Clone RH10422 Report

Search the DGRC for RH10422

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:104
Well:22
Vector:pFlc-1
Associated Gene/TranscriptRab14-RA
Protein status:RH10422.pep: gold
Sequenced Size:895

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Rab14 2008-04-29 Release 5.5 accounting
Rab14 2008-04-29 Picked prior to 5.5
Rab14 2008-08-15 Release 5.9 accounting
Rab14 2008-12-18 5.12 accounting

Clone Sequence Records

RH10422.complete Sequence

895 bp assembled on 2007-09-25

GenBank Submission: BT031019

> RH10422.complete
GATTCTATATACTCAATGACTCTGCAATGTAATAATAATAATAATTTCGC
TTGCTTTTTAGGTCCCAACATGACTGCAGCGCCATACAACTACAACTATA
TCTTTAAATACATCATCATTGGTGACATGGGCGTGGGCAAGTCCTGCCTG
CTCCACCAGTTCACCGAGAAGAAATTCATGGCCAATTGTCCTCACACCAT
TGGCGTGGAGTTCGGCACACGCATCATTGAGGTGGACGACAAAAAGATCA
AGCTACAGATCTGGGACACAGCGGGTCAGGAGCGATTCAGGGCAGTGACA
CGCTCCTATTACCGTGGAGCAGCTGGTGCGCTGATGGTCTACGATATTAC
CAGGCGCTCCACGTACAATCACCTGAGCAGCTGGCTTACCGACACTCGCA
ATCTCACCAATCCCAGCACTGTGATCTTTCTCATTGGCAACAAATCGGAT
CTGGAGAGCACTCGGGAGGTTACCTACGAGGAGGCCAAGGAGTTTGCCGA
CGAGAACGGCCTAATGTTTCTCGAAGCGAGCGCTATGACTGGCCAGAATG
TGGAGGAGGCTTTTCTGGAGACCGCACGCAAGATTTACCAGAACATCCAG
GAGGGTCGGCTCGATCTGAACGCCTCCGAGTCCGGAGTTCAGCACAGGCC
ATCGCAGCCGTCGCGAACTTCGCTGAGTAGCGAGGCTACGGGCGCCAAGG
ATCAGTGCTCGTGCTAAATGAATGATGGAACCTAACTTTACGCAAAACCT
AGTTATACAAATCAACTTTTATTTTTAGCCGACTCGTAATCTACCGATGC
CCAAGCAAAAACCAATGTATGTAGTTAAATAATTCGATTAAGCATCAATG
TGTGAGCCAACAACAGCGACAGCAACCACAAAAAAAAAAAAAAAA

RH10422.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rab14-RC 1284 Rab14-RC 2..894 2..894 4465 100 Plus
Rab14-RA 1600 Rab14-RA 360..1193 61..894 4170 100 Plus
Rab14.a 1486 Rab14.a 247..1079 62..894 4165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14356806..14357146 540..879 1655 99.7 Plus
chr2L 23010047 chr2L 14356554..14356737 356..539 920 100 Plus
chr2L 23010047 chr2L 14356320..14356500 176..356 905 100 Plus
chr2L 23010047 chr2L 14356081..14356254 2..175 870 100 Plus
chr2R 21145070 chr2R 13461011..13461163 193..345 240 77.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14358006..14358360 540..894 1775 100 Plus
2L 23513712 2L 14357754..14357937 356..539 920 100 Plus
2L 23513712 2L 14357520..14357700 176..356 905 100 Plus
2L 23513712 2L 14357281..14357454 2..175 870 100 Plus
2R 25286936 2R 17573952..17574104 193..345 240 77.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14358006..14358360 540..894 1775 100 Plus
2L 23513712 2L 14357754..14357937 356..539 920 100 Plus
2L 23513712 2L 14357520..14357700 176..356 905 100 Plus
2L 23513712 2L 14357281..14357454 2..175 870 100 Plus
2R 25260384 2R 17575208..17575303 250..345 210 81.2 Plus
Blast to na_te.dros performed on 2019-03-16 13:20:06 has no hits.

