BDGP Sequence Production Resources |
Search the DGRC for RH10518
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 105 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | miple-RA |
Protein status: | RH10518.pep: gold |
Preliminary Size: | 855 |
Sequenced Size: | 1916 |
Gene | Date | Evidence |
---|---|---|
CG1221 | 2001-12-17 | Blastp of sequenced clone |
CG1221 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1221 | 2003-01-01 | Sim4 clustering to Release 3 |
miple | 2008-04-29 | Release 5.5 accounting |
miple | 2008-08-15 | Release 5.9 accounting |
miple | 2008-12-18 | 5.12 accounting |
1916 bp (1916 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071689
> RH10518.complete GATTCAGTTTCGAAGAGTCGTGCAACGAGAGCAGTTGAAACCATTGTCTT TAAACAAATTCTGCGCTGTGTCTGAGTCTGGAGTTTTTCTGTGTGTATAA CTTACGTGGGCAGCAGCAGAAGTCGCACCATGAGAATTAATTGCAACGCG CTTTTCCTGGCATCGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGT ACTGGGCACCACAGAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGG AGCAGACGCAGCCCACTACAGCCATACAAGGAGAAGTATGGGAGGAGGAC GATCACGAAGTGCTTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCT GTCTTGTCGATATGGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCA ATACGCGTTCAAGAACATTGACATTAAAGAAGGGCGACCCGGCATGCGAC CAAACGCGAACCATTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAA GGGATCTTGGTCGGAATGTGCAACCGGACAAATGACTAGAGCTGATAAGT TGAAAGCGAGCAGTGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAG AACTGCAAGCCCGGAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAA GAACAAAGATAAAGCTGCTCGCAAAGGACGCGTTTAAGTGATATCGAACT CGATTATTTTAAATTCCAGTGTTATTTTGTTTGACTCCAATGCAAATAAC TATAATTGATTTTTTTAATTCAAAACTGAAAAATCGTAACGACGTTAACT GTCTGCTATGTATACCCAAAGGCATTTAAATAAAATGCACACATTAATTA ATGTTGTAGTTTGATTTACAAGCAAACGAAACGATAACCATAATATAAAC GAAAGCTGTACGACGTAATAGAAACCTTGCGGAGTCTAAAATATGTATGC AATGCAGAATAAGATATATTCATACAATACCATACCATACCGACATAAAT ACCGACTTATTTAGTTTATTACCCAATGAAAATCATATGTACATCCAAGC CAACACCTATTACCATTTTATCTGAAATGATGAAATCTGTAAGGGCAGTT GCCGTATTGAAATAAAGGATAATTCTTAAATACAGCCTCCTAGACTGCGT GGCTGTTGGGTCCCCTTCATACACTTAGCAGAGTTGTTCTTCAATGGAAT TTAAATAATATTAACCGTAAAATCGGAATGAAACCCAAATAAATAAGATA TACTGAAAACATTTTTTCATTCACAGCTAACAAATAAATAAAACACTTAG TGTAAATATTGTAAAAATAATGACATACTGTAGAGGAAAAATTTCTGAAA GACGAAGAATGAGACGCGACGGTCTAAACACAGATCCATCGTAGTTGCAG TGTAGGCAATTGGCATTTTAAAGTAGTTTACAACTCACTTCTACCGGGTA CAATTAACATATAAATTTGGAAGTATGATTCCCAAAACTAATATACAAGT CGAAATGCAGACATACTTACATACTTACATTCATATATATTCTGATCAAA AACTTACCATTTCAAAGATGTGGTTTATCTTTTTAATAAACACGTACATA TATAAACTTAGAGCGTTAACTACGAATTAATGTATCTATCTGTAAGCAGT TTTACAACCATACCCGTGCATTCACAACTACGAACGACGAAGTCGAGGAG AACAACAGCTCAGTCACAGCATTCAAATTCATAGTATGAATTTTATACAC ATCATCCGTAGGGGCAGTTATCTTCTTTAAGTCTTTGAATTCCGTAAGGA ACAGCATGAAAGCGACTCCCCCAAAGGGAAGTGAAGTTTGTTTACGTACG TATACAACACAAGAAAAAGTAAATGAACTTTAATAAATACAGATATTACG AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
miple.b | 2381 | miple.b | 32..1938 | 2..1908 | 9505 | 99.8 | Plus |
miple-RA | 2055 | miple-RA | 32..1938 | 2..1908 | 9505 | 99.8 | Plus |
miple.a | 1895 | miple.a | 106..1895 | 119..1908 | 8920 | 99.8 | Plus |
miple.a | 1895 | miple.a | 2..106 | 2..106 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 269049..270286 | 663..1900 | 6175 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 268173..268415 | 106..348 | 1215 | 100 | Plus |
