BDGP Sequence Production Resources |
Search the DGRC for RH10820
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 108 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12170-RA |
Protein status: | RH10820.pep: gold |
Preliminary Size: | 1322 |
Sequenced Size: | 1438 |
Gene | Date | Evidence |
---|---|---|
CG12170 | 2002-10-18 | Blastp of sequenced clone |
CG12170 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12170 | 2008-04-29 | Release 5.5 accounting |
CG12170 | 2008-08-15 | Release 5.9 accounting |
CG12170 | 2008-12-18 | 5.12 accounting |
1438 bp (1438 high quality bases) assembled on 2002-10-18
GenBank Submission: BT001769
> RH10820.complete GCTCTCACTTACGTGATCATGTAAACGAAATGCGAGTTTTAGGAAAGTGC ACTGTTTTGGTCAGGCAAACCCGCAGCTTATCCACGCCATCTGGGCGCCG CAGAGTGGTGGTCACGGGAAGTGGCGCAGTCACTCCGCTGGGCAACAATG GACCGGATTCTTGGCGACGCATCCTGGCCGGCGAGTCGGCAATTTCTCGG CTGAGTGCGGAGTTTAAGGGCTTGCCCTGCCAGGTTGCGGCTCAAATCCC GAGGGAAAACCTACAGCTGGATCAACACCTGACCAAGTCGGACATTAAGC TGATGAGCCCCGCCACGCAGCTTGCCGTATTGGCGGCTGAGGAGGCCTTG TCAACCGGAAAGCTGTGCCCCAAGCAATTGAGCGAGGAGGAGCTTGAGCG GTTCGGAGTGTGCGTGGGCATGGGCATGTTCGACCTTGCAGAGGTCTATG GCGCCTGGAACCAGCTGCAACGAGGTTACAACAGAGTAAGCCCCTTTTTC GTGCCCAGGCTGCTGCCCAGTATGGCGTGTGGTCACATAAGCATGCGACA TGGCTTAAGAGGACCTAACCACTCGGTGTCCACGGCCTGCGCCACAGGTG CCCATGCCCTGGGCGATGCCATGCGCTTCATTCGCAGCGGAGATGCCGAC TTGATGCTGGCGGGGAGTGGTGAGGCCTGCATAGATCCGCTCTCCATCGC TGGATTTTGCAGACTGCGGGCTCTGAGCACCGCATTCAACGATAATCCGG CGGTTGCGTCCAGACCGTTTGACAAGTCCCGGGATGGCTTCGTGATGGGC GAGGGCGCAGCTGTGCTCTTGCTGGAAGAACTGGAGCACGCCCGCGCTCG GGGAGCTCCCATTCTAGCTGAGATTCTGGGCTACGGCTTGTCCGGCGATG CCTATCACATAACGTCGCCCAGCGATGACGGCGCCGGAGCCACTCTTGCC ATGAAGCGGGCCATACAAGATGCTGGGATTGCACCAGAGGATGTTACGTA TGTAAATGCCCACGCAACCTCCACGCCCACCGGGGATCGCATTGAGTCAC ACGCTATAGGTCGTGTTTTCGGGGCGCACACTCCGCAGGTGAGGGTCTCC TCCACCAAGGGAGCACATGGCCACCTGCTGGGCTCCTCTGGCAACCTGGA AGCGCTCTTTGTGGTGCTCGCCTGCGCGAATAACAAGCTGCCGCCCTCCA TCAACATTGAGCACCTCGATGTGGACGTCAATGTGGTCACGAAAGCTACT GATTGGTCGGCGGACCAAAAGCGGCGTGTTGCCCTCAAGAATTCCTTCGG CTTTGGAGGAACCAATGCCTCCCTCTGCATTGCTAGCTACATTTAATAGT AGCGATAAGTTGTTAACTATTTTTTAGAGATCCACGTAAATAAAATCCTT GAATGTTTGCATATTTTTAGGAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12170-RA | 1421 | CG12170-RA | 3..1421 | 3..1421 | 7095 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1462897..1464315 | 3..1421 | 7095 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5637239..5638662 | 3..1426 | 7120 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5378070..5379493 | 3..1426 | 7120 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1462895..1464315 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1317 | 30..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1317 | 30..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1317 | 30..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1317 | 30..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1317 | 30..