BDGP Sequence Production Resources |
Search the DGRC for RH09855
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 98 |
Well: | 55 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Drep-3-RA |
Protein status: | RH09855.pep: gold |
Sequenced Size: | 1570 |
Gene | Date | Evidence |
---|---|---|
CG8364 | 2007-09-25 | DGC5 pick |
Rep3 | 2008-04-29 | Release 5.5 accounting |
Rep3 | 2008-04-29 | Picked prior to 5.5 |
Rep3 | 2008-08-15 | Release 5.9 accounting |
Rep3 | 2008-12-18 | 5.12 accounting |
1570 bp assembled on 2007-12-03
GenBank Submission: BT031295
> RH09855.complete GATTCCAAGTTCGGCCGGCTTTTGTTGCACTTGGCTGCTGTGAGTAGTCG GCTCGCGATCTCAGCCAGAATCGCGTATTGTAATTGTTGCCGGAAGATGT GAAGAATTCGGTTTTTAACTTAAAGTGCACGCAAGGAGTCCAGACAAGGC GAACAAACTCTCGAGACGAGGTAAATACATGACAGCAATGAATGCGGATG AGACAAAGCTGGCTGGAATGCCTCAAGGAGCTGAGGAGGAGCAGGAACCG GAGAGGGAGCAGAAGAAGGAGAGCGATGGAGCAGCAGCTGCAGCAGGAGT ACAGTGTGATCCTGATAGCAGAATAGTGGCTCCGCCGCCCAGGCAGCGGA CTCTGACAAGGACGGCCGAACTGGACGCGGACTGCGAGGACATCGAGTTA GATGCCGACGATGGTTTGGACGATGCGGCGGATAGCATCACCTTGGAGTT GGCCCTATCGCCGCACAGCAGCGCCACGCCCACGCCCTCGCCCACCACCG CCGACGAGGATTTCGCCCAGCTGGACAACAGCAAGCCCTTCAAGATCAAG GACATCACGAGGAACATCCGCAAGGCAGTTGTGGCCACAACGCTGTCGGA GCTGCGGACGAAGGTGTCGCTGAAATTTGAGCGGGCTCAGCCGGCGATAC ACCTGGATTGCGATGGCACCGAGGTCGACGATGAGGAGTACTTCAGCACT CTGGAGCCAAATGCCGAATTGATTGCCGTCTTTCCTGGCGAGCAGTGGCG CGATCCCAGTGACTACAATGCCAATCTGCGTCGCACATCGCTGGATGCAC AGCGTCTGCGGAGTCTGGTGAGCAAACTGCAGCCGAACTATATGAACGAT GATGATTTGGATAAGCTGTCGAACATGGATCCCAACTCCCTGGTGGATAT CACGGGTCGGGAGCCCAAGGACAACGAATACTCAGCCAGAAGCGATGCCG CACGGCTATCAACGGAATTGTCTTGCTAAGGGAATGCATTTTTCCCTCAA CGAATTAACGTACATATGTTAGCTTAAGAAATGTGTGAATTGGTATGTAA ATAGGGAATTTGTACGAGTTTATATGGCTAGACGGAGTATTTTTGGAAAA CGTTTTGATGACAGGCACTTGATGCGACCGATATTTGGATGGTTGTTTTT GCTGCTAACCGTAGATCAGAAAGTTGTGTATTTTTCGAGCCCACATTGTC GTAGAGCAACTCACCCCGAATGTCTATAATCAGCCGCTAATTGTTCCTAG ACCAATAGTCGTGTATGAGCCCATAGCCTGGAGTGCCTTGAAGGCCGATC TCCAGTTATGGACTACCTTATCCTCACCTCACCTAACCTCACTCAGCGGA CGATTAACGAGCTGCAGAATAGATTTTGATCTAGACAAATAGTTATTAAA AAATATATATATATATTTTCCATAGCAGAATCCTTGTGAATGTCACACGA ATACCAATGCAGATTGGGTTATTAGGGAGCAACTAGAACTTGATGTTACT GAATCTCAATTAAATGAATTAATAATGGAATAAACCTTCACCCTAGGTGC ACAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7949057..7949858 | 755..1554 | 3915 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 7943197..7943610 | 131..544 | 2070 | 100 | Plus |
chr2R | 21145070 | chr2R | 7948738..7948953 | 539..754 | 1050 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 7942313..7942442 | 2..131 | 635 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12061821..12062623 | 755..1557 | 4015 | 100 | Plus |
2R | 25286936 | 2R | 12055973..12056386 | 131..544 | 2070 | 100 | Plus |
2R | 25286936 | 2R | 12061502..12061717 | 539..754 | 1065 | 99.5 | Plus |
2R | 25286936 | 2R | 12055089..12055218 | 2..131 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12063020..12063822 | 755..1557 | 4015 | 100 | Plus |
2R | 25260384 | 2R | 12057172..12057585 | 131..544 | 2070 | 100 | Plus |
2R | 25260384 | 2R | 12062701..12062916 | 539..754 | 1065 | 99.5 | Plus |
2R | 25260384 | 2R | 12056288..12056417 | 2..131 | 650 | 100 | Plus |
2R | 25260384 | 2R | 12049286..12049384 | 650..748 | 150 | 76.7 | Plus |
