTADSGDTSDSSTDVDSGNDSGDV
DSYDDYEGSSDVTEAPTAAPVVKKNKRAGARKNNRNNKNKAAAKRRNAAA
AKKSNNKKAAKKRTPVAAKKRANAGPNKRRRSG*

RH09491.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15661-PA 179 GG15661-PA 1..179 31..183 215 59.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17362-PB 153 CG17362-PB 1..153 31..183 772 100 Plus
CG9040-PA 161 CG9040-PA 1..161 31..183 253 42.9 Plus
Pig1-PB 172 CG10790-PB 4..166 29..182 189 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15721-PA 174 GL15721-PA 1..172 31..182 140 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23774-PA 174 GA23774-PA 1..172 31..182 152 36.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25440-PA 153 GM25440-PA 20..153 50..183 460 90.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14467-PA 153 GD14467-PA 20..153 50..183 434 93.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21990-PA 167 GE21990-PA 1..166 31..182 307 65.7 Plus

RH09491.hyp Sequence

Translation from 619 to 1170

> RH09491.hyp
MKNEIRLICWYINQRIELSSFRSQNLPKTKMKLLLVLALAVFVAHVAVAQ
TTDSSDDGDYSYDYADDNDTAGSSEDNTADSGDTSDSSTDVDSGNDSGDV
DSYDDYEGSSDVTEAPTAAPVVKKNKRAGARKNNRNNKNKAAAKRRNAAA
AKKSNNKKAAKKRTPVAAKKRANAGPNKRRRSG*

RH09491.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17362-PB 153 CG17362-PB 1..153 31..183 772 100 Plus
CG9040-PA 161 CG9040-PA 1..161 31..183 253 42.9 Plus
Pig1-PB 172 CG10790-PB 4..166 29..182 189 35.5 Plus