BDGP Sequence Production Resources |
Search the DGRC for RH12261
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 122 |
Well: | 61 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13123-RA |
Protein status: | RH12261.pep: gold |
Preliminary Size: | 972 |
Sequenced Size: | 1102 |
Gene | Date | Evidence |
---|---|---|
CG13123 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13123 | 2002-03-28 | Blastp of sequenced clone |
CG13123 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13123 | 2008-04-29 | Release 5.5 accounting |
CG13123 | 2008-08-15 | Release 5.9 accounting |
CG13123 | 2008-12-18 | 5.12 accounting |
1102 bp (1102 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094905
> RH12261.complete GACACTGTTGTTTACATGGCTGCATTTCTTTGAATGTATTTATATTAACA TTAACATTACAGTTTATTTACATTAATTAAATAATAAAACCCATGGACCT GCGTAAACTGTGCCGCATTTGCTTCGTGGACAGCGCTTCGGTGGATATAC GGGAGCACAGGAGCGGTGGCAGTTCGGATCAGACAGTCCTCCAGCTGATA GAAGCCATGTTCGGCTGGAACATAGCACTTAATCTTACTGAGGAGCTGCC CATGATCTGTAATGATTGCTTGGAAGATTGCCTGCAGCAGTACGCCTTCT TCAGGAAGCTAACGTTCGCCAATCAGCAGCTACTGCAGCTCTACAACGAG GCGGAGGTAGAAATGTGCCAAGTTAAGATGGACGCAACGGAGGAAGAGCC CGAAAACCAGGCTAGTGATGAATTCGAGATACTGGAGGAATTCAGGAGGA TACCACTGGATTATGTGGTTTTAGACCCCGATCGTCCTACAGAAACAAGA CAAACGAGGAGAAGGACGGATAGCTGTACGAAACCCTCTCAAAGGCTGGC CAACCAAGATTCGCTGATTGTCTCCGAGTTTTTACCTGCCACCACAGCCC AACCACGACTGGATCTATCCGACTCTCAGCTGGAGCAACTGGAATCCCCA GCATACGAGATGCGCACCGTGGACTATGCTGCCGTCGAACTGAAACACTA CAACCTGGACGAGTACAACGAGGCCAATCGCCTGCTGGACGTGGAGCCCA GTGGCAGCCAGGCCATCTACAAGTGCCAGTACTGCCCACTGGCTTATGCC TCGCCTCAATATCTGAAAACCCACGTGCGCAATTCGCACGTCTGCAAGTA CTGCACCACCGCCTTCGCCAAGGTTCGCGATCTCAATGAGCATATTCGGC AGAAGCATCCGCATCACCAGTGCGTTGTCTGCTCCAACAACTTTAGTACC AGTAGCAATCTGAGGGCTCACTTAAAGAAAATTCATGGAGTTCAGCTGCC CGCACAGGTGGCACTGCTGGATTACAGGCCAGCCAGTCAGGATCGGGATA ATCCGCGCTCATAATAAAGATTATATTACATAGTTAAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13123-RA | 1128 | CG13123-RA | 45..1128 | 2..1085 | 5420 | 100 | Plus |
CG13123.a | 1078 | CG13123.a | 2..1078 | 2..1085 | 5290 | 99.3 | Plus |
CG13123.b | 996 | CG13123.b | 45..996 | 134..1085 | 4760 | 100 | Plus |
CG13123.b | 996 | CG13123.b | 11..44 | 2..35 | 170 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tabor | 7345 | Tabor TABOR 7345bp | 812..885 | 340..414 | 111 | 64.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9790803..9791663 | 219..1085 | 99 | <- | Minus |
chr2L | 9791717..9791933 | 1..218 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..972 | 93..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..972 | 93..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..972 | 93..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..972 | 93..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..972 | 93..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..1083 | 2..1084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..1084 | 2..1085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 10..1094 | 1..1085 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 1..1083 | 2..1084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13123-RA | 10..1094 | 1..1085 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9792881..9793097 | 1..218 | 99 | Minus | |
