Clone RH09582 Report

Search the DGRC for RH09582

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:95
Well:82
Vector:pFlc-1
Associated Gene/Transcriptlawc-RA
Protein status:RH09582.pep: gold
Sequenced Size:1085

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11190 2002-01-01 Sim4 clustering to Release 2
CG32711 2002-02-22 Blastp of sequenced clone
CG32711 2003-01-01 Sim4 clustering to Release 3
CG32711 2008-04-29 Release 5.5 accounting
CG32711 2008-08-15 Release 5.9 accounting
CG32711 2008-12-18 5.12 accounting

Clone Sequence Records

RH09582.complete Sequence

1085 bp (1085 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089652

> RH09582.complete
GAGTGTGTGAGTCGCGATAAACGCGAGCGAAACGGGCGGCGCAACTGAAA
TCGCGTACCGACTGGCGCAGACACGCACACCACCGCACAACAGCGCGTAT
ACGTATACGGGCGAGAGAGCGCATGCTCTCCGCCACACACACGCGGTCAA
CGTTTTCTCCGCTTTGTGGCGCCGCGCAAGTTTTGTCGCAGCAGCAAACA
CGCAATAAAAGTTCAAAAACAGTTGAAGTATACCGCGACGCGAGTAAAAA
TCTTTCCTTCGACGTCGTCTCTGTTCGTTGTAGTAGTTGTTGTTGCTGCT
GTTGTTCTTGTTGCTGCTACTGCCGCTGCTTAACGTTTCTATAGTGTGTT
CCGTTCCGCGAATTCTCATGTGCATTTATGAAGATATACATATATATATA
TATACATATATCTGCATATATGACTGACCAAAAGATTCTCCACCGCTCTG
GATATGCGAACAAAGTCCTTAGCTGCAGCGACATTAGTTTAAATTTCAAG
CCGGCTATCGCATGGTGATTCCACCTGCACGTGCAAAGCGCGACTGTGGA
TATCGCAGGACGAGAGTCGCGTCTTCTCCTGCGAGGAGCAACTGCATCAT
AATCATAGCCACAGATTGAAAAGACCGAAAGCAGATGCAAGCTCAACGAC
AGGACTAAGAATCGGAAGCAAAACTTCCCCAAAGCAATGGCACAATACAC
CCGGAAACGCAAAAGAAAGAAATTTAAAGAGCTGAAAGCCCCGTGGACTT
CATGAACCCAGGTGCAACAAATAATTTCAAGGAGAAGATGTTTTTGTGGT
CAAAAACGTGCAGATGACTTCTAAGAAGTTGGAAAATCATGTATTTACTC
GGAAAGAAGCCAGAACTGAAGTAGCATACTTATTAGTATTATCAAATGAT
GAGTTTTTTCATCATAGTTTTAGTTCTATATTTATAGAAAAAAAAAACTT
TCCTTGTTACTTTTAGTTTTTTCATTTGAAAGACTGCCGTTGACTTTTTC
ATTTTATTCGCGTGCATATTAAATATGTGTGTTAAATATACATAATAATA
AATGATCGCTGTGTTTATGCAAAAAAAAAAAAAAA

RH09582.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32711-RA 1294 CG32711-RA 180..1249 2..1071 5350 100 Plus
CG32711.a 1259 CG32711.a 73..765 2..694 3465 100 Plus
CG32711-RB 1343 CG32711-RB 708..1343 435..1070 3180 100 Plus
CG32711-RB 1343 CG32711-RB 15..447 2..434 2165 100 Plus
CG32711.a 1259 CG32711.a 838..1214 695..1071 1885 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8301412..8301844 434..2 2165 100 Minus
chrX 22417052 chrX 8299755..8300071 1070..754 1585 100 Minus
chrX 22417052 chrX 8300266..8300527 694..433 1310 100 Minus
chrX 22417052 chrX 8300134..8300193 754..695 300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8409663..8410095 434..2 2165 100 Minus
X 23542271 X 8408007..8408324 1071..754 1590 100 Minus
X 23542271 X 8408519..8408780 694..433 1310 100 Minus
X 23542271 X 8408387..8408446 754..695 300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8417761..8418193 434..2 2165 100 Minus
X 23527363 X 8416105..8416422 1071..754 1590 100 Minus
X 23527363 X 8416617..8416878 694..433 1310 100 Minus
X 23527363 X 8416485..8416544 754..695 300 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:46:46 has no hits.