RH10422.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:20:51 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14356080..14356254 1..175 99 -> Plus
chr2L 14356320..14356500 176..356 100 -> Plus
chr2L 14356555..14356737 357..539 100 -> Plus
chr2L 14356806..14357146 540..879 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:13 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RC 1..702 16..717 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:55 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RC 1..702 16..717 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:00:07 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RB 65..720 62..717 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:12 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RC 1..702 16..717 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:12:21 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RB 65..720 62..717 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:03:04 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RC 2..879 2..879 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:55 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RC 2..879 2..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:07 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RD 1..878 2..879 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:12 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RC 2..879 2..879 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:21 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
Rab14-RD 1..878 2..879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:51 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14357280..14357454 1..175 99 -> Plus
2L 14357520..14357700 176..356 100 -> Plus
2L 14357755..14357937 357..539 100 -> Plus
2L 14358006..14358345 540..879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:51 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14357280..14357454 1..175 99 -> Plus
2L 14357520..14357700 176..356 100 -> Plus
2L 14357755..14357937 357..539 100 -> Plus
2L 14358006..14358345 540..879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:51 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14357280..14357454 1..175 99 -> Plus
2L 14357520..14357700 176..356 100 -> Plus
2L 14357755..14357937 357..539 100 -> Plus
2L 14358006..14358345 540..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:07 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14357755..14357937 357..539 100 -> Plus
arm_2L 14357280..14357454 1..175 99 -> Plus
arm_2L 14357520..14357700 176..356 100 -> Plus
arm_2L 14358006..14358345 540..879 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:59:13 Download gff for RH10422.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14358006..14358345 540..879 100   Plus
2L 14357280..14357454 1..175 99 -> Plus
2L 14357520..14357700 176..356 100 -> Plus
2L 14357755..14357937 357..539 100 -> Plus

RH10422.hyp Sequence

Translation from 0 to 716

> RH10422.hyp
YSIYSMTLQCNNNNNFACFLGPNMTAAPYNYNYIFKYIIIGDMGVGKSCL
LHQFTEKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQERFRAVT
RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSD
LESTREVTYEEAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQ
EGRLDLNASESGVQHRPSQPSRTSLSSEATGAKDQCSC*

RH10422.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab14-PB 239 CG4212-PB 23..239 22..238 1130 100 Plus
Rab14-PD 215 CG4212-PD 1..215 24..238 1117 100 Plus
Rab14-PA 215 CG4212-PA 1..215 24..238 1117 100 Plus
Rab2-PB 213 CG3269-PB 2..212 30..236 648 60.2 Plus
Rab2-PA 213 CG3269-PA 2..212 30..236 648 60.2 Plus

RH10422.pep Sequence

Translation from 15 to 716

> RH10422.pep
MTLQCNNNNNFACFLGPNMTAAPYNYNYIFKYIIIGDMGVGKSCLLHQFT
EKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQERFRAVTRSYYR
GAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTR
EVTYEEAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQEGRLD
LNASESGVQHRPSQPSRTSLSSEATGAKDQCSC*

