Clone RH10518 Report

Search the DGRC for RH10518

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:105
Well:18
Vector:pFlc-1
Associated Gene/Transcriptmiple-RA
Protein status:RH10518.pep: gold
Preliminary Size:855
Sequenced Size:1916

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1221 2001-12-17 Blastp of sequenced clone
CG1221 2002-01-01 Sim4 clustering to Release 2
CG1221 2003-01-01 Sim4 clustering to Release 3
miple 2008-04-29 Release 5.5 accounting
miple 2008-08-15 Release 5.9 accounting
miple 2008-12-18 5.12 accounting

Clone Sequence Records

RH10518.complete Sequence

1916 bp (1916 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071689

> RH10518.complete
GATTCAGTTTCGAAGAGTCGTGCAACGAGAGCAGTTGAAACCATTGTCTT
TAAACAAATTCTGCGCTGTGTCTGAGTCTGGAGTTTTTCTGTGTGTATAA
CTTACGTGGGCAGCAGCAGAAGTCGCACCATGAGAATTAATTGCAACGCG
CTTTTCCTGGCATCGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGT
ACTGGGCACCACAGAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGG
AGCAGACGCAGCCCACTACAGCCATACAAGGAGAAGTATGGGAGGAGGAC
GATCACGAAGTGCTTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCT
GTCTTGTCGATATGGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCA
ATACGCGTTCAAGAACATTGACATTAAAGAAGGGCGACCCGGCATGCGAC
CAAACGCGAACCATTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAA
GGGATCTTGGTCGGAATGTGCAACCGGACAAATGACTAGAGCTGATAAGT
TGAAAGCGAGCAGTGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAG
AACTGCAAGCCCGGAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAA
GAACAAAGATAAAGCTGCTCGCAAAGGACGCGTTTAAGTGATATCGAACT
CGATTATTTTAAATTCCAGTGTTATTTTGTTTGACTCCAATGCAAATAAC
TATAATTGATTTTTTTAATTCAAAACTGAAAAATCGTAACGACGTTAACT
GTCTGCTATGTATACCCAAAGGCATTTAAATAAAATGCACACATTAATTA
ATGTTGTAGTTTGATTTACAAGCAAACGAAACGATAACCATAATATAAAC
GAAAGCTGTACGACGTAATAGAAACCTTGCGGAGTCTAAAATATGTATGC
AATGCAGAATAAGATATATTCATACAATACCATACCATACCGACATAAAT
ACCGACTTATTTAGTTTATTACCCAATGAAAATCATATGTACATCCAAGC
CAACACCTATTACCATTTTATCTGAAATGATGAAATCTGTAAGGGCAGTT
GCCGTATTGAAATAAAGGATAATTCTTAAATACAGCCTCCTAGACTGCGT
GGCTGTTGGGTCCCCTTCATACACTTAGCAGAGTTGTTCTTCAATGGAAT
TTAAATAATATTAACCGTAAAATCGGAATGAAACCCAAATAAATAAGATA
TACTGAAAACATTTTTTCATTCACAGCTAACAAATAAATAAAACACTTAG
TGTAAATATTGTAAAAATAATGACATACTGTAGAGGAAAAATTTCTGAAA
GACGAAGAATGAGACGCGACGGTCTAAACACAGATCCATCGTAGTTGCAG
TGTAGGCAATTGGCATTTTAAAGTAGTTTACAACTCACTTCTACCGGGTA
CAATTAACATATAAATTTGGAAGTATGATTCCCAAAACTAATATACAAGT
CGAAATGCAGACATACTTACATACTTACATTCATATATATTCTGATCAAA
AACTTACCATTTCAAAGATGTGGTTTATCTTTTTAATAAACACGTACATA
TATAAACTTAGAGCGTTAACTACGAATTAATGTATCTATCTGTAAGCAGT
TTTACAACCATACCCGTGCATTCACAACTACGAACGACGAAGTCGAGGAG
AACAACAGCTCAGTCACAGCATTCAAATTCATAGTATGAATTTTATACAC
ATCATCCGTAGGGGCAGTTATCTTCTTTAAGTCTTTGAATTCCGTAAGGA
ACAGCATGAAAGCGACTCCCCCAAAGGGAAGTGAAGTTTGTTTACGTACG
TATACAACACAAGAAAAAGTAAATGAACTTTAATAAATACAGATATTACG
AAAAAAAAAAAAAAAA

