Clone RH12