BDGP Sequence Production Resources |
Search the DGRC for RH11377
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 113 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Scgalpha-RA |
Protein status: | RH11377.pep: gold |
Preliminary Size: | 1391 |
Sequenced Size: | 1668 |
Gene | Date | Evidence |
---|---|---|
CG7851 | 2001-12-17 | Blastp of sequenced clone |
CG7851 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7851 | 2003-01-01 | Sim4 clustering to Release 3 |
Scgalpha | 2008-04-29 | Release 5.5 accounting |
Scgalpha | 2008-08-15 | Release 5.9 accounting |
Scgalpha | 2008-12-18 | 5.12 accounting |
1668 bp (1668 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071690
> RH11377.complete CAGATTGGAATTTTTCATCGCCTCTGCGCTGGGCGGAATAACAATTTGTT TATAGTCAATTAAAATGTGCTTGTGAATCGTAAAAAAAAAACTACATAAA ATACAAAATGAAGTTTTTAAACTTAATAGTGGTCGTATTAGCTTTAATCT GCAACGAAGTTCAGGGTCTAAAGTTGCAGGCAAATGTTGGAGAACTCTTC ACCTACAAAATCGAACCGCAACTCTTTAACTGGACACACCAGGTGATCAG CCAGCAATTTCGCTACAGACCCTCGCTGAAGAATTATCCCGATTTGCCCA GTTGGATGCGATATATGTATAGCCATGAATACCATGCCGGCTTCCTCTAC GGAACTCCTCCAGCATCGTCGGCTGGCAAGGATCTAAGTCTGGATGTGGT CGCCCTTAATCGCCAGAATTACGAAACGCGACGCGTTGTGGTCACAATGT TTGTCGCCCACAAGTTTCCCACACCCAATGTCGTGCAGATGAAAATAAAC AATCTGAATTGGGTGCACCTAATGGATCCCGGCAGAAGGGAGAACCTACG AAATATATTCCGCAACGATCTTTGGCCAAATAGCAAGGAGGACTTGAGTG TGGTCTTCATGGAGTCAGCTGTGAATATGGGCGGACGACTTCCACTGCGA CCGCAGCAGCGCGAGGGAGTCATTGTCCACGTGGGCAGCTTTGCCCAGTT CTCACCGCGGCTGCAGGAACTCCAGGAGGAAGTGAGACCACTGTACAAGT TGCCATCTTGCACCTACAAACGCACATCCGTGCAGAAAATCTTTGAGAAT GTTGGCTTCAAACTGGACTGGTGCGCCTTTCGAATGGTGGGCATGGAATC ACCAACGGAAATCCTCTTCCACAGTGGCAAGCAGAACGAGCAGCAGATGC CCGATGATCTGAATCAGAGGCAAGAGGATCGCTGGATGGGAATCGCCAGG GAGGATGTGCCCGAACGCAATTACATCGATGAATTCGCCTTTGCCTTTGC CATTCCGGGCATGATTTTTGCCATTTTAATCGGAATGCTATCAGCTGTTT TGTGTTTCCAGCACGAGAAGTTTTACGATCCGCATTCTGAGTTTTTCTTT GCCAACATTTTCCACATCTGCGAAGAGTCCTGTGCGCCGCAAAGCGCGTC AAGCGATTCTGGTGCGGATGATGGTTCTGAGAGCTCTTCCAATTCGGATT ATCCCATGGCATCCACTGTGCAGATGGTTCAGTGTTCGGATAGCAAATCC AATCAGCCCATAACAACATTGAAAAGCCTCAAGGATCCCAATTTTCTACT GGACAACACTAGCATGAGATCTCAGAGTCCCAACAACAGCTTTTACCAGT TGGACTGCGGAAACTCCAGCATTTATGCTCGTCCCAAGCCACCGCCATAT AAGGGCGGTACTTTGGGTCGAAATGGAGTGGACATTTGACAAACATCTCC CCGAGTGCTCTACTGCTGAGGAGTGTTGGATTCGAGCGCATACAATTTCA ATAAGCAATATCGAGGAGGAGCGTTATATCAATTGCATAAATACTCACAC CTGCCGAACTAGACAAACCATATCGTAATTATCATTTTATATAGATATGC AAGCATGAAACTAGCCAATTAGTTTGCCATTTAAGAATAAAGGCAATCAA ATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scgalpha-RA | 1686 | Scgalpha-RA | 21..1672 | 4..1655 | 8260 | 100 | Plus |
Scgalpha.a | 1569 | Scgalpha.a | 15..1083 | 4..1072 | 5345 | 100 | Plus |
Scgalpha.a | 1569 | Scgalpha.a | 1084..1555 | 1184..1655 | 2360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8302388..8303051 | 4..667 | 3245 | 99.2 | Plus |
chr2L | 23010047 | chr2L | 8303111..8303516 | 667..1072 | 2000 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 8303989..8304315 | 1326..1652 | 1575 | 98.8 | Plus |
chr2L | 23010047 | chr2L | 8303781..8303926 | 1182..1327 | 730 | 100 | Plus |
