Clone RH10820 Report

Search the DGRC for RH10820

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:108
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG12170-RA
Protein status:RH10820.pep: gold
Preliminary Size:1322
Sequenced Size:1438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12170 2002-10-18 Blastp of sequenced clone
CG12170 2003-01-01 Sim4 clustering to Release 3
CG12170 2008-04-29 Release 5.5 accounting
CG12170 2008-08-15 Release 5.9 accounting
CG12170 2008-12-18 5.12 accounting

Clone Sequence Records

RH10820.complete Sequence

1438 bp (1438 high quality bases) assembled on 2002-10-18

GenBank Submission: BT001769

> RH10820.complete
GCTCTCACTTACGTGATCATGTAAACGAAATGCGAGTTTTAGGAAAGTGC
ACTGTTTTGGTCAGGCAAACCCGCAGCTTATCCACGCCATCTGGGCGCCG
CAGAGTGGTGGTCACGGGAAGTGGCGCAGTCACTCCGCTGGGCAACAATG
GACCGGATTCTTGGCGACGCATCCTGGCCGGCGAGTCGGCAATTTCTCGG
CTGAGTGCGGAGTTTAAGGGCTTGCCCTGCCAGGTTGCGGCTCAAATCCC
GAGGGAAAACCTACAGCTGGATCAACACCTGACCAAGTCGGACATTAAGC
TGATGAGCCCCGCCACGCAGCTTGCCGTATTGGCGGCTGAGGAGGCCTTG
TCAACCGGAAAGCTGTGCCCCAAGCAATTGAGCGAGGAGGAGCTTGAGCG
GTTCGGAGTGTGCGTGGGCATGGGCATGTTCGACCTTGCAGAGGTCTATG
GCGCCTGGAACCAGCTGCAACGAGGTTACAACAGAGTAAGCCCCTTTTTC
GTGCCCAGGCTGCTGCCCAGTATGGCGTGTGGTCACATAAGCATGCGACA
TGGCTTAAGAGGACCTAACCACTCGGTGTCCACGGCCTGCGCCACAGGTG
CCCATGCCCTGGGCGATGCCATGCGCTTCATTCGCAGCGGAGATGCCGAC
TTGATGCTGGCGGGGAGTGGTGAGGCCTGCATAGATCCGCTCTCCATCGC
TGGATTTTGCAGACTGCGGGCTCTGAGCACCGCATTCAACGATAATCCGG
CGGTTGCGTCCAGACCGTTTGACAAGTCCCGGGATGGCTTCGTGATGGGC
GAGGGCGCAGCTGTGCTCTTGCTGGAAGAACTGGAGCACGCCCGCGCTCG
GGGAGCTCCCATTCTAGCTGAGATTCTGGGCTACGGCTTGTCCGGCGATG
CCTATCACATAACGTCGCCCAGCGATGACGGCGCCGGAGCCACTCTTGCC
ATGAAGCGGGCCATACAAGATGCTGGGATTGCACCAGAGGATGTTACGTA
TGTAAATGCCCACGCAACCTCCACGCCCACCGGGGATCGCATTGAGTCAC
ACGCTATAGGTCGTGTTTTCGGGGCGCACACTCCGCAGGTGAGGGTCTCC
TCCACCAAGGGAGCACATGGCCACCTGCTGGGCTCCTCTGGCAACCTGGA
AGCGCTCTTTGTGGTGCTCGCCTGCGCGAATAACAAGCTGCCGCCCTCCA
TCAACATTGAGCACCTCGATGTGGACGTCAATGTGGTCACGAAAGCTACT
GATTGGTCGGCGGACCAAAAGCGGCGTGTTGCCCTCAAGAATTCCTTCGG
CTTTGGAGGAACCAATGCCTCCCTCTGCATTGCTAGCTACATTTAATAGT
AGCGATAAGTTGTTAACTATTTTTTAGAGATCCACGTAAATAAAATCCTT
GAATGTTTGCATATTTTTAGGAAAAAAAAAAAAAAAAA

RH10820.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12170-RA 1421 CG12170-RA 3..1421 3..1421 7095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1462897..1464315 3..1421 7095 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5637239..5638662 3..1426 7120 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5378070..5379493 3..1426 7120 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:20:37 has no hits.

