Clone RH11377 Report

Search the DGRC for RH11377

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:113
Well:77
Vector:pFlc-1
Associated Gene/TranscriptScgalpha-RA
Protein status:RH11377.pep: gold
Preliminary Size:1391
Sequenced Size:1668

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7851 2001-12-17 Blastp of sequenced clone
CG7851 2002-01-01 Sim4 clustering to Release 2
CG7851 2003-01-01 Sim4 clustering to Release 3
Scgalpha 2008-04-29 Release 5.5 accounting
Scgalpha 2008-08-15 Release 5.9 accounting
Scgalpha 2008-12-18 5.12 accounting

Clone Sequence Records

RH11377.complete Sequence

1668 bp (1668 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071690

> RH11377.complete
CAGATTGGAATTTTTCATCGCCTCTGCGCTGGGCGGAATAACAATTTGTT
TATAGTCAATTAAAATGTGCTTGTGAATCGTAAAAAAAAAACTACATAAA
ATACAAAATGAAGTTTTTAAACTTAATAGTGGTCGTATTAGCTTTAATCT
GCAACGAAGTTCAGGGTCTAAAGTTGCAGGCAAATGTTGGAGAACTCTTC
ACCTACAAAATCGAACCGCAACTCTTTAACTGGACACACCAGGTGATCAG
CCAGCAATTTCGCTACAGACCCTCGCTGAAGAATTATCCCGATTTGCCCA
GTTGGATGCGATATATGTATAGCCATGAATACCATGCCGGCTTCCTCTAC
GGAACTCCTCCAGCATCGTCGGCTGGCAAGGATCTAAGTCTGGATGTGGT
CGCCCTTAATCGCCAGAATTACGAAACGCGACGCGTTGTGGTCACAATGT
TTGTCGCCCACAAGTTTCCCACACCCAATGTCGTGCAGATGAAAATAAAC
AATCTGAATTGGGTGCACCTAATGGATCCCGGCAGAAGGGAGAACCTACG
AAATATATTCCGCAACGATCTTTGGCCAAATAGCAAGGAGGACTTGAGTG
TGGTCTTCATGGAGTCAGCTGTGAATATGGGCGGACGACTTCCACTGCGA
CCGCAGCAGCGCGAGGGAGTCATTGTCCACGTGGGCAGCTTTGCCCAGTT
CTCACCGCGGCTGCAGGAACTCCAGGAGGAAGTGAGACCACTGTACAAGT
TGCCATCTTGCACCTACAAACGCACATCCGTGCAGAAAATCTTTGAGAAT
GTTGGCTTCAAACTGGACTGGTGCGCCTTTCGAATGGTGGGCATGGAATC
ACCAACGGAAATCCTCTTCCACAGTGGCAAGCAGAACGAGCAGCAGATGC
CCGATGATCTGAATCAGAGGCAAGAGGATCGCTGGATGGGAATCGCCAGG
GAGGATGTGCCCGAACGCAATTACATCGATGAATTCGCCTTTGCCTTTGC
CATTCCGGGCATGATTTTTGCCATTTTAATCGGAATGCTATCAGCTGTTT
TGTGTTTCCAGCACGAGAAGTTTTACGATCCGCATTCTGAGTTTTTCTTT
GCCAACATTTTCCACATCTGCGAAGAGTCCTGTGCGCCGCAAAGCGCGTC
AAGCGATTCTGGTGCGGATGATGGTTCTGAGAGCTCTTCCAATTCGGATT
ATCCCATGGCATCCACTGTGCAGATGGTTCAGTGTTCGGATAGCAAATCC
AATCAGCCCATAACAACATTGAAAAGCCTCAAGGATCCCAATTTTCTACT
GGACAACACTAGCATGAGATCTCAGAGTCCCAACAACAGCTTTTACCAGT
TGGACTGCGGAAACTCCAGCATTTATGCTCGTCCCAAGCCACCGCCATAT
AAGGGCGGTACTTTGGGTCGAAATGGAGTGGACATTTGACAAACATCTCC
CCGAGTGCTCTACTGCTGAGGAGTGTTGGATTCGAGCGCATACAATTTCA
ATAAGCAATATCGAGGAGGAGCGTTATATCAATTGCATAAATACTCACAC
CTGCCGAACTAGACAAACCATATCGTAATTATCATTTTATATAGATATGC
AAGCATGAAACTAGCCAATTAGTTTGCCATTTAAGAATAAAGGCAATCAA
ATAAAAAAAAAAAAAAAA

