BDGP Sequence Production Resources |
Search the DGRC for RH12051
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 120 |
Well: | 51 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mRpS31-RA |
Protein status: | RH12051.pep: gold |
Preliminary Size: | 1212 |
Sequenced Size: | 1289 |
Gene | Date | Evidence |
---|---|---|
CG5904 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5904 | 2002-02-22 | Blastp of sequenced clone |
CG5904 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpS31 | 2008-04-29 | Release 5.5 accounting |
mRpS31 | 2008-08-15 | Release 5.9 accounting |
mRpS31 | 2008-12-18 | 5.12 accounting |
1289 bp (1289 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089653
> RH12051.complete GATCTGGTCTGGCAACTCTCCGCCGAATTGTTGTTACGCGAGCGATTTCT TTGGTCTTATTTCTAGTTAAAATTATCAAAGAAATATTATAAAATGTTGG CCGTACGAAGTTCCCAGAGATTGGGCCTACGTTCCCTGCTACCGTCTGCC TTCAAAAACGTGGGATTGGTCAACTACTCCTCTTCGCAGTCCAAAAACGA CGATGGATACTCCTCTTCGGACGACGAAAAGCCCACGAAGAAGAAGGAGG AACCTGTGGAAACGGCGGCCCAGCGGCTGAACCGCCTGTTGGGCACCATG CAGGCCACGGATCAGCTCTCGGCATCGGACTTTCCACGTCCTGGTGATGC CAACAGGAAGCGGAGGGAGGCCCAGAAACAGGAGGCAGCCGCCAAGAATG TTCTAACTGCGGCCAAGAACATTGCTAGCATGCTGGGCACCAGTGAGAGC GACAAGAAGCAGACAGAGTCTGAGCTATTGGCCAAACTCCTTGGCCATGG AAGCGAGTCCTCTTCAGCAGCGACCGGAGAAAATCAGACGGCGGATGTTT CGGGATCTCCTTCTGGTGATAAGGAACTCAATCTGAGTGATATTATCGTG GGCATGAAGATCGATCGTCGTCAGCAGCCGCAGCAGGTGGAGCAGACCCG CGGCGAGTACGTTCGCCGCTCGCTGGCTTCCAGATTCAAGCCACAGAATC GAGATGGGGCTTATCAGCGGTCACAGAGGCAAACCAAACGAGAGGCTGAA TCCTTTACGGGCAGTGTCAATTTGTACGGCGGGGAACCGTTGGGTATCTT CAAGGATACCCAGCTGCCGATTTCCAACGACATCCTTTCAACCTGGTCAC AGCTGAGTGAGCGGGAGCTTAGTTTACAAGCTTCCCATCCCCCGGCAAAC TACTTCGAGCAAATGGTCCTGTGGACGGATCAAAAGAAGGTGTGGCGCTT TCCCATCAACAATGAGCAGGATTGGGAGGACGAGCATAACGTGGACTTCT CGGAACACATTTTTCTGGAACAACATCTCGAGGATTGGTGTCCTAGCAAG GGGCCTATTCGCCATTTCATGGAGCTCGTCTGCGTCGGCTTGTCCAAGAA TCCCTACTTGACTGCCCAGGAGAAGAAGGATCACATTTTCTGGTTCCGTG ACTATTTCCAGGCCAAGAAGGACATTCTGAGGGATCTGATTAGCAAGGAG CCAAGCAAAAGTATTTCTGCTTAATGTTTTTGTTTGAATATTTGTTAAAA ATATATTTTTGCTTTATAAGACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15995717..15996404 | 586..1273 | 3395 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 15995196..15995652 | 131..587 | 2240 | 99.3 | Plus |
chr3L | 24539361 | chr3L | 15995003..15995132 | 2..131 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16005912..16006601 | 586..1275 | 3450 | 100 | Plus |
3L | 28110227 | 3L | 16005391..16005847 | 131..587 | 2285 | 100 | Plus |
3L | 28110227 | 3L | 16005198..16005327 | 2..131 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15999012..15999701 | 586..1275 | 3450 | 100 | Plus |
3L | 28103327 | 3L | 15998491..15998947 | 131..587 | 2285 | 100 | Plus |
3L | 28103327 | 3L | 15998298..15998427 | 2..131 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1365..1420 | 1269..1212 | 123 | 70.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15995002..15995132 | 1..131 | 99 | -> | Plus |
chr3L | 15995197..15995652 | 132..587 | 99 | -> | Plus |
chr3L | 15995719..15996404 | 588..1273 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 1..1131 | 94..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 1..1131 | 94..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 1..1131 | 94..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 1..1131 | 94..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 1..1131 | 94..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 2..1273 | 2..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 2..1273 | 2..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 5..1277 | 1..1273 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 2..1273 | 2..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS31-RA | 5..1277 | 1..1273 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16005197..16005327 | 1..131 | 99 | -> | Plus |