chr2L | 23010047 | chr2L | 8303601..8303711 | 1073..1183 | 540 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8303437..8304100 | 4..667 | 3320 | 100 | Plus |
2L | 23513712 | 2L | 8304172..8304577 | 667..1072 | 2030 | 100 | Plus |
2L | 23513712 | 2L | 8305050..8305379 | 1326..1655 | 1650 | 100 | Plus |
2L | 23513712 | 2L | 8304842..8304987 | 1182..1327 | 730 | 100 | Plus |
2L | 23513712 | 2L | 8304662..8304772 | 1073..1183 | 555 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8303437..8304100 | 4..667 | 3320 | 100 | Plus |
2L | 23513712 | 2L | 8304172..8304577 | 667..1072 | 2030 | 100 | Plus |
2L | 23513712 | 2L | 8305050..8305379 | 1326..1655 | 1650 | 100 | Plus |
2L | 23513712 | 2L | 8304842..8304987 | 1182..1327 | 730 | 100 | Plus |
2L | 23513712 | 2L | 8304662..8304772 | 1073..1183 | 555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8302384..8303051 | 1..667 | 98 | -> | Plus |
chr2L | 8303112..8303516 | 668..1072 | 99 | -> | Plus |
chr2L | 8303601..8303711 | 1073..1183 | 99 | -> | Plus |
chr2L | 8303783..8303926 | 1184..1327 | 100 | -> | Plus |
chr2L | 8303991..8304315 | 1328..1652 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 1..1332 | 108..1439 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 1..1332 | 108..1439 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RC | 1..1362 | 108..1469 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 1..1332 | 108..1439 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RC | 1..1362 | 108..1469 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 1..1653 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 1..1653 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 5..1657 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 1..1653 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgalpha-RA | 5..1657 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8303433..8304100 | 1..667 | 99 | -> | Plus |
2L | 8304173..8304577 | 668..1072 | 100 | -> | Plus |
2L | 8304662..8304772 | 1073..1183 | 100 | -> | Plus |
2L | 8304844..8304987 | 1184..1327 | 100 | -> | Plus |
2L | 8305052..8305376 | 1328..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8303433..8304100 | 1..667 | 99 | -> | Plus |
2L | 8304173..8304577 | 668..1072 | 100 | -> | Plus |
2L | 8304662..8304772 | 1073..1183 | 100 | -> | Plus |
2L | 8304844..8304987 | 1184..1327 | 100 | -> | Plus |
2L | 8305052..8305376 | 1328..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8303433..8304100 | 1..667 | 99 | -> | Plus |
2L | 8304173..8304577 | 668..1072 | 100 | -> | Plus |
2L | 8304662..8304772 | 1073..1183 | 100 | -> | Plus |
2L | 8304844..8304987 | 1184..1327 | 100 | -> | Plus |
2L | 8305052..8305376 | 1328..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8303433..8304100 | 1..667 | 99 | -> | Plus |
arm_2L | 8304173..8304577 | 668..1072 | 100 | -> | Plus |
arm_2L | 8304662..8304772 | 1073..1183 | 100 | -> | Plus |
arm_2L | 8304844..8304987 | 1184..1327 | 100 | -> | Plus |
