BDGP Sequence Production Resources |
Search the DGRC for RH10980
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 109 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7461-RB |
Protein status: | RH10980.pep: gold |
Sequenced Size: | 2028 |
Gene | Date | Evidence |
---|---|---|
CG7461 | 2009-06-08 | Manual selection by Joe Carlson |
2028 bp assembled on 2009-10-14
GenBank Submission: BT100101.1
> RH10980.complete GACACTGCAGACTCTCGGTCCAAAGGGCGATTTACCAAACAATTTCGAAA CTATGTGGAGGCACACGATCCAAAGTACCAGGTACCTGGCAGGAAACGCC TCGCTTTGCAGGCAAATAGCGACGCACAGTCCCAAACTGGGGGCGGAAAG CAATCGCAGCAAGGAAAAGGCAAGTGAGAATGAGTCCTTTATGGCCAACA TCTTCCGTGGATCACTGGTGTCAAGCCAAGTGTTCCCGTATCCGGATGTC CTGACCGCGGAGCAGAAGGAGCTGACCAACAGCCTGATAGATCCGTTCGA GCGTTTCTTCTCCGATGTCAATGACGCTGCCCGCAACGATGCCAACTCTA AAATAGATGACACCACTTCGACGGCTCTGTGGGAGCTCGGGGCCTTCGGA ATCCAAGTGCCATCTGAATTCGGTGGCCTCGGTCTGAACAATACCCAGTA CGGCAGGCTGTGCGCCATTGTGGGTGTCAACGATCTGGGACTGGGCATCA CGATTGGCGCCCATCAGAGTATTGGCTTCAAGGGAATACTGCTGTACGGC ACCCCCGAGCAGAAGGAGAAGTACCTGCCCAAGGTGGCCGCCGAGCAGGT GTACGCTGCCTTTGCCCTTACGGAACCCAGCTCCGGATCTGATGCGGGTT CCATTCGATGCCGTGCCGTGAAGAGTGCCGATGGAAAGCACTACGTCCTT AATGGCTCAAAAATCTGGATTTCCAATGGCGGAATTGCCGAAATTATGAC CGTTTTCGCACAGACCGAGCAGGTGGACCCGAAGACTGGCGAGAAGAAGG ACAAGGTCACTGCCTTCATTGTGGAACGATCCTTCGGAGGTGTAACCAAT GGACCACCGGAGAAGAAAATGGGCATCAAGGCATCGAACACGGCCGAAGT GTATTTCGAAGATGTAAAGATTCCAATTGAAAATGTGCTCGGCAAGGAAG GTGATGGATTCAAGGTTGCCATGAACATATTGAACAACGGTCGGTTTGGA ATGGGCGCCACGCTATCGGGAACAATGAAGAAATGCATCGAACAGGCCAC CGAGCATGCCAACAATCGAGTTCAGTTTGGTCAAAAACTAAAGAACTATG GATCCATCCAAGAGAAATTGGCTCAGATGAACATTCTGCAGTACGCCACG GAGTCGATGGCGTTTACTATTTCACAAAACATGGATGCCGGCAGCAAGGA CTATCACTTGGAAGCCGCCATCTCGAAGATCTATGCTTCGGAGAGCGCGT GGTATGTTTGCGACGAGGCTATACAAATTCTGGGCGGCATGGGATACATG GTGGATAATGGATTGGAACGAGTCCTGCGTGACCTGCGCATTTTCCGCAT ATTCGAGGGCACCAATGACATTCTCCGGCTGTTCATTGCCCTGACTGGCA TTCAATATGCGGGATCCCACCTTAAGGAACTGCAGCGCGCATTCAAGAAT CCCTCGGCCAATTTGGGACTGATTTTCAAAGAGGCCTCCAGGCGGGCGGC CTCCACTGTCGGCTTGGGCGGCACCGATCTGAGTGGCCACGTAGTGGGTG AACTCTTGCCTTATGCCAAAAAAACGGCCCATTGTATTGATCTTTTTGGA CAATCGGTGGAAGAACTATTGCTGCGATACAACAAAAACATAGTTAACGA ACAAATTTTGCTAACACGACTGGCAAATGCAGCCATTGATATTTATGCAA TGGTTGTGACGCAATCGCGATCATCCCGTGCAGTCAATCTGAATCTGCCA ACTGCACAACACGAGCTCAACATGACCAAGGCACTCACTATTCAGGCATC TGATCGAGTGATTAAGAATCTACAGGCTGCCACATCCAGTCATCATAGGT CTCTCAATGAGAAGATTTCCACCATCGCCAAGACCACTTTGGAAAATGGC GGTGTGACTACGACTGGAATCTTGGATCAAAACTAGACCAATATACTTTT ATACGAATTTTAAGCCCTTGATTGTTAACCTAGTATGAATGCCAATAAAG TCTTGTAAATAATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7461-RB | 2022 | CG7461-RB | 11..2022 | 2..2013 | 10060 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 15192346..15194356 | 2..2013 | 9935 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 19305173..19307186 | 2..2015 | 10070 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 19306372..19308385 | 2..2015 | 10070 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
