BDGP Sequence Production Resources |
Search the DGRC for RH09920
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 99 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1319-RB |
Protein status: | RH09920.pep: gold |
Preliminary Size: | 477 |
Sequenced Size: | 864 |
Gene | Date | Evidence |
---|---|---|
CG1319 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1319 | 2002-05-18 | Blastp of sequenced clone |
CG1319 | 2008-04-29 | Release 5.5 accounting |
CG1319 | 2008-08-15 | Release 5.9 accounting |
CG1319 | 2008-12-18 | 5.12 accounting |
864 bp (864 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119160
> RH09920.complete GACACACACAACTTCACGTTTAACAAAATTTAATTGATTTCCTTATTATT TAACAACCGATCGCAGCGACACGAGTGGGTGCGTGTTGTCAGTTATAGTA AGAGATTGCAAAGGAATCCTAACCAGAATGCTAGTCATAAACTCATGCAG AGCTGCCTCCAGATTGGCGCTACGCAGCCTCAATTTGCGATCGCCGATCG CAACGCGTACTTTCTCGACGGGATTGGCCCTGAAAACGAAAGATGTTGTT AACATAACCTTCGTGCGTGCCAATGGGGACAAGATTAAGACGTCCGGAAA AGTGGGTGACTCCCTGCTGGACGTGGTGGTCAACAACAATGTGGATCTGG ATGGTTTCGGGGCCTGTGAGGGCACGCTGACCTGCTCCACCTGCCACCTG ATCTTCAAGACCAGCGATTTCGAGAAACTGCCCGACAAACCCGGTGATGA GGAGCTGGACATGCTGGATTTGGCGTACGAACTGACGGACACCTCGCGGC TGGGCTGCCAGATCACCCTGTCCAAGGATATGGAGGGCCTGGAGGTACAT GTGCCCTCCACCATCAATGACGCACGTGCCGCGTAGATAGACACCACCAC TGTTATCAATTGTTACAAATTTGAGTGCTAATTCGCTTTAGTTCAACCTA GATGTAGTCAATATTTTTGAACGAAATCGTATGTATTGTCCCAGGGACAC AAACCTCAGGCGGCTATAATGGATGCGCGCATTAATCCGATTCCAGTTGC GGATTAGCGTCCGCTGTTGTTTTTAAAGTGTTTAAGCTCAAAGGGATTAG ATCAATATGTAAATAAGTGTGTTGCAATAAATTTACATGTATTTTCGCAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1319-RB | 955 | CG1319-RB | 107..951 | 3..847 | 4225 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 4291883..4292128 | 1..246 | 99 | -> | Plus |
chr3L | 4292217..4292817 | 247..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RA | 1..102 | 145..246 | 100 | -> | Plus |
CG1319-RA | 138..477 | 247..586 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RB | 1..459 | 128..586 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RB | 1..459 | 128..586 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RA | 1..102 | 145..246 | 100 | -> | Plus |
CG1319-RA | 138..477 | 247..586 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RB | 1..459 | 128..586 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RA | 1..246 | 1..246 | 99 | -> | Plus |
CG1319-RA | 282..882 | 247..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RB | 1..847 | 1..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RB | 16..862 | 1..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RA | 1..246 | 1..246 | 99 | -> | Plus |
CG1319-RA | 282..882 | 247..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1319-RB | 16..862 | 1..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4292497..4292742 | 1..246 | 99 | -> | Plus |
3L | 4292831..4293431 | 247..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4292497..4292742 | 1..246 | 99 | -> | Plus |
3L | 4292831..4293431 | 247..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4292497..4292742 | 1..246 | 99 | -> | Plus |
3L | 4292831..4293431 | 247..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 4292497..4292742 | 1..246 | 99 | -> | Plus |
arm_3L | 4292831..4293431 | 247..848 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4292497..4292742 | 1..246 | 99 | -> | Plus |
3L | 4292831..4293431 | 247..848 | 99 | Plus |
Translation from 127 to 585
> RH09920.pep MLVINSCRAASRLALRSLNLRSPIATRTFSTGLALKTKDVVNITFVRANG DKIKTSGKVGDSLLDVVVNNNVDLDGFGACEGTLTCSTCHLIFKTSDFEK LPDKPGDEELDMLDLAYELTDTSRLGCQITLSKDMEGLEVHVPSTINDAR AA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25062-PA | 152 | GF25062-PA | 1..152 | 1..152 | 720 | 90.1 | Plus |
Dana\GF23741-PA | 172 | GF23741-PA | 55..157 | 39..144 | 237 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15219-PA | 152 | GG15219-PA | 1..152 | 1..152 | 776 | 98 | Plus |
Dere\GG14049-PA | 172 | GG14049-PA | 11..157 | 3..144 | 231 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16023-PA | 163 | GH16023-PA | 1..163 | 1..152 | 614 | 73 | Plus |
Dgri\GH16986-PA | 170 | GH16986-PA | 53..155 | 39..144 | 237 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fdx2-PB | 152 | CG1319-PB | 1..152 | 1..152 | 772 | 100 | Plus |
Fdx1-PB | 172 | CG4205-PB | 53..156 | 37..143 | 228 | 42.1 | Plus |
Fdx1-PA | 172 | CG4205-PA | 53..156 | 37..143 | 228 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12288-PA | 161 | GI12288-PA | 1..161 | 1..152 | 638 | 76.4 | Plus |
Dmoj\GI11398-PA | 170 | GI11398-PA | 53..155 | 39..144 | 236 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16335-PA | 158 | GL16335-PA | 1..158 | 1..152 | 690 | 85.4 | Plus |
Dper\GL22634-PA | 170 | GL22634-PA | 11..155 | 5..144 | 204 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12105-PA | 158 | GA12105-PA | 1..158 | 1..152 | 698 | 86.1 | Plus |
Dpse\GA24929-PA | 170 | GA24929-PA | 11..154 | 5..143 | 204 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14650-PA | 152 | GM14650-PA | 1..152 | 1..152 | 787 | 100 | Plus |
Dsec\GM24883-PA | 172 | GM24883-PA | 51..157 | 36..144 | 230 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13836-PA | 152 | GD13836-PA | 1..152 | 1..152 | 775 | 98.7 | Plus |
Dsim\GD12935-PA | 172 | GD12935-PA | 51..157 | 36..144 | 230 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13225-PA | 160 | GJ13225-PA | 1..160 | 1..152 | 638 | 76.2 | Plus |
Dvir\GJ13593-PA | 170 | GJ13593-PA | 53..155 | 39..144 | 233 | 43.4 | Plus |
Translation from 127 to 585
> RH09920.hyp MLVINSCRAASRLALRSLNLRSPIATRTFSTGLALKTKDVVNITFVRANG DKIKTSGKVGDSLLDVVVNNNVDLDGFGACEGTLTCSTCHLIFKTSDFEK LPDKPGDEELDMLDLAYELTDTSRLGCQITLSKDMEGLEVHVPSTINDAR AA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1319-PB | 152 | CG1319-PB | 1..152 | 1..152 | 772 | 100 | Plus |
Fdxh-PB | 172 | CG4205-PB | 53..156 | 37..143 | 228 | 42.1 | Plus |
Fdxh-PA | 172 | CG4205-PA | 53..156 | 37..143 | 228 | 42.1 | Plus |