RH10820.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:21:22 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1462895..1464315 1..1421 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:16 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1317 30..1346 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:10:08 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1317 30..1346 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:59 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1317 30..1346 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:01:00 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1317 30..1346 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:51 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1317 30..1346 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:31:17 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1421 1..1421 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:10:08 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1421 1..1421 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:59 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 4..1424 1..1421 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:01:00 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 1..1421 1..1421 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:51 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
CG12170-RA 4..1424 1..1421 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:22 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5637237..5638657 1..1421 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:22 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5637237..5638657 1..1421 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:22 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5637237..5638657 1..1421 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:59 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1462959..1464379 1..1421 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:35 Download gff for RH10820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5378068..5379488 1..1421 99   Plus

RH10820.hyp Sequence

Translation from 2 to 1345

> RH10820.hyp
SHLRDHVNEMRVLGKCTVLVRQTRSLSTPSGRRRVVVTGSGAVTPLGNNG
PDSWRRILAGESAISRLSAEFKGLPCQVAAQIPRENLQLDQHLTKSDIKL
MSPATQLAVLAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYG
AWNQLQRGYNRVSPFFVPRLLPSMACGHISMRHGLRGPNHSVSTACATGA
HALGDAMRFIRSGDADLMLAGSGEACIDPLSIAGFCRLRALSTAFNDNPA
VASRPFDKSRDGFVMGEGAAVLLLEELEHARARGAPILAEILGYGLSGDA
YHITSPSDDGAGATLAMKRAIQDAGIAPEDVTYVNAHATSTPTGDRIESH
AIGRVFGAHTPQVRVSSTKGAHGHLLGSSGNLEALFVVLACANNKLPPSI
NIEHLDVDVNVVTKATDWSADQKRRVALKNSFGFGGTNASLCIASYI*

RH10820.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12170-PA 438 CG12170-PA 1..438 10..447 2251 100 Plus
CG3523-PA 2438 CG3523-PA 82..444 73..445 266 25.8 Plus
CG3523-PC 2540 CG3523-PC 184..546 73..445 266 25.8 Plus
CG17374-PC 2394 CG17374-PC 92..424 101..446 254 27.7 Plus
v(2)k05816-PA 2409 CG3524-PA 19..426 35..446 251 22.7 Plus

RH10820.pep Sequence

Translation from 29 to 1345

> RH10820.pep
MRVLGKCTVLVRQTRSLSTPSGRRRVVVTGSGAVTPLGNNGPDSWRRILA
GESAISRLSAEFKGLPCQVAAQIPRENLQLDQHLTKSDIKLMSPATQLAV
LAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYGAWNQLQRGY
NRVSPFFVPRLLPSMACGHISMRHGLRGPNHSVSTACATGAHALGDAMRF
IRSGDADLMLAGSGEACIDPLSIAGFCRLRALSTAFNDNPAVASRPFDKS
RDGFVMGEGAAVLLLEELEHARARGAPILAEILGYGLSGDAYHITSPSDD
GAGATLAMKRAIQDAGIAPEDVTYVNAHATSTPTGDRIESHAIGRVFGAH
TPQVRVSSTKGAHGHLLGSSGNLEALFVVLACANNKLPPSINIEHLDVDV
NVVTKATDWSADQKRRVALKNSFGFGGTNASLCIASYI*