jockey | 5020 | jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). | 1378..1432 | 1927..1978 | 115 | 70.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 15192344..15194356 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 1..1884 | 53..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 1..1884 | 53..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 1..1884 | 53..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 1..1884 | 53..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 9..2022 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 9..2022 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 2..2013 | 2..2013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7461-RB | 2..2013 | 2..2013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19305171..19307184 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19305171..19307184 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19305171..19307184 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 15192676..15194689 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19306370..19308383 | 1..2013 | 99 | Plus |
Translation from 0 to 1935
> RH10980.hyp TLQTLGPKGDLPNNFETMWRHTIQSTRYLAGNASLCRQIATHSPKLGAES NRSKEKASENESFMANIFRGSLVSSQVFPYPDVLTAEQKELTNSLIDPFE RFFSDVNDAARNDANSKIDDTTSTALWELGAFGIQVPSEFGGLGLNNTQY GRLCAIVGVNDLGLGITIGAHQSIGFKGILLYGTPEQKEKYLPKVAAEQV YAAFALTEPSSGSDAGSIRCRAVKSADGKHYVLNGSKIWISNGGIAEIMT VFAQTEQVDPKTGEKKDKVTAFIVERSFGGVTNGPPEKKMGIKASNTAEV YFEDVKIPIENVLGKEGDGFKVAMNILNNGRFGMGATLSGTMKKCIEQAT EHANNRVQFGQKLKNYGSIQEKLAQMNILQYATESMAFTISQNMDAGSKD YHLEAAISKIYASESAWYVCDEAIQILGGMGYMVDNGLERVLRDLRIFRI FEGTNDILRLFIALTGIQYAGSHLKELQRAFKNPSANLGLIFKEASRRAA STVGLGGTDLSGHVVGELLPYAKKTAHCIDLFGQSVEELLLRYNKNIVNE QILLTRLANAAIDIYAMVVTQSRSSRAVNLNLPTAQHELNMTKALTIQAS DRVIKNLQAATSSHHRSLNEKISTIAKTTLENGGVTTTGILDQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7461-PC | 627 | CG7461-PC | 1..627 | 18..644 | 3185 | 100 | Plus |
CG7461-PB | 627 | CG7461-PB | 1..627 | 18..644 | 3185 | 100 | Plus |
Arc42-PA | 405 | CG4703-PA | 49..402 | 108..476 | 545 | 35.2 | Plus |
CG3902-PA | 414 | CG3902-PA | 64..399 | 113..457 | 524 | 35.1 | Plus |
CG12262-PA | 419 | CG12262-PA | 60..408 | 109..463 | 515 | 35.6 | Plus |
Translation from 1 to 1935
> RH10980.pep TLQTLGPKGDLPNNFETMWRHTIQSTRYLAGNASLCRQIATHSPKLGAES NRSKEKASENESFMANIFRGSLVSSQVFPYPDVLTAEQKELTNSLIDPFE RFFSDVNDAARNDANSKIDDTTSTALWELGAFGIQVPSEFGGLGLNNTQY GRLCAIVGVNDLGLGITIGAHQSIGFKGILLYGTPEQKEKYLPKVAAEQV YAAFALTEPSSGSDAGSIRCRAVKSADGKHYVLNGSKIWISNGGIAEIMT VFAQTEQVDPKTGEKKDKVTAFIVERSFGGVTNGPPEKKMGIKASNTAEV YFEDVKIPIENVLGKEGDGFKVAMNILNNGRFGMGATLSGTMKKCIEQAT EHANNRVQFGQKLKNYGSIQEKLAQMNILQYATESMAFTISQNMDAGSKD YHLEAAISKIYASESAWYVCDEAIQILGGMGYMVDNGLERVLRDLRIFRI FEGTNDILRLFIALTGIQYAGSHLKELQRAFKNPSANLGLIFKEASRRAA STVGLGGTDLSGHVVGELLPYAKKTAHCIDLFGQSVEELLLRYNKNIVNE QILLTRLANAAIDIYAMVVTQSRSSRAVNLNLPTAQHELNMTKALTIQAS DRVIKNLQAATSSHHRSLNEKISTIAKTTLENGGVTTTGILDQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23652-PA | 527 | GF23652-PA | 1..527 | 118..644 | 2487 | 87.3 | Plus |