RH10422.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14883-PA 239 GF14883-PA 23..239 17..233 1178 100 Plus
Dana\GF11067-PA 213 GF11067-PA 2..197 25..216 664 63.3 Plus
Dana\GF11646-PA 213 GF11646-PA 5..211 26..233 618 55.8 Plus
Dana\GF10843-PA 207 GF10843-PA 5..196 26..218 438 44 Plus
Dana\GF17263-PA 205 GF17263-PA 1..202 19..218 430 43.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23219-PA 213 GG23219-PA 2..197 25..216 664 63.3 Plus
Dere\GG21802-PA 213 GG21802-PA 5..211 26..233 618 55.8 Plus
Dere\GG24366-PA 214 GG24366-PA 1..212 19..231 488 47.2 Plus
Dere\GG13365-PA 207 GG13365-PA 5..196 26..218 438 44 Plus
Dere\GG14761-PA 205 GG14761-PA 1..202 19..218 427 43.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11344-PA 243 GH11344-PA 27..243 17..233 1158 98.2 Plus
Dgri\GH21751-PA 213 GH21751-PA 2..213 25..233 656 59.6 Plus
Dgri\GH20926-PA 213 GH20926-PA 5..211 26..233 618 55.8 Plus
Dgri\GH18257-PA 214 GH18257-PA 1..212 19..231 488 47.2 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..206 26..220 430 42.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rab14-PB 239 CG4212-PB 23..239 17..233 1130 100 Plus
Rab14-PD 215 CG4212-PD 1..215 19..233 1117 100 Plus
Rab14-PA 215 CG4212-PA 1..215 19..233 1117 100 Plus
Rab2-PB 213 CG3269-PB 2..212 25..231 648 60.2 Plus
Rab2-PA 213 CG3269-PA 2..212 25..231 648 60.2 Plus
Rab4-PA 213 CG4921-PA 5..211 26..233 598 55.8 Plus
Rab4-PB 213 CG4921-PB 5..211 26..233 598 55.8 Plus
Rab11-PA 214 CG5771-PA 1..181 19..199 478 51.9 Plus
Rab11-PB 214 CG5771-PB 1..181 19..199 478 51.9 Plus
Rab8-PC 207 CG8287-PC 5..196 26..218 428 44 Plus
Rab8-PA 207 CG8287-PA 5..196 26..218 428 44 Plus
Rab1-PA 205 CG3320-PA 1..176 19..194 416 46 Plus
Rab39-PB 218 CG12156-PB 6..201 26..216 412 43.9 Plus
Rab39-PA 218 CG12156-PA 6..201 26..216 412 43.9 Plus
Rab19-PB 219 CG7062-PP3-RB 17..177 25..183 406 46.6 Plus
Rab19-PA 219 CG7062-PA 17..177 25..183 406 46.6 Plus
Rab30-PD 223 CG9100-PD 3..208 25..231 393 39.4 Plus
Rab30-PC 223 CG9100-PC 3..208 25..231 393 39.4 Plus
Rab30-PB 223 CG9100-PB 3..208 25..231 393 39.4 Plus
Rab30-PA 223 CG9100-PA 3..208 25..231 393 39.4 Plus
RabX4-PA 213 CG31118-PA 9..213 30..233 390 37.1 Plus
Rab10-PA 204 CG17060-PA 2..170 22..190 389 43.2 Plus
Rab9Fb-PA 214 CG32670-PA 4..213 26..233 382 36.5 Plus
Rab5-PI 219 CG3664-PI 19..193 17..193 382 41.8 Plus
Rab5-PH 219 CG3664-PH 19..193 17..193 382 41.8 Plus
Rab5-PG 219 CG3664-PG 19..193 17..193 382 41.8 Plus
Rab5-PE 219 CG3664-PE 19..193 17..193 382 41.8 Plus
Rab5-PC 219 CG3664-PC 19..193 17..193 382 41.8 Plus
Rab5-PD 219 CG3664-PD 19..193 17..193 382 41.8 Plus
Rab5-PF 219 CG3664-PF 19..193 17..193 382 41.8 Plus
Rab5-PB 219 CG3664-PB 19..193 17..193 382 41.8 Plus
Rab5-PA 219 CG3664-PA 19..193 17..193 382 41.8 Plus
Rab3-PB 220 CG7576-PB 13..175 21..183 371 38.7 Plus
Rab3-PA 220 CG7576-PA 13..175 21..183 371 38.7 Plus
Rab26-PE 410 CG34410-PE 209..391 26..202 365 39.3 Plus
Rab26-PD 410 CG34410-PD 209..391 26..202 365 39.3 Plus
Rab26-PC 410 CG34410-PC 209..391 26..202 365 39.3 Plus
Rab26-PG 388 CG34410-PG 179..369 18..202 355 37.7 Plus
Rab26-PB 388 CG34410-PB 179..369 18..202 355 37.7 Plus
Rab35-PB 201 CG9575-PB 5..168 26..190 346 40.6 Plus
Rab35-PD 201 CG9575-PD 5..168 26..190 346 40.6 Plus
Rab35-PA 201 CG9575-PA 5..168 26..190 346 40.6 Plus