chr3L | 24539361 | chr3L | 268733..268914 | 483..664 | 910 | 100 | Plus |
chr3L | 24539361 | chr3L | 268516..268654 | 346..484 | 695 | 100 | Plus |
chr3L | 24539361 | chr3L | 267719..267823 | 2..106 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 269095..270340 | 663..1908 | 6200 | 99.8 | Plus |
3L | 28110227 | 3L | 268219..268461 | 106..348 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 268779..268960 | 483..664 | 910 | 100 | Plus |
3L | 28110227 | 3L | 268562..268700 | 346..484 | 695 | 100 | Plus |
3L | 28110227 | 3L | 267765..267869 | 2..106 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 269095..270340 | 663..1908 | 6200 | 99.8 | Plus |
3L | 28103327 | 3L | 268219..268461 | 106..348 | 1215 | 100 | Plus |
3L | 28103327 | 3L | 268779..268960 | 483..664 | 910 | 100 | Plus |
3L | 28103327 | 3L | 268562..268700 | 346..484 | 695 | 100 | Plus |
3L | 28103327 | 3L | 267765..267869 | 2..106 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 6839..6994 | 857..703 | 162 | 63.4 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 686..810 | 1198..1327 | 143 | 61.4 | Plus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 537..623 | 1273..1358 | 117 | 62.5 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 2618..2688 | 388..452 | 116 | 67.6 | Plus |
blood | 7410 | blood BLOOD 7410bp | 5406..5492 | 1612..1525 | 113 | 60.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 267718..267823 | 1..106 | 99 | -> | Plus |
chr3L | 268174..268413 | 107..346 | 100 | -> | Plus |
chr3L | 268517..268654 | 347..484 | 100 | -> | Plus |
chr3L | 268735..268914 | 485..664 | 100 | -> | Plus |
chr3L | 269051..270286 | 665..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RB | 1..558 | 130..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RB | 1..558 | 130..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RA | 1..558 | 130..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RB | 1..558 | 130..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RA | 1..558 | 130..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RA | 2..1900 | 2..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RA | 2..1900 | 2..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RA | 2..1900 | 2..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RA | 2..1900 | 2..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
miple-RA | 2..1900 | 2..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 267764..267869 | 1..106 | 99 | -> | Plus |
3L | 268220..268459 | 107..346 | 100 | -> | Plus |
3L | 268563..268700 | 347..484 | 100 | -> | Plus |
3L | 268781..268960 | 485..664 | 100 | -> | Plus |
3L | 269097..270332 | 665..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 267764..267869 | 1..106 | 99 | -> | Plus |
3L | 268220..268459 | 107..346 | 100 | -> | Plus |
3L | 268563..268700 | 347..484 | 100 | -> | Plus |
3L | 268781..268960 | 485..664 | 100 | -> | Plus |
3L | 269097..270332 | 665..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 267764..267869 | 1..106 | 99 | -> | Plus |
3L | 268220..268459 | 107..346 | 100 | -> | Plus |
3L | 268563..268700 | 347..484 | 100 | -> | Plus |
3L | 268781..268960 | 485..664 | 100 | -> | Plus |
3L | 269097..270332 | 665..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 268220..268459 | 107..346 | 100 | -> | Plus |