2R | 25260384 | 2R | 12049845..12049909 | 842..906 | 145 | 81.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7948744..7948953 | 545..754 | 99 | -> | Plus |
chr2R | 7942312..7942442 | 1..131 | 98 | -> | Plus |
chr2R | 7943198..7943610 | 132..544 | 90 | -> | Plus |
chr2R | 7949057..7949858 | 755..1554 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep3-RA | 1..801 | 179..979 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-3-RA | 1..801 | 179..979 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-3-RB | 1..801 | 179..979 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep3-RA | 1..801 | 179..979 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-3-RB | 1..801 | 179..979 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep3-RA | 2..1554 | 2..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-3-RA | 2..1554 | 2..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-3-RA | 1..1553 | 2..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep3-RA | 2..1554 | 2..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-3-RA | 1..1553 | 2..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12055088..12055218 | 1..131 | 99 | -> | Plus |
2R | 12055974..12056386 | 132..544 | 100 | -> | Plus |
2R | 12061508..12061717 | 545..754 | 100 | -> | Plus |
2R | 12061821..12062620 | 755..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12055088..12055218 | 1..131 | 99 | -> | Plus |
2R | 12055974..12056386 | 132..544 | 100 | -> | Plus |
2R | 12061508..12061717 | 545..754 | 100 | -> | Plus |
2R | 12061821..12062620 | 755..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12055088..12055218 | 1..131 | 99 | -> | Plus |
2R | 12055974..12056386 | 132..544 | 100 | -> | Plus |
2R | 12061508..12061717 | 545..754 | 100 | -> | Plus |
2R | 12061821..12062620 | 755..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7942593..7942723 | 1..131 | 99 | -> | Plus |
arm_2R | 7943479..7943891 | 132..544 | 100 | -> | Plus |
arm_2R | 7949013..7949222 | 545..754 | 100 | -> | Plus |
arm_2R | 7949326..7950125 | 755..1554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12062707..12062916 | 545..754 | 100 | -> | Plus |
2R | 12057173..12057585 | 132..544 | 100 | -> | Plus |
2R | 12063020..12063819 | 755..1554 | 100 | Plus | |
2R | 12056287..12056417 | 1..131 | 99 | -> | Plus |
Translation from 178 to 978
> RH09855.pep MTAMNADETKLAGMPQGAEEEQEPEREQKKESDGAAAAAGVQCDPDSRIV APPPRQRTLTRTAELDADCEDIELDADDGLDDAADSITLELALSPHSSAT PTPSPTTADEDFAQLDNSKPFKIKDITRNIRKAVVATTLSELRTKVSLKF ERAQPAIHLDCDGTEVDDEEYFSTLEPNAELIAVFPGEQWRDPSDYNANL RRTSLDAQRLRSLVSKLQPNYMNDDDLDKLSNMDPNSLVDITGREPKDNE YSARSDAARLSTELSC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12289-PA | 260 | GF12289-PA | 1..260 | 1..266 | 852 | 74.9 | Plus |
Dana\GF12288-PA | 300 | GF12288-PA | 9..169 | 119..245 | 383 | 49.7 | Plus |
Dana\GF11819-PA | 608 | GF11819-PA | 110..204 | 100..190 | 159 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20243-PA | 262 | GG20243-PA | 1..262 | 1..266 | 1098 | 91.7 | Plus |
Dere\GG20241-PA | 297 | GG20241-PA | 9..168 | 116..245 | 401 | 52.5 | Plus |
Dere\GG23432-PA | 478 | GG23432-PA | 10..84 | 119..190 | 155 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20858-PA | 243 | GH20858-PA | 21..243 | 59..266 | 744 | 71.2 | Plus |
Dgri\GH20857-PA | 301 | GH20857-PA | 13..177 | 116..245 | 390 | 49.7 | Plus |