RH11377.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-RA 1686 Scgalpha-RA 21..1672 4..1655 8260 100 Plus
Scgalpha.a 1569 Scgalpha.a 15..1083 4..1072 5345 100 Plus
Scgalpha.a 1569 Scgalpha.a 1084..1555 1184..1655 2360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8302388..8303051 4..667 3245 99.2 Plus
chr2L 23010047 chr2L 8303111..8303516 667..1072 2000 99.5 Plus
chr2L 23010047 chr2L 8303989..8304315 1326..1652 1575 98.8 Plus
chr2L 23010047 chr2L 8303781..8303926 1182..1327 730 100 Plus
chr2L 23010047 chr2L 8303601..8303711 1073..1183 540 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:21:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8303437..8304100 4..667 3320 100 Plus
2L 23513712 2L 8304172..8304577 667..1072 2030 100 Plus
2L 23513712 2L 8305050..8305379 1326..1655 1650 100 Plus
2L 23513712 2L 8304842..8304987 1182..1327 730 100 Plus
2L 23513712 2L 8304662..8304772 1073..1183 555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8303437..8304100 4..667 3320 100 Plus
2L 23513712 2L 8304172..8304577 667..1072 2030 100 Plus
2L 23513712 2L 8305050..8305379 1326..1655 1650 100 Plus
2L 23513712 2L 8304842..8304987 1182..1327 730 100 Plus
2L 23513712 2L 8304662..8304772 1073..1183 555 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:43:41 has no hits.

RH11377.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:44:31 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8302384..8303051 1..667 98 -> Plus
chr2L 8303112..8303516 668..1072 99 -> Plus
chr2L 8303601..8303711 1073..1183 99 -> Plus
chr2L 8303783..8303926 1184..1327 100 -> Plus
chr2L 8303991..8304315 1328..1652 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:20 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 1..1332 108..1439 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:00:19 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 1..1332 108..1439 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:23:27 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RC 1..1362 108..1469 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:59 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 1..1332 108..1439 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:10 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RC 1..1362 108..1469 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:26:13 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 1..1653 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:00:19 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 1..1653 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:23:27 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 5..1657 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:59 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 1..1653 1..1652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:10 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 5..1657 1..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:31 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8303433..8304100 1..667 99 -> Plus
2L 8304173..8304577 668..1072 100 -> Plus
2L 8304662..8304772 1073..1183 100 -> Plus
2L 8304844..8304987 1184..1327 100 -> Plus
2L 8305052..8305376 1328..1652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:31 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8303433..8304100 1..667 99 -> Plus
2L 8304173..8304577 668..1072 100 -> Plus
2L 8304662..8304772 1073..1183 100 -> Plus
2L 8304844..8304987 1184..1327 100 -> Plus
2L 8305052..8305376 1328..1652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:31 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8303433..8304100 1..667 99 -> Plus
2L 8304173..8304577 668..1072 100 -> Plus
2L 8304662..8304772 1073..1183 100 -> Plus
2L 8304844..8304987 1184..1327 100 -> Plus
2L 8305052..8305376 1328..1652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:23:27 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8303433..8304100 1..667 99 -> Plus
arm_2L 8304173..8304577 668..1072 100 -> Plus
arm_2L 8304662..8304772 1073..1183 100 -> Plus
arm_2L 8304844..8304987 1184..1327 100 -> Plus
arm_2L 8305052..8305376 1328..1652 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:00:22 Download gff for RH11377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8303433..8304100 1..667 99 -> Plus
2L 8304173..8304577 668..1072 100 -> Plus
2L 8304662..8304772 1073..1183 100 -> Plus
2L 8304844..8304987 1184..1327 100 -> Plus
2L 8305052..8305376 1328..1652 100   Plus