arm_3L | 267764..267869 | 1..106 | 99 | -> | Plus |
arm_3L | 268563..268700 | 347..484 | 100 | -> | Plus |
arm_3L | 268781..268960 | 485..664 | 100 | -> | Plus |
arm_3L | 269097..270332 | 665..1900 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 268220..268459 | 107..346 | 100 | -> | Plus |
3L | 268563..268700 | 347..484 | 100 | -> | Plus |
3L | 268781..268960 | 485..664 | 100 | -> | Plus |
3L | 269097..270332 | 665..1900 | 99 | Plus | |
3L | 267764..267869 | 1..106 | 99 | -> | Plus |
Translation from 129 to 686
> RH10518.pep MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25044-PA | 185 | GF25044-PA | 1..185 | 1..185 | 924 | 94.6 | Plus |
Dana\GF25045-PA | 284 | GF25045-PA | 158..279 | 75..182 | 289 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14710-PA | 185 | GG14710-PA | 1..185 | 1..185 | 963 | 99.5 | Plus |
Dere\GG14711-PA | 277 | GG14711-PA | 150..275 | 69..185 | 287 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15738-PA | 185 | GH15738-PA | 1..185 | 1..185 | 860 | 87.6 | Plus |
Dgri\GH15739-PA | 262 | GH15739-PA | 145..236 | 75..162 | 320 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
miple1-PC | 185 | CG1221-PC | 1..185 | 1..185 | 989 | 100 | Plus |
miple1-PB | 185 | CG1221-PB | 1..185 | 1..185 | 989 | 100 | Plus |
miple1-PA | 185 | CG1221-PA | 1..185 | 1..185 | 989 | 100 | Plus |
miple2-PE | 281 | CG18321-PE | 152..279 | 69..185 | 312 | 47.7 | Plus |
miple2-PG | 279 | CG18321-PG | 152..274 | 69..180 | 310 | 49.6 | Plus |
miple2-PF | 279 | CG18321-PF | 152..274 | 69..180 | 310 | 49.6 | Plus |
miple2-PA | 279 | CG18321-PA | 152..274 | 69..180 | 310 | 49.6 | Plus |
miple2-PD | 282 | CG18321-PD | 152..277 | 69..180 | 296 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12795-PA | 185 | GI12795-PA | 1..185 | 1..185 | 831 | 85.9 | Plus |
Dmoj\GI12796-PA | 294 | GI12796-PA | 169..288 | 70..181 | 306 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16124-PA | 173 | GL16124-PA | 1..131 | 1..132 | 618 | 87.9 | Plus |
Dper\GL16125-PA | 226 | GL16125-PA | 162..217 | 75..130 | 205 | 62.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11479-PA | 184 | GA11479-PA | 1..184 | 1..185 | 882 | 91.4 | Plus |
Dpse\GA14888-PA | 286 | GA14888-PA | 162..277 | 75..179 | 279 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14326-PA | 185 | GM14326-PA | 1..185 | 1..185 | 969 | 100 | Plus |
Dsec\GM14327-PA | 281 | GM14327-PA | 154..279 | 69..185 | 286 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11006-PA | 185 | GD11006-PA | 1..185 | 1..185 | 969 | 100 | Plus |
Dsim\GD11007-PA | 281 | GD11007-PA | 154..279 | 69..185 | 286 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16094-PA | 185 | GJ16094-PA | 1..185 | 1..185 | 869 | 88.1 | Plus |
Dvir\GJ16095-PA | 294 | GJ16095-PA | 145..255 | 69..176 | 315 | 56.8 | Plus |
Translation from 129 to 686
> RH10518.hyp MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
miple-PC | 185 | CG1221-PC | 1..185 | 1..185 | 989 | 100 | Plus |
miple-PB | 185 | CG1221-PB | 1..185 | 1..185 | 989 | 100 | Plus |
miple-PA | 185 | CG1221-PA | 1..185 | 1..185 | 989 | 100 | Plus |
miple2-PE | 281 | CG18321-PE | 152..279 | 69..185 | 312 | 47.7 | Plus |
miple2-PG | 279 | CG18321-PG | 152..274 | 69..180 | 310 | 49.6 | Plus |