3L | 16005392..16005847 | 132..587 | 100 | -> | Plus |
3L | 16005914..16006599 | 588..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16005197..16005327 | 1..131 | 99 | -> | Plus |
3L | 16005392..16005847 | 132..587 | 100 | -> | Plus |
3L | 16005914..16006599 | 588..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16005197..16005327 | 1..131 | 99 | -> | Plus |
3L | 16005392..16005847 | 132..587 | 100 | -> | Plus |
3L | 16005914..16006599 | 588..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15998297..15998427 | 1..131 | 99 | -> | Plus |
arm_3L | 15998492..15998947 | 132..587 | 100 | -> | Plus |
arm_3L | 15999014..15999699 | 588..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15998492..15998947 | 132..587 | 100 | -> | Plus |
3L | 15999014..15999699 | 588..1273 | 100 | Plus | |
3L | 15998297..15998427 | 1..131 | 99 | -> | Plus |
Translation from 93 to 1223
> RH12051.pep MLAVRSSQRLGLRSLLPSAFKNVGLVNYSSSQSKNDDGYSSSDDEKPTKK KEEPVETAAQRLNRLLGTMQATDQLSASDFPRPGDANRKRREAQKQEAAA KNVLTAAKNIASMLGTSESDKKQTESELLAKLLGHGSESSSAATGENQTA DVSGSPSGDKELNLSDIIVGMKIDRRQQPQQVEQTRGEYVRRSLASRFKP QNRDGAYQRSQRQTKREAESFTGSVNLYGGEPLGIFKDTQLPISNDILST WSQLSERELSLQASHPPANYFEQMVLWTDQKKVWRFPINNEQDWEDEHNV DFSEHIFLEQHLEDWCPSKGPIRHFMELVCVGLSKNPYLTAQEKKDHIFW FRDYFQAKKDILRDLISKEPSKSISA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24108-PA | 374 | GF24108-PA | 1..374 | 1..376 | 1573 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15943-PA | 377 | GG15943-PA | 1..377 | 1..376 | 1787 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14591-PA | 388 | GH14591-PA | 1..388 | 1..376 | 1308 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS31-PA | 376 | CG5904-PA | 1..376 | 1..376 | 1937 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13413-PA | 386 | GI13413-PA | 1..381 | 1..374 | 1285 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12749-PA | 381 | GL12749-PA | 1..381 | 1..376 | 1530 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19216-PA | 381 | GA19216-PA | 1..381 | 1..376 | 1523 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25574-PA | 376 | GM25574-PA | 1..376 | 1..376 | 1960 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14588-PA | 376 | GD14588-PA | 1..376 | 1..376 | 1957 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11537-PA | 389 | GJ11537-PA | 1..389 | 1..376 | 1305 | 67.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24510-PA | 384 | GK24510-PA | 1..384 | 1..376 | 1157 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22882-PA | 376 | GE22882-PA | 1..376 | 1..376 | 1860 | 95.5 | Plus |
Translation from 93 to 1223
> RH12051.hyp MLAVRSSQRLGLRSLLPSAFKNVGLVNYSSSQSKNDDGYSSSDDEKPTKK KEEPVETAAQRLNRLLGTMQATDQLSASDFPRPGDANRKRREAQKQEAAA KNVLTAAKNIASMLGTSESDKKQTESELLAKLLGHGSESSSAATGENQTA DVSGSPSGDKELNLSDIIVGMKIDRRQQPQQVEQTRGEYVRRSLASRFKP QNRDGAYQRSQRQTKREAESFTGSVNLYGGEPLGIFKDTQLPISNDILST WSQLSERELSLQASHPPANYFEQMVLWTDQKKVWRFPINNEQDWEDEHNV DFSEHIFLEQHLEDWCPSKGPIRHFMELVCVGLSKNPYLTAQEKKDHIFW FRDYFQAKKDILRDLISKEPSKSISA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS31-PA | 376 | CG5904-PA | 1..376 | 1..376 | 1937 | 100 | Plus |