Clone RH12051 Report

Search the DGRC for RH12051

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:120
Well:51
Vector:pFlc-1
Associated Gene/TranscriptmRpS31-RA
Protein status:RH12051.pep: gold
Preliminary Size:1212
Sequenced Size:1289

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5904 2002-01-01 Sim4 clustering to Release 2
CG5904 2002-02-22 Blastp of sequenced clone
CG5904 2003-01-01 Sim4 clustering to Release 3
mRpS31 2008-04-29 Release 5.5 accounting
mRpS31 2008-08-15 Release 5.9 accounting
mRpS31 2008-12-18 5.12 accounting

Clone Sequence Records

RH12051.complete Sequence

1289 bp (1289 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089653

> RH12051.complete
GATCTGGTCTGGCAACTCTCCGCCGAATTGTTGTTACGCGAGCGATTTCT
TTGGTCTTATTTCTAGTTAAAATTATCAAAGAAATATTATAAAATGTTGG
CCGTACGAAGTTCCCAGAGATTGGGCCTACGTTCCCTGCTACCGTCTGCC
TTCAAAAACGTGGGATTGGTCAACTACTCCTCTTCGCAGTCCAAAAACGA
CGATGGATACTCCTCTTCGGACGACGAAAAGCCCACGAAGAAGAAGGAGG
AACCTGTGGAAACGGCGGCCCAGCGGCTGAACCGCCTGTTGGGCACCATG
CAGGCCACGGATCAGCTCTCGGCATCGGACTTTCCACGTCCTGGTGATGC
CAACAGGAAGCGGAGGGAGGCCCAGAAACAGGAGGCAGCCGCCAAGAATG
TTCTAACTGCGGCCAAGAACATTGCTAGCATGCTGGGCACCAGTGAGAGC
GACAAGAAGCAGACAGAGTCTGAGCTATTGGCCAAACTCCTTGGCCATGG
AAGCGAGTCCTCTTCAGCAGCGACCGGAGAAAATCAGACGGCGGATGTTT
CGGGATCTCCTTCTGGTGATAAGGAACTCAATCTGAGTGATATTATCGTG
GGCATGAAGATCGATCGTCGTCAGCAGCCGCAGCAGGTGGAGCAGACCCG
CGGCGAGTACGTTCGCCGCTCGCTGGCTTCCAGATTCAAGCCACAGAATC
GAGATGGGGCTTATCAGCGGTCACAGAGGCAAACCAAACGAGAGGCTGAA
TCCTTTACGGGCAGTGTCAATTTGTACGGCGGGGAACCGTTGGGTATCTT
CAAGGATACCCAGCTGCCGATTTCCAACGACATCCTTTCAACCTGGTCAC
AGCTGAGTGAGCGGGAGCTTAGTTTACAAGCTTCCCATCCCCCGGCAAAC
TACTTCGAGCAAATGGTCCTGTGGACGGATCAAAAGAAGGTGTGGCGCTT
TCCCATCAACAATGAGCAGGATTGGGAGGACGAGCATAACGTGGACTTCT
CGGAACACATTTTTCTGGAACAACATCTCGAGGATTGGTGTCCTAGCAAG
GGGCCTATTCGCCATTTCATGGAGCTCGTCTGCGTCGGCTTGTCCAAGAA
TCCCTACTTGACTGCCCAGGAGAAGAAGGATCACATTTTCTGGTTCCGTG
ACTATTTCCAGGCCAAGAAGGACATTCTGAGGGATCTGATTAGCAAGGAG
CCAAGCAAAAGTATTTCTGCTTAATGTTTTTGTTTGAATATTTGTTAAAA
ATATATTTTTGCTTTATAAGACCAAAAAAAAAAAAAAAA

RH12051.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1357 mRpS31-RA 84..1357 2..1275 6370 100 Plus
mRpS31.a 1232 mRpS31.a 88..1232 131..1275 5725 100 Plus
mib1.a 3562 mib1.a 3513..3562 1275..1226 250 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15995717..15996404 586..1273 3395 99.6 Plus
chr3L 24539361 chr3L 15995196..15995652 131..587 2240 99.3 Plus
chr3L 24539361 chr3L 15995003..15995132 2..131 650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:22:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16005912..16006601 586..1275 3450 100 Plus
3L 28110227 3L 16005391..16005847 131..587 2285 100 Plus
3L 28110227 3L 16005198..16005327 2..131 650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15999012..15999701 586..1275 3450 100 Plus
3L 28103327 3L 15998491..15998947 131..587 2285 100 Plus
3L 28103327 3L 15998298..15998427 2..131 650 100 Plus
Blast to na_te.dros performed 2019-03-16 23:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1365..1420 1269..1212 123 70.7 Minus