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1421 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1421 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 4..1424 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 1..1421 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12170-RA | 4..1424 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5637237..5638657 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5637237..5638657 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5637237..5638657 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1462959..1464379 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5378068..5379488 | 1..1421 | 99 | Plus |
Translation from 2 to 1345
> RH10820.hyp SHLRDHVNEMRVLGKCTVLVRQTRSLSTPSGRRRVVVTGSGAVTPLGNNG PDSWRRILAGESAISRLSAEFKGLPCQVAAQIPRENLQLDQHLTKSDIKL MSPATQLAVLAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYG AWNQLQRGYNRVSPFFVPRLLPSMACGHISMRHGLRGPNHSVSTACATGA HALGDAMRFIRSGDADLMLAGSGEACIDPLSIAGFCRLRALSTAFNDNPA VASRPFDKSRDGFVMGEGAAVLLLEELEHARARGAPILAEILGYGLSGDA YHITSPSDDGAGATLAMKRAIQDAGIAPEDVTYVNAHATSTPTGDRIESH AIGRVFGAHTPQVRVSSTKGAHGHLLGSSGNLEALFVVLACANNKLPPSI NIEHLDVDVNVVTKATDWSADQKRRVALKNSFGFGGTNASLCIASYI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12170-PA | 438 | CG12170-PA | 1..438 | 10..447 | 2251 | 100 | Plus |
CG3523-PA | 2438 | CG3523-PA | 82..444 | 73..445 | 266 | 25.8 | Plus |
CG3523-PC | 2540 | CG3523-PC | 184..546 | 73..445 | 266 | 25.8 | Plus |
CG17374-PC | 2394 | CG17374-PC | 92..424 | 101..446 | 254 | 27.7 | Plus |
v(2)k05816-PA | 2409 | CG3524-PA | 19..426 | 35..446 | 251 | 22.7 | Plus |
Translation from 29 to 1345
> RH10820.pep MRVLGKCTVLVRQTRSLSTPSGRRRVVVTGSGAVTPLGNNGPDSWRRILA GESAISRLSAEFKGLPCQVAAQIPRENLQLDQHLTKSDIKLMSPATQLAV LAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYGAWNQLQRGY NRVSPFFVPRLLPSMACGHISMRHGLRGPNHSVSTACATGAHALGDAMRF IRSGDADLMLAGSGEACIDPLSIAGFCRLRALSTAFNDNPAVASRPFDKS RDGFVMGEGAAVLLLEELEHARARGAPILAEILGYGLSGDAYHITSPSDD GAGATLAMKRAIQDAGIAPEDVTYVNAHATSTPTGDRIESHAIGRVFGAH TPQVRVSSTKGAHGHLLGSSGNLEALFVVLACANNKLPPSINIEHLDVDV NVVTKATDWSADQKRRVALKNSFGFGGTNASLCIASYI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17575-PA | 442 | GF17575-PA | 11..440 | 8..437 | 2006 | 87.2 | Plus |
Dana\GF17576-PA | 442 | GF17576-PA | 11..440 | 8..437 | 2006 | 87.2 | Plus |
Dana\GF17574-PA | 442 | GF17574-PA | 11..440 | 8..437 | 2006 | 87.2 | Plus |
Dana\GF14401-PA | 2550 | GF14401-PA | 180..554 | 39..436 | 257 | 26.3 | Plus |
Dana\GF14400-PA | 2411 | GF14400-PA | 19..426 | 26..437 | 224 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12975-PA | 439 | GG12975-PA | 1..438 | 1..438 | 2248 | 96.3 | Plus |
Dere\GG24920-PA | 2544 | GG24920-PA | 176..550 | 39..436 | 263 | 25.9 | Plus |
Dere\GG24919-PA | 2409 | GG24919-PA | 19..426 | 26..437 | 232 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18374-PA | 433 | GH18374-PA | 3..430 | 10..437 | 1826 | 81.1 | Plus |
Dgri\GH10963-PA | 2433 | GH10963-PA | 38..444 | 24..436 | 256 | 24.9 | Plus |
Dgri\GH10962-PA | 2427 | GH10962-PA | 24..432 | 25..437 | 241 | 23.8 | Plus |
Dgri\GH23527-PA | 777 | GH23527-PA | 44..369 | 92..430 | 228 | 27.7 | Plus |