Dana\GF17623-PA | 405 | GF17623-PA | 30..402 | 92..476 | 547 | 34 | Plus |
Dana\GF10656-PA | 420 | GF10656-PA | 37..408 | 84..463 | 532 | 35.1 | Plus |
Dana\GF10158-PA | 419 | GF10158-PA | 80..410 | 126..462 | 519 | 35.6 | Plus |
Dana\GF10801-PA | 415 | GF10801-PA | 63..400 | 111..457 | 505 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21959-PA | 627 | GG21959-PA | 1..627 | 18..644 | 3296 | 97.8 | Plus |
Dere\Arc42-PA | 405 | GG23560-PA | 49..402 | 108..476 | 550 | 35.5 | Plus |
Dere\GG14445-PA | 419 | GG14445-PA | 60..408 | 109..463 | 527 | 35.8 | Plus |
Dere\GG13447-PA | 414 | GG13447-PA | 62..399 | 111..457 | 522 | 35.3 | Plus |
Dere\GG17152-PA | 415 | GG17152-PA | 77..405 | 126..463 | 494 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15160-PA | 578 | GH15160-PA | 1..578 | 67..644 | 2399 | 75.8 | Plus |
Dgri\GH16400-PA | 406 | GH16400-PA | 50..403 | 108..476 | 540 | 36.9 | Plus |
Dgri\GH14704-PA | 419 | GH14704-PA | 36..407 | 84..463 | 537 | 35.6 | Plus |
Dgri\GH16965-PA | 414 | GH16965-PA | 62..399 | 111..457 | 531 | 36.5 | Plus |
Dgri\GH22516-PA | 424 | GH22516-PA | 85..415 | 126..462 | 509 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7461-PC | 627 | CG7461-PC | 1..627 | 18..644 | 3185 | 100 | Plus |
CG7461-PB | 627 | CG7461-PB | 1..627 | 18..644 | 3185 | 100 | Plus |
Arc42-PA | 405 | CG4703-PA | 49..402 | 108..476 | 545 | 35.2 | Plus |
CG3902-PA | 414 | CG3902-PA | 64..399 | 113..457 | 524 | 35.1 | Plus |
CG12262-PA | 419 | CG12262-PA | 60..408 | 109..463 | 515 | 35.6 | Plus |
CG6638-PA | 420 | CG6638-PA | 81..411 | 126..462 | 500 | 35.4 | Plus |
CG4860-PA | 415 | CG4860-PA | 77..405 | 126..463 | 489 | 35.5 | Plus |
Egm-PA | 639 | CG9006-PA | 55..628 | 49..634 | 396 | 25 | Plus |
CG9547-PA | 419 | CG9547-PA | 84..414 | 129..467 | 347 | 29.6 | Plus |
CG9527-PD | 703 | CG9527-PD | 152..478 | 190..479 | 201 | 26 | Plus |
CG9527-PC | 703 | CG9527-PC | 152..478 | 190..479 | 201 | 26 | Plus |
CG9527-PA | 703 | CG9527-PA | 152..478 | 190..479 | 201 | 26 | Plus |
CG9527-PB | 724 | CG9527-PB | 173..499 | 190..479 | 201 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12099-PA | 581 | GI12099-PA | 1..581 | 64..644 | 2480 | 78 | Plus |
Dmoj\GI22432-PA | 406 | GI22432-PA | 1..403 | 64..476 | 541 | 33.9 | Plus |
Dmoj\GI12250-PA | 420 | GI12250-PA | 36..407 | 84..463 | 535 | 35.4 | Plus |
Dmoj\GI11829-PA | 414 | GI11829-PA | 62..399 | 111..457 | 524 | 35.9 | Plus |
Dmoj\GI12421-PA | 421 | GI12421-PA | 31..412 | 78..462 | 512 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14800-PA | 580 | GL14800-PA | 1..579 | 64..642 | 2620 | 84.6 | Plus |