RH10518.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
miple.b 2381 miple.b 32..1938 2..1908 9505 99.8 Plus
miple-RA 2055 miple-RA 32..1938 2..1908 9505 99.8 Plus
miple.a 1895 miple.a 106..1895 119..1908 8920 99.8 Plus
miple.a 1895 miple.a 2..106 2..106 525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 269049..270286 663..1900 6175 99.9 Plus
chr3L 24539361 chr3L 268173..268415 106..348 1215 100 Plus
chr3L 24539361 chr3L 268733..268914 483..664 910 100 Plus
chr3L 24539361 chr3L 268516..268654 346..484 695 100 Plus
chr3L 24539361 chr3L 267719..267823 2..106 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 269095..270340 663..1908 6200 99.8 Plus
3L 28110227 3L 268219..268461 106..348 1215 100 Plus
3L 28110227 3L 268779..268960 483..664 910 100 Plus
3L 28110227 3L 268562..268700 346..484 695 100 Plus
3L 28110227 3L 267765..267869 2..106 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 269095..270340 663..1908 6200 99.8 Plus
3L 28103327 3L 268219..268461 106..348 1215 100 Plus
3L 28103327 3L 268779..268960 483..664 910 100 Plus
3L 28103327 3L 268562..268700 346..484 695 100 Plus
3L 28103327 3L 267765..267869 2..106 525 100 Plus
Blast to na_te.dros performed 2019-03-16 15:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 6839..6994 857..703 162 63.4 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 686..810 1198..1327 143 61.4 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 537..623 1273..1358 117 62.5 Plus
TAHRE 10463 TAHRE OSV 10463bp 2618..2688 388..452 116 67.6 Plus
blood 7410 blood BLOOD 7410bp 5406..5492 1612..1525 113 60.2 Minus

RH10518.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:27:04 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 267718..267823 1..106 99 -> Plus
chr3L 268174..268413 107..346 100 -> Plus
chr3L 268517..268654 347..484 100 -> Plus
chr3L 268735..268914 485..664 100 -> Plus
chr3L 269051..270286 665..1900 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:14 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RB 1..558 130..687 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:00:33 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RB 1..558 130..687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:10:14 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 1..558 130..687 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:12 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RB 1..558 130..687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:36 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 1..558 130..687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:26:36 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 2..1900 2..1900 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:00:33 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 2..1900 2..1900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:14 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 2..1900 2..1900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:13 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 2..1900 2..1900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:36 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 2..1900 2..1900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:27:04 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
3L 267764..267869 1..106 99 -> Plus
3L 268220..268459 107..346 100 -> Plus
3L 268563..268700 347..484 100 -> Plus
3L 268781..268960 485..664 100 -> Plus
3L 269097..270332 665..1900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:27:04 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
3L 267764..267869 1..106 99 -> Plus
3L 268220..268459 107..346 100 -> Plus
3L 268563..268700 347..484 100 -> Plus
3L 268781..268960 485..664 100 -> Plus
3L 269097..270332 665..1900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:27:04 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
3L 267764..267869 1..106 99 -> Plus
3L 268220..268459 107..346 100 -> Plus
3L 268563..268700 347..484 100 -> Plus
3L 268781..268960 485..664 100 -> Plus
3L 269097..270332 665..1900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:14 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 268220..268459 107..346 100 -> Plus
arm_3L 267764..267869 1..106 99 -> Plus
arm_3L 268563..268700 347..484 100 -> Plus
arm_3L 268781..268960 485..664 100 -> Plus
arm_3L 269097..270332 665..1900 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:00:38 Download gff for RH10518.complete
Subject Subject Range Query Range Percent Splice Strand
3L 268220..268459 107..346 100 -> Plus
3L 268563..268700 347..484 100 -> Plus
3L 268781..268960 485..664 100 -> Plus
3L 269097..270332 665..1900 99   Plus
3L 267764..267869 1..106 99 -> Plus