RabX2-PA 195 CG2885-PA 3..169 25..191 341 37.1 Plus
Rab18-PA 197 CG3129-PA 7..165 31..190 333 42.9 Plus
Rab6-PB 208 CG6601-PB 13..170 30..187 332 39.2 Plus
Rab6-PA 208 CG6601-PA 13..170 30..187 332 39.2 Plus
Rab8-PB 172 CG8287-PB 7..161 63..218 328 42.9 Plus
Rab27-PC 230 CG14791-PC 1..182 19..195 328 35.7 Plus
Rab21-PC 222 CG17515-PC 14..219 30..233 318 35.1 Plus
Rab21-PD 222 CG17515-PD 14..219 30..233 318 35.1 Plus
RabX1-PA 261 CG3870-PA 7..176 31..198 315 39.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12880-PA 243 GI12880-PA 27..243 17..233 1162 99.1 Plus
Dmoj\GI19298-PA 213 GI19298-PA 2..197 25..216 651 62.2 Plus
Dmoj\GI18364-PA 213 GI18364-PA 5..211 26..233 616 55.8 Plus
Dmoj\GI23656-PA 214 GI23656-PA 1..212 19..231 488 47.2 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..206 26..220 430 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21269-PA 239 GL21269-PA 23..239 17..233 1156 98.2 Plus
Dper\GL11116-PA 213 GL11116-PA 2..197 25..216 664 63.3 Plus
Dper\GL11470-PA 213 GL11470-PA 5..211 26..233 618 55.8 Plus
Dper\GL21786-PA 214 GL21786-PA 1..212 19..231 488 47.2 Plus
Dper\GL15675-PA 207 GL15675-PA 5..196 26..218 438 44 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18036-PA 239 GA18036-PA 23..239 17..233 1156 98.2 Plus
Dpse\GA17076-PA 213 GA17076-PA 2..197 25..216 664 63.3 Plus
Dpse\GA18527-PA 213 GA18527-PA 5..211 26..233 618 55.8 Plus
Dpse\GA19116-PA 214 GA19116-PA 1..212 19..231 488 47.2 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..196 26..218 438 44 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15560-PA 239 GM15560-PA 23..239 17..233 1177 100 Plus
Dsec\GM20894-PA 200 GM20894-PA 2..198 25..222 644 62.1 Plus
Dsec\GM21805-PA 213 GM21805-PA 5..211 26..233 618 55.8 Plus
Dsec\GM15065-PA 214 GM15065-PA 1..212 19..231 488 47.2 Plus
Dsec\GM15893-PA 207 GM15893-PA 5..196 26..218 438 44 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23961-PA 239 GD23961-PA 23..239 17..233 1159 98.6 Plus
Dsim\GD10420-PA 213 GD10420-PA 2..197 25..216 664 63.3 Plus
Dsim\GD11294-PA 213 GD11294-PA 5..211 26..233 618 55.8 Plus
Dsim\GD19397-PA 198 GD19397-PA 1..165 19..183 478 55.8 Plus
Dsim\GD12244-PA 207 GD12244-PA 5..196 26..218 438 44 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18183-PA 236 GJ18183-PA 20..236 17..233 1163 99.1 Plus
Dvir\GJ22175-PA 213 GJ22175-PA 2..213 25..233 656 59.6 Plus
Dvir\GJ21435-PA 213 GJ21435-PA 5..211 26..233 617 55.8 Plus
Dvir\GJ23499-PA 214 GJ23499-PA 1..212 19..231 488 47.2 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..206 26..220 430 42.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18273-PA 243 GK18273-PA 27..243 17..233 1150 97.2 Plus
Dwil\GK23088-PA 213 GK23088-PA 2..197 25..216 664 63.3 Plus
Dwil\GK10719-PA 213 GK10719-PA 5..211 26..233 618 55.8 Plus
Dwil\GK14185-PA 214 GK14185-PA 1..212 19..231 487 47.2 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..202 26..221 433 43.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19031-PA 239 GE19031-PA 23..239 17..233 1177 100 Plus
Dyak\GE19072-PA 213 GE19072-PA 2..197 25..216 664 63.3 Plus
Dyak\GE11879-PA 213 GE11879-PA 5..211 26..233 618 55.8 Plus
Dyak\GE25707-PA 288 GE25707-PA 86..286 30..231 460 46.8 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..196 26..218 438 44 Plus
Dyak\GE25707-PA 288 GE25707-PA 1..55 19..73 148 54.5 Plus