Dgri\GH20680-PA | 2346 | GH20680-PA | 44..369 | 92..430 | 226 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12170-PA | 438 | CG12170-PA | 1..438 | 1..438 | 2251 | 100 | Plus |
FASN1-PA | 2438 | CG3523-PA | 82..444 | 64..436 | 266 | 25.8 | Plus |
FASN1-PC | 2540 | CG3523-PC | 184..546 | 64..436 | 266 | 25.8 | Plus |
FASN3-PC | 2394 | CG17374-PC | 92..424 | 92..437 | 254 | 27.7 | Plus |
FASN2-PA | 2409 | CG3524-PA | 19..426 | 26..437 | 251 | 22.7 | Plus |
FASN2-PB | 2410 | CG3524-PB | 19..426 | 26..437 | 251 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23365-PA | 434 | GI23365-PA | 3..431 | 10..437 | 1899 | 83.7 | Plus |
Dmoj\GI10520-PA | 2433 | GI10520-PA | 38..444 | 24..436 | 261 | 24.9 | Plus |
Dmoj\GI23207-PA | 2395 | GI23207-PA | 92..424 | 92..437 | 246 | 26.9 | Plus |
Dmoj\GI10509-PA | 2419 | GI10509-PA | 24..431 | 26..437 | 241 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24388-PA | 432 | GL24388-PA | 1..429 | 1..437 | 1813 | 81.2 | Plus |
Dper\GL18554-PA | 2603 | GL18554-PA | 194..604 | 20..436 | 259 | 24.7 | Plus |
Dper\GL18551-PA | 480 | GL18551-PA | 20..427 | 26..437 | 246 | 24.7 | Plus |
Dper\GL12292-PA | 1975 | GL12292-PA | 44..376 | 92..437 | 237 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26596-PA | 440 | GA26596-PA | 1..437 | 1..437 | 1970 | 86.3 | Plus |
Dpse\GA17497-PA | 2603 | GA17497-PA | 194..604 | 20..436 | 259 | 24.7 | Plus |
Dpse\GA17498-PA | 2410 | GA17498-PA | 20..427 | 26..437 | 247 | 24 | Plus |
Dpse\GA26263-PB | 2367 | GA26263-PB | 95..427 | 92..437 | 236 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10827-PA | 439 | GM10827-PA | 1..438 | 1..438 | 2268 | 97.5 | Plus |
Dsec\GM18393-PA | 3089 | GM18393-PA | 721..1095 | 39..436 | 260 | 25.7 | Plus |
Dsec\GM18393-PA | 3089 | GM18393-PA | 19..426 | 26..437 | 238 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19804-PA | 439 | GD19804-PA | 1..438 | 1..438 | 2268 | 97.5 | Plus |
Dsim\GD23207-PA | 2529 | GD23207-PA | 177..551 | 39..436 | 260 | 25.7 | Plus |
Dsim\GD23205-PA | 1642 | GD23205-PA | 19..350 | 26..365 | 195 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10359-PA | 433 | GJ10359-PA | 3..430 | 10..437 | 1883 | 83.2 | Plus |
Dvir\GJ10358-PA | 86 | GJ10358-PA | 3..83 | 10..90 | 282 | 65.4 | Plus |
Dvir\GJ21736-PA | 2431 | GJ21736-PA | 67..443 | 37..436 | 270 | 26.6 | Plus |
Dvir\GJ22868-PA | 2346 | GJ22868-PA | 44..376 | 92..437 | 264 | 27.9 | Plus |
Dvir\GJ21725-PA | 2419 | GJ21725-PA | 23..431 | 25..437 | 222 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12233-PA | 437 | GK12233-PA | 1..436 | 1..437 | 1935 | 83.3 | Plus |
Dwil\GK12914-PA | 2400 | GK12914-PA | 96..428 | 92..437 | 258 | 28.2 | Plus |
Dwil\GK18431-PA | 2529 | GK18431-PA | 164..538 | 39..436 | 247 | 25.4 | Plus |
Dwil\GK18430-PA | 2372 | GK18430-PA | 27..400 | 26..437 | 217 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10150-PA | 439 | GE10150-PA | 1..438 | 1..438 | 2174 | 95.7 | Plus |
Dyak\GE18210-PA | 2540 | GE18210-PA | 172..546 | 39..436 | 263 | 25.9 | Plus |
Dyak\GE18209-PA | 2409 | GE18209-PA | 19..426 | 26..437 | 229 | 22.9 | Plus |