RH10518.pep Sequence

Translation from 129 to 686

> RH10518.pep
MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ
GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK
KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE
ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRV*

RH10518.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25044-PA 185 GF25044-PA 1..185 1..185 924 94.6 Plus
Dana\GF25045-PA 284 GF25045-PA 158..279 75..182 289 50.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14710-PA 185 GG14710-PA 1..185 1..185 963 99.5 Plus
Dere\GG14711-PA 277 GG14711-PA 150..275 69..185 287 49.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15738-PA 185 GH15738-PA 1..185 1..185 860 87.6 Plus
Dgri\GH15739-PA 262 GH15739-PA 145..236 75..162 320 66.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
miple1-PC 185 CG1221-PC 1..185 1..185 989 100 Plus
miple1-PB 185 CG1221-PB 1..185 1..185 989 100 Plus
miple1-PA 185 CG1221-PA 1..185 1..185 989 100 Plus
miple2-PE 281 CG18321-PE 152..279 69..185 312 47.7 Plus
miple2-PG 279 CG18321-PG 152..274 69..180 310 49.6 Plus
miple2-PF 279 CG18321-PF 152..274 69..180 310 49.6 Plus
miple2-PA 279 CG18321-PA 152..274 69..180 310 49.6 Plus
miple2-PD 282 CG18321-PD 152..277 69..180 296 48.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12795-PA 185 GI12795-PA 1..185 1..185 831 85.9 Plus
Dmoj\GI12796-PA 294 GI12796-PA 169..288 70..181 306 53.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16124-PA 173 GL16124-PA 1..131 1..132 618 87.9 Plus
Dper\GL16125-PA 226 GL16125-PA 162..217 75..130 205 62.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11479-PA 184 GA11479-PA 1..184 1..185 882 91.4 Plus
Dpse\GA14888-PA 286 GA14888-PA 162..277 75..179 279 52.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14326-PA 185 GM14326-PA 1..185 1..185 969 100 Plus
Dsec\GM14327-PA 281 GM14327-PA 154..279 69..185 286 48.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11006-PA 185 GD11006-PA 1..185 1..185 969 100 Plus
Dsim\GD11007-PA 281 GD11007-PA 154..279 69..185 286 48.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16094-PA 185 GJ16094-PA 1..185 1..185 869 88.1 Plus
Dvir\GJ16095-PA 294 GJ16095-PA 145..255 69..176 315 56.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16543-PA 185 GK16543-PA 1..185 1..185 887 90.3 Plus
Dwil\GK16544-PA 285 GK16544-PA 164..280 75..182 284 48.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21073-PA 185 GE21073-PA 1..185 1..185 963 99.5 Plus
Dyak\GE21074-PA 275 GE21074-PA 148..273 69..185 278 47.7 Plus

RH10518.hyp Sequence

Translation from 129 to 686

> RH10518.hyp
MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ
GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK
KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE
ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRV*

RH10518.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
miple-PC 185 CG1221-PC 1..185 1..185 989 100 Plus
miple-PB 185 CG1221-PB 1..185 1..185 989 100 Plus
miple-PA 185 CG1221-PA 1..185 1..185 989 100 Plus
miple2-PE 281 CG18321-PE 152..279 69..185 312 47.7 Plus
miple2-PG 279 CG18321-PG 152..274 69..180 310 49.6 Plus