arm_2L | 8305052..8305376 | 1328..1652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8303433..8304100 | 1..667 | 99 | -> | Plus |
2L | 8304173..8304577 | 668..1072 | 100 | -> | Plus |
2L | 8304662..8304772 | 1073..1183 | 100 | -> | Plus |
2L | 8304844..8304987 | 1184..1327 | 100 | -> | Plus |
2L | 8305052..8305376 | 1328..1652 | 100 | Plus |
Translation from 107 to 1438
> RH11377.pep MKFLNLIVVVLALICNEVQGLKLQANVGELFTYKIEPQLFNWTHQVISQQ FRYRPSLKNYPDLPSWMRYMYSHEYHAGFLYGTPPASSAGKDLSLDVVAL NRQNYETRRVVVTMFVAHKFPTPNVVQMKINNLNWVHLMDPGRRENLRNI FRNDLWPNSKEDLSVVFMESAVNMGGRLPLRPQQREGVIVHVGSFAQFSP RLQELQEEVRPLYKLPSCTYKRTSVQKIFENVGFKLDWCAFRMVGMESPT EILFHSGKQNEQQMPDDLNQRQEDRWMGIAREDVPERNYIDEFAFAFAIP GMIFAILIGMLSAVLCFQHEKFYDPHSEFFFANIFHICEESCAPQSASSD SGADDGSESSSNSDYPMASTVQMVQCSDSKSNQPITTLKSLKDPNFLLDN TSMRSQSPNNSFYQLDCGNSSIYARPKPPPYKGGTLGRNGVDI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14630-PA | 438 | GF14630-PA | 1..438 | 1..443 | 1975 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10529-PA | 442 | GG10529-PA | 1..442 | 1..443 | 2306 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11586-PA | 438 | GH11586-PA | 1..438 | 1..443 | 1882 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scgalpha-PC | 453 | CG7851-PC | 1..443 | 1..443 | 2356 | 100 | Plus |
Scgalpha-PA | 443 | CG7851-PA | 1..443 | 1..443 | 2356 | 100 | Plus |
Scgalpha-PB | 406 | CG7851-PB | 1..406 | 1..443 | 2106 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17155-PA | 443 | GI17155-PA | 1..443 | 1..443 | 1913 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18733-PA | 440 | GL18733-PA | 16..440 | 14..443 | 1888 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20633-PA | 440 | GA20633-PA | 16..440 | 14..443 | 1888 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16870-PA | 443 | GM16870-PA | 1..443 | 1..443 | 2362 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23519-PA | 447 | GD23519-PA | 1..447 | 1..443 | 2228 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17659-PA | 445 | GJ17659-PA | 21..445 | 21..443 | 1871 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15542-PA | 435 | GK15542-PA | 25..435 | 22..443 | 1850 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18749-PA | 443 | GE18749-PA | 1..443 | 1..443 | 2286 | 95.7 | Plus |
Translation from 107 to 1438
> RH11377.hyp MKFLNLIVVVLALICNEVQGLKLQANVGELFTYKIEPQLFNWTHQVISQQ FRYRPSLKNYPDLPSWMRYMYSHEYHAGFLYGTPPASSAGKDLSLDVVAL NRQNYETRRVVVTMFVAHKFPTPNVVQMKINNLNWVHLMDPGRRENLRNI FRNDLWPNSKEDLSVVFMESAVNMGGRLPLRPQQREGVIVHVGSFAQFSP RLQELQEEVRPLYKLPSCTYKRTSVQKIFENVGFKLDWCAFRMVGMESPT EILFHSGKQNEQQMPDDLNQRQEDRWMGIAREDVPERNYIDEFAFAFAIP GMIFAILIGMLSAVLCFQHEKFYDPHSEFFFANIFHICEESCAPQSASSD SGADDGSESSSNSDYPMASTVQMVQCSDSKSNQPITTLKSLKDPNFLLDN TSMRSQSPNNSFYQLDCGNSSIYARPKPPPYKGGTLGRNGVDI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scgalpha-PC | 453 | CG7851-PC | 1..443 | 1..443 | 2356 | 100 | Plus |
Scgalpha-PA | 443 | CG7851-PA | 1..443 | 1..443 | 2356 | 100 | Plus |
Scgalpha-PB | 406 | CG7851-PB | 1..406 | 1..443 | 2106 | 91.6 | Plus |