RH09582.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:47:42 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8299755..8300071 754..1070 100 <- Minus
chrX 8300135..8300193 695..753 100 <- Minus
chrX 8300266..8300525 435..694 100 <- Minus
chrX 8301412..8301844 1..434 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:40:54 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
CG32711-RA 1..222 123..344 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:05 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
CG32711-RB 1..222 123..344 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:08 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
lawc-RD 1..222 123..344 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:06 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
CG32711-RA 1..222 123..344 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:18 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
lawc-RD 1..222 123..344 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:25 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
CG32711-RA 1..1069 2..1070 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:05 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
CG32711-RA 1..1069 2..1070 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:08 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
lawc-RC 1563..2632 1..1070 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:06 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
CG32711-RA 1..1069 2..1070 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:18 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
lawc-RC 1563..2632 1..1070 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:42 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
X 8408008..8408324 754..1070 100 <- Minus
X 8408388..8408446 695..753 100 <- Minus
X 8408519..8408778 435..694 100 <- Minus
X 8409663..8410095 1..434 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:42 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
X 8408008..8408324 754..1070 100 <- Minus
X 8408388..8408446 695..753 100 <- Minus
X 8408519..8408778 435..694 100 <- Minus
X 8409663..8410095 1..434 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:42 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
X 8408008..8408324 754..1070 100 <- Minus
X 8408388..8408446 695..753 100 <- Minus
X 8408519..8408778 435..694 100 <- Minus
X 8409663..8410095 1..434 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:08 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8302041..8302357 754..1070 100 <- Minus
arm_X 8302421..8302479 695..753 100 <- Minus
arm_X 8302552..8302811 435..694 100 <- Minus
arm_X 8303696..8304128 1..434 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:08 Download gff for RH09582.complete
Subject Subject Range Query Range Percent Splice Strand
X 8416106..8416422 754..1070 100 <- Minus
X 8416486..8416544 695..753 100 <- Minus
X 8416617..8416876 435..694 100 <- Minus
X 8417761..8418193 1..434 99   Minus

RH09582.hyp Sequence

Translation from 122 to 343

> RH09582.hyp
MLSATHTRSTFSPLCGAAQVLSQQQTRNKSSKTVEVYRDASKNLSFDVVS
VRCSSCCCCCCSCCCYCRCLTFL*

RH09582.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
lawc-PA 73 CG32711-PA 1..73 1..73 406 100 Plus
lawc-PB 73 CG32711-PB 1..73 1..73 406 100 Plus
lawc-PD 73 CG32711-PD 1..73 1..73 406 100 Plus
lawc-PC 73 CG32711-PC 1..73 1..73 406 100 Plus

RH09582.pep Sequence

Translation from 122 to 343

> RH09582.pep
MLSATHTRSTFSPLCGAAQVLSQQQTRNKSSKTVEVYRDASKNLSFDVVS
VRCSSCCCCCCSCCCYCRCLTFL*

RH09582.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19054-PA 66 GG19054-PA 1..56 1..56 264 98.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
lawc-PA 73 CG32711-PA 1..73 1..73 406 100 Plus
lawc-PB 73 CG32711-PB 1..73 1..73 406 100 Plus
lawc-PD 73 CG32711-PD 1..73 1..73 406 100 Plus
lawc-PC 73 CG32711-PC 1..73 1..73 406 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21398-PA 68 GM21398-PA 1..54 1..54 230 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24572-PA 77 GD24572-PA 1..54 1..54 251 96.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17458-PA 69 GE17458-PA 1..69 1..73 258 89 Plus