2L | 9791961..9792827 | 219..1085 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9792881..9793097 | 1..218 | 99 | Minus | |
2L | 9791961..9792827 | 219..1085 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9792881..9793097 | 1..218 | 99 | Minus | |
2L | 9791961..9792827 | 219..1085 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9791961..9792827 | 219..1085 | 100 | <- | Minus |
arm_2L | 9792881..9793097 | 1..218 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9791961..9792827 | 219..1085 | 100 | <- | Minus |
2L | 9792881..9793097 | 1..218 | 99 | Minus |
Translation from 92 to 1063
> RH12261.pep MDLRKLCRICFVDSASVDIREHRSGGSSDQTVLQLIEAMFGWNIALNLTE ELPMICNDCLEDCLQQYAFFRKLTFANQQLLQLYNEAEVEMCQVKMDATE EEPENQASDEFEILEEFRRIPLDYVVLDPDRPTETRQTRRRTDSCTKPSQ RLANQDSLIVSEFLPATTAQPRLDLSDSQLEQLESPAYEMRTVDYAAVEL KHYNLDEYNEANRLLDVEPSGSQAIYKCQYCPLAYASPQYLKTHVRNSHV CKYCTTAFAKVRDLNEHIRQKHPHHQCVVCSNNFSTSSNLRAHLKKIHGV QLPAQVALLDYRPASQDRDNPRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21873-PA | 309 | GF21873-PA | 1..307 | 1..322 | 1072 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24005-PA | 321 | GG24005-PA | 1..321 | 1..323 | 1465 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13057-PA | 328 | GH13057-PA | 3..321 | 1..317 | 866 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13123-PA | 323 | CG13123-PA | 1..323 | 1..323 | 1703 | 100 | Plus |
CG13123-PC | 270 | CG13123-PC | 1..270 | 54..323 | 1430 | 100 | Plus |
CG13123-PB | 270 | CG13123-PB | 1..270 | 54..323 | 1430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18201-PA | 342 | GI18201-PA | 3..332 | 1..318 | 892 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19207-PA | 346 | GL19207-PA | 1..345 | 1..321 | 822 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12061-PA | 346 | GA12061-PA | 1..345 | 1..321 | 829 | 52.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12244-PA | 321 | GM12244-PA | 1..321 | 1..323 | 1611 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22334-PA | 321 | GD22334-PA | 1..321 | 1..323 | 1646 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14699-PA | 320 | GJ14699-PA | 3..315 | 1..323 | 883 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24145-PA | 295 | GK24145-PA | 1..291 | 1..317 | 673 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10303-PA | 321 | GE10303-PA | 1..321 | 1..323 | 1532 | 88.9 | Plus |
Translation from 92 to 1063
> RH12261.hyp MDLRKLCRICFVDSASVDIREHRSGGSSDQTVLQLIEAMFGWNIALNLTE ELPMICNDCLEDCLQQYAFFRKLTFANQQLLQLYNEAEVEMCQVKMDATE EEPENQASDEFEILEEFRRIPLDYVVLDPDRPTETRQTRRRTDSCTKPSQ RLANQDSLIVSEFLPATTAQPRLDLSDSQLEQLESPAYEMRTVDYAAVEL KHYNLDEYNEANRLLDVEPSGSQAIYKCQYCPLAYASPQYLKTHVRNSHV CKYCTTAFAKVRDLNEHIRQKHPHHQCVVCSNNFSTSSNLRAHLKKIHGV QLPAQVALLDYRPASQDRDNPRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13123-PA | 323 | CG13123-PA | 1..323 | 1..323 | 1703 | 100 | Plus |
CG13123-PC | 270 | CG13123-PC | 1..270 | 54..323 | 1430 | 100 | Plus |
CG13123-PB | 270 | CG13123-PB | 1..270 | 54..323 | 1430 | 100 | Plus |