RH10820.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17575-PA 442 GF17575-PA 11..440 8..437 2006 87.2 Plus
Dana\GF17576-PA 442 GF17576-PA 11..440 8..437 2006 87.2 Plus
Dana\GF17574-PA 442 GF17574-PA 11..440 8..437 2006 87.2 Plus
Dana\GF14401-PA 2550 GF14401-PA 180..554 39..436 257 26.3 Plus
Dana\GF14400-PA 2411 GF14400-PA 19..426 26..437 224 23.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12975-PA 439 GG12975-PA 1..438 1..438 2248 96.3 Plus
Dere\GG24920-PA 2544 GG24920-PA 176..550 39..436 263 25.9 Plus
Dere\GG24919-PA 2409 GG24919-PA 19..426 26..437 232 23.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18374-PA 433 GH18374-PA 3..430 10..437 1826 81.1 Plus
Dgri\GH10963-PA 2433 GH10963-PA 38..444 24..436 256 24.9 Plus
Dgri\GH10962-PA 2427 GH10962-PA 24..432 25..437 241 23.8 Plus
Dgri\GH23527-PA 777 GH23527-PA 44..369 92..430 228 27.7 Plus
Dgri\GH20680-PA 2346 GH20680-PA 44..369 92..430 226 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12170-PA 438 CG12170-PA 1..438 1..438 2251 100 Plus
FASN1-PA 2438 CG3523-PA 82..444 64..436 266 25.8 Plus
FASN1-PC 2540 CG3523-PC 184..546 64..436 266 25.8 Plus
FASN3-PC 2394 CG17374-PC 92..424 92..437 254 27.7 Plus
FASN2-PA 2409 CG3524-PA 19..426 26..437 251 22.7 Plus
FASN2-PB 2410 CG3524-PB 19..426 26..437 251 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23365-PA 434 GI23365-PA 3..431 10..437 1899 83.7 Plus
Dmoj\GI10520-PA 2433 GI10520-PA 38..444 24..436 261 24.9 Plus
Dmoj\GI23207-PA 2395 GI23207-PA 92..424 92..437 246 26.9 Plus
Dmoj\GI10509-PA 2419 GI10509-PA 24..431 26..437 241 24.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24388-PA 432 GL24388-PA 1..429 1..437 1813 81.2 Plus
Dper\GL18554-PA 2603 GL18554-PA 194..604 20..436 259 24.7 Plus
Dper\GL18551-PA 480 GL18551-PA 20..427 26..437 246 24.7 Plus
Dper\GL12292-PA 1975 GL12292-PA 44..376 92..437 237 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26596-PA 440 GA26596-PA 1..437 1..437 1970 86.3 Plus
Dpse\GA17497-PA 2603 GA17497-PA 194..604 20..436 259 24.7 Plus
Dpse\GA17498-PA 2410 GA17498-PA 20..427 26..437 247 24 Plus
Dpse\GA26263-PB 2367 GA26263-PB 95..427 92..437 236 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10827-PA 439 GM10827-PA 1..438 1..438 2268 97.5 Plus
Dsec\GM18393-PA 3089 GM18393-PA 721..1095 39..436 260 25.7 Plus
Dsec\GM18393-PA 3089 GM18393-PA 19..426 26..437 238 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19804-PA 439 GD19804-PA 1..438 1..438 2268 97.5 Plus
Dsim\GD23207-PA 2529 GD23207-PA 177..551 39..436 260 25.7 Plus
Dsim\GD23205-PA 1642 GD23205-PA 19..350 26..365 195 23.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10359-PA 433 GJ10359-PA 3..430 10..437 1883 83.2 Plus
Dvir\GJ10358-PA 86 GJ10358-PA 3..83 10..90 282 65.4 Plus
Dvir\GJ21736-PA 2431 GJ21736-PA 67..443 37..436 270 26.6 Plus
Dvir\GJ22868-PA 2346 GJ22868-PA 44..376 92..437 264 27.9 Plus
Dvir\GJ21725-PA 2419 GJ21725-PA 23..431 25..437 222 22.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12233-PA 437 GK12233-PA 1..436 1..437 1935 83.3 Plus
Dwil\GK12914-PA 2400 GK12914-PA 96..428 92..437 258 28.2 Plus
Dwil\GK18431-PA 2529 GK18431-PA 164..538 39..436 247 25.4 Plus
Dwil\GK18430-PA 2372 GK18430-PA 27..400 26..437 217 22.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10150-PA 439 GE10150-PA 1..438 1..438 2174 95.7 Plus
Dyak\GE18210-PA 2540 GE18210-PA 172..546 39..436 263 25.9 Plus
Dyak\GE18209-PA 2409 GE18209-PA 19..426 26..437 229 22.9 Plus