Dper\GL12205-PA | 405 | GL12205-PA | 69..402 | 128..476 | 544 | 37.4 | Plus |
Dper\GL25250-PA | 415 | GL25250-PA | 63..400 | 111..457 | 523 | 35.6 | Plus |
Dper\GL25095-PA | 419 | GL25095-PA | 78..408 | 127..463 | 522 | 36.3 | Plus |
Dper\GL10298-PA | 420 | GL10298-PA | 81..411 | 126..462 | 505 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Arc42-PA | 405 | GA18369-PA | 69..402 | 128..476 | 544 | 37.4 | Plus |
Dpse\GA17761-PA | 415 | GA17761-PA | 63..400 | 111..457 | 523 | 35.6 | Plus |
Dpse\GA11516-PA | 419 | GA11516-PA | 78..408 | 127..463 | 522 | 36.3 | Plus |
Dpse\GA19744-PA | 420 | GA19744-PA | 81..411 | 126..462 | 505 | 35.7 | Plus |
Dpse\GA18485-PA | 411 | GA18485-PA | 73..401 | 126..463 | 496 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21947-PA | 627 | GM21947-PA | 1..627 | 18..644 | 3330 | 99 | Plus |
Dsec\GM26869-PA | 405 | GM26869-PA | 49..402 | 108..476 | 545 | 35 | Plus |
Dsec\GM24997-PA | 419 | GM24997-PA | 60..408 | 109..463 | 529 | 36.1 | Plus |
Dsec\GM24928-PA | 420 | GM24928-PA | 81..411 | 126..462 | 512 | 35.7 | Plus |
Dsec\GM26034-PA | 420 | GM26034-PA | 77..410 | 126..463 | 492 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11444-PA | 627 | GD11444-PA | 1..627 | 18..644 | 3324 | 98.9 | Plus |
Dsim\GD19319-PA | 405 | GD19319-PA | 69..402 | 128..476 | 547 | 36.4 | Plus |
Dsim\GD14030-PA | 439 | GD14030-PA | 60..408 | 109..463 | 532 | 36.1 | Plus |
Dsim\GD12323-PA | 420 | GD12323-PA | 62..405 | 111..457 | 509 | 35 | Plus |
Dsim\GD12977-PA | 420 | GD12977-PA | 81..411 | 126..462 | 505 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13373-PA | 581 | GJ13373-PA | 1..579 | 64..642 | 2490 | 77.9 | Plus |
Dvir\GJ11482-PA | 420 | GJ11482-PA | 36..407 | 84..463 | 548 | 36.4 | Plus |
Dvir\GJ19560-PA | 420 | GJ19560-PA | 36..407 | 84..463 | 548 | 36.4 | Plus |
Dvir\GJ10995-PA | 406 | GJ10995-PA | 70..403 | 128..476 | 544 | 37.1 | Plus |
Dvir\GJ13529-PA | 414 | GJ13529-PA | 62..399 | 111..457 | 529 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24068-PA | 413 | GK24068-PA | 1..330 | 269..598 | 1531 | 86.1 | Plus |
Dwil\GK24067-PA | 243 | GK24067-PA | 32..243 | 60..273 | 943 | 82.2 | Plus |
Dwil\Arc42-PA | 405 | GK22361-PA | 30..402 | 92..476 | 575 | 35.3 | Plus |
Dwil\GK23895-PA | 420 | GK23895-PA | 36..407 | 84..463 | 534 | 34.9 | Plus |
Dwil\GK20439-PA | 417 | GK20439-PA | 65..402 | 111..457 | 521 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12038-PA | 627 | GE12038-PA | 1..627 | 18..644 | 3293 | 97.3 | Plus |
Dyak\GE25631-PA | 405 | GE25631-PA | 30..402 | 92..476 | 549 | 34.3 | Plus |
Dyak\GE21636-PA | 419 | GE21636-PA | 60..408 | 109..463 | 527 | 35.8 | Plus |
Dyak\GE22549-PA | 414 | GE22549-PA | 62..399 | 111..457 | 518 | 35.1 | Plus |
Dyak\GE22545-PA | 414 | GE22545-PA | 62..399 | 111..457 | 518 | 35.1 | Plus |