RH12051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:44:35 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15995002..15995132 1..131 99 -> Plus
chr3L 15995197..15995652 132..587 99 -> Plus
chr3L 15995719..15996404 588..1273 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:24 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 1..1131 94..1224 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:07 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 1..1131 94..1224 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:23:32 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 1..1131 94..1224 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:07 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 1..1131 94..1224 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:15 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 1..1131 94..1224 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:27 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 2..1273 2..1273 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:07 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 2..1273 2..1273 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:23:32 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 5..1277 1..1273 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:07 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 2..1273 2..1273 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:15 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 5..1277 1..1273 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:35 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16005197..16005327 1..131 99 -> Plus
3L 16005392..16005847 132..587 100 -> Plus
3L 16005914..16006599 588..1273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:35 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16005197..16005327 1..131 99 -> Plus
3L 16005392..16005847 132..587 100 -> Plus
3L 16005914..16006599 588..1273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:44:35 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16005197..16005327 1..131 99 -> Plus
3L 16005392..16005847 132..587 100 -> Plus
3L 16005914..16006599 588..1273 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:23:32 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15998297..15998427 1..131 99 -> Plus
arm_3L 15998492..15998947 132..587 100 -> Plus
arm_3L 15999014..15999699 588..1273 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:10 Download gff for RH12051.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15998492..15998947 132..587 100 -> Plus
3L 15999014..15999699 588..1273 100   Plus
3L 15998297..15998427 1..131 99 -> Plus

RH12051.pep Sequence

Translation from 93 to 1223

> RH12051.pep
MLAVRSSQRLGLRSLLPSAFKNVGLVNYSSSQSKNDDGYSSSDDEKPTKK
KEEPVETAAQRLNRLLGTMQATDQLSASDFPRPGDANRKRREAQKQEAAA
KNVLTAAKNIASMLGTSESDKKQTESELLAKLLGHGSESSSAATGENQTA
DVSGSPSGDKELNLSDIIVGMKIDRRQQPQQVEQTRGEYVRRSLASRFKP
QNRDGAYQRSQRQTKREAESFTGSVNLYGGEPLGIFKDTQLPISNDILST
WSQLSERELSLQASHPPANYFEQMVLWTDQKKVWRFPINNEQDWEDEHNV
DFSEHIFLEQHLEDWCPSKGPIRHFMELVCVGLSKNPYLTAQEKKDHIFW
FRDYFQAKKDILRDLISKEPSKSISA*

RH12051.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24108-PA 374 GF24108-PA 1..374 1..376 1573 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15943-PA 377 GG15943-PA 1..377 1..376 1787 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14591-PA 388 GH14591-PA 1..388 1..376 1308 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-PA 376 CG5904-PA 1..376 1..376 1937 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13413-PA 386 GI13413-PA 1..381 1..374 1285 69.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12749-PA 381 GL12749-PA 1..381 1..376 1530 79.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19216-PA 381 GA19216-PA 1..381 1..376 1523 79.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25574-PA 376 GM25574-PA 1..376 1..376 1960 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14588-PA 376 GD14588-PA 1..376 1..376 1957 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11537-PA 389 GJ11537-PA 1..389 1..376 1305 67.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24510-PA 384 GK24510-PA 1..384 1..376 1157 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22882-PA 376 GE22882-PA 1..376 1..376 1860 95.5 Plus

RH12051.hyp Sequence

Translation from 93 to 1223

> RH12051.hyp
MLAVRSSQRLGLRSLLPSAFKNVGLVNYSSSQSKNDDGYSSSDDEKPTKK
KEEPVETAAQRLNRLLGTMQATDQLSASDFPRPGDANRKRREAQKQEAAA
KNVLTAAKNIASMLGTSESDKKQTESELLAKLLGHGSESSSAATGENQTA
DVSGSPSGDKELNLSDIIVGMKIDRRQQPQQVEQTRGEYVRRSLASRFKP
QNRDGAYQRSQRQTKREAESFTGSVNLYGGEPLGIFKDTQLPISNDILST
WSQLSERELSLQASHPPANYFEQMVLWTDQKKVWRFPINNEQDWEDEHNV
DFSEHIFLEQHLEDWCPSKGPIRHFMELVCVGLSKNPYLTAQEKKDHIFW
FRDYFQAKKDILRDLISKEPSKSISA*

RH12051.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-PA 376 CG5904-PA 1..376 1..376 1937 100 Plus