Dgri\GH20347-PA | 534 | GH20347-PA | 43..134 | 102..190 | 166 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Drep3-PA | 266 | CG8364-PA | 1..266 | 1..266 | 1364 | 100 | Plus |
Drep3-PB | 266 | CG8364-PB | 1..266 | 1..266 | 1364 | 100 | Plus |
Drep1-PA | 297 | CG8357-PA | 9..168 | 116..245 | 382 | 51.9 | Plus |
Drep1-PB | 306 | CG8357-PB | 9..168 | 116..245 | 382 | 51.9 | Plus |
Drep2-PB | 549 | CG1975-PB | 59..151 | 101..190 | 150 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20964-PA | 282 | GI20964-PA | 101..282 | 86..266 | 740 | 80.2 | Plus |
Dmoj\GI20962-PA | 286 | GI20962-PA | 12..168 | 116..245 | 405 | 54.1 | Plus |
Dmoj\GI20016-PA | 539 | GI20016-PA | 65..139 | 119..190 | 156 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17096-PA | 261 | GL17096-PA | 49..261 | 51..266 | 866 | 82.4 | Plus |
Dper\GL17094-PA | 311 | GL17094-PA | 13..180 | 119..245 | 370 | 48.5 | Plus |
Dper\GL17583-PA | 476 | GL17583-PA | 10..84 | 119..190 | 156 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21021-PA | 261 | GA21021-PA | 21..261 | 20..266 | 875 | 75.7 | Plus |
Dpse\GA21015-PA | 310 | GA21015-PA | 13..180 | 119..245 | 370 | 48.5 | Plus |
Dpse\GA15166-PA | 476 | GA15166-PA | 10..84 | 119..190 | 156 | 44 | Plus |
Dpse\GA15166-PB | 539 | GA15166-PB | 73..147 | 119..190 | 156 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21330-PA | 258 | GM21330-PA | 1..258 | 4..266 | 1044 | 94.3 | Plus |
Dsec\GM21329-PA | 326 | GM21329-PA | 9..168 | 116..245 | 398 | 52.5 | Plus |
Dsec\GM21115-PA | 387 | GM21115-PA | 10..84 | 119..190 | 155 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10838-PA | 258 | GD10838-PA | 1..258 | 4..266 | 1294 | 95.1 | Plus |
Dsim\GD10836-PA | 297 | GD10836-PA | 9..168 | 116..245 | 401 | 52.5 | Plus |
Dsim\GD10649-PA | 481 | GD10649-PA | 10..84 | 119..190 | 156 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20685-PA | 252 | GJ20685-PA | 75..252 | 86..266 | 744 | 80.1 | Plus |
Dvir\GJ20683-PA | 288 | GJ20683-PA | 11..167 | 116..245 | 398 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21340-PA | 257 | GK21340-PA | 12..257 | 38..266 | 771 | 66.3 | Plus |
Dwil\GK21339-PA | 316 | GK21339-PA | 17..191 | 119..245 | 370 | 46.4 | Plus |
Dwil\GK19508-PA | 466 | GK19508-PA | 8..84 | 117..190 | 156 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12403-PA | 270 | GE12403-PA | 1..270 | 4..266 | 1066 | 88.9 | Plus |
Dyak\GE12400-PA | 297 | GE12400-PA | 9..168 | 116..245 | 400 | 52.5 | Plus |
Dyak\GE19270-PA | 481 | GE19270-PA | 10..84 | 119..190 | 156 | 44 | Plus |
Translation from 178 to 978
> RH09855.hyp MTAMNADETKLAGMPQGAEEEQEPEREQKKESDGAAAAAGVQCDPDSRIV APPPRQRTLTRTAELDADCEDIELDADDGLDDAADSITLELALSPHSSAT PTPSPTTADEDFAQLDNSKPFKIKDITRNIRKAVVATTLSELRTKVSLKF ERAQPAIHLDCDGTEVDDEEYFSTLEPNAELIAVFPGEQWRDPSDYNANL RRTSLDAQRLRSLVSKLQPNYMNDDDLDKLSNMDPNSLVDITGREPKDNE YSARSDAARLSTELSC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Drep-3-PA | 266 | CG8364-PA | 1..266 | 1..266 | 1364 | 100 | Plus |
Drep-3-PB | 266 | CG8364-PB | 1..266 | 1..266 | 1364 | 100 | Plus |
Drep-1-PA | 297 | CG8357-PA | 9..168 | 116..245 | 382 | 51.9 | Plus |
Drep-1-PB | 306 | CG8357-PB | 9..168 | 116..245 | 382 | 51.9 | Plus |
Drep-2-PB | 549 | CG1975-PB | 59..151 | 101..190 | 150 | 38.7 | Plus |