RH11377.pep Sequence

Translation from 107 to 1438

> RH11377.pep
MKFLNLIVVVLALICNEVQGLKLQANVGELFTYKIEPQLFNWTHQVISQQ
FRYRPSLKNYPDLPSWMRYMYSHEYHAGFLYGTPPASSAGKDLSLDVVAL
NRQNYETRRVVVTMFVAHKFPTPNVVQMKINNLNWVHLMDPGRRENLRNI
FRNDLWPNSKEDLSVVFMESAVNMGGRLPLRPQQREGVIVHVGSFAQFSP
RLQELQEEVRPLYKLPSCTYKRTSVQKIFENVGFKLDWCAFRMVGMESPT
EILFHSGKQNEQQMPDDLNQRQEDRWMGIAREDVPERNYIDEFAFAFAIP
GMIFAILIGMLSAVLCFQHEKFYDPHSEFFFANIFHICEESCAPQSASSD
SGADDGSESSSNSDYPMASTVQMVQCSDSKSNQPITTLKSLKDPNFLLDN
TSMRSQSPNNSFYQLDCGNSSIYARPKPPPYKGGTLGRNGVDI*

RH11377.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14630-PA 438 GF14630-PA 1..438 1..443 1975 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10529-PA 442 GG10529-PA 1..442 1..443 2306 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11586-PA 438 GH11586-PA 1..438 1..443 1882 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-PC 453 CG7851-PC 1..443 1..443 2356 100 Plus
Scgalpha-PA 443 CG7851-PA 1..443 1..443 2356 100 Plus
Scgalpha-PB 406 CG7851-PB 1..406 1..443 2106 91.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17155-PA 443 GI17155-PA 1..443 1..443 1913 79.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18733-PA 440 GL18733-PA 16..440 14..443 1888 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20633-PA 440 GA20633-PA 16..440 14..443 1888 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16870-PA 443 GM16870-PA 1..443 1..443 2362 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23519-PA 447 GD23519-PA 1..447 1..443 2228 93.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17659-PA 445 GJ17659-PA 21..445 21..443 1871 80.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15542-PA 435 GK15542-PA 25..435 22..443 1850 82.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18749-PA 443 GE18749-PA 1..443 1..443 2286 95.7 Plus

RH11377.hyp Sequence

Translation from 107 to 1438

> RH11377.hyp
MKFLNLIVVVLALICNEVQGLKLQANVGELFTYKIEPQLFNWTHQVISQQ
FRYRPSLKNYPDLPSWMRYMYSHEYHAGFLYGTPPASSAGKDLSLDVVAL
NRQNYETRRVVVTMFVAHKFPTPNVVQMKINNLNWVHLMDPGRRENLRNI
FRNDLWPNSKEDLSVVFMESAVNMGGRLPLRPQQREGVIVHVGSFAQFSP
RLQELQEEVRPLYKLPSCTYKRTSVQKIFENVGFKLDWCAFRMVGMESPT
EILFHSGKQNEQQMPDDLNQRQEDRWMGIAREDVPERNYIDEFAFAFAIP
GMIFAILIGMLSAVLCFQHEKFYDPHSEFFFANIFHICEESCAPQSASSD
SGADDGSESSSNSDYPMASTVQMVQCSDSKSNQPITTLKSLKDPNFLLDN
TSMRSQSPNNSFYQLDCGNSSIYARPKPPPYKGGTLGRNGVDI*

RH11377.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-PC 453 CG7851-PC 1..443 1..443 2356 100 Plus
Scgalpha-PA 443 CG7851-PA 1..443 1..443 2356 100 Plus
Scgalpha-PB 406 CG7851-PB 1..406 1..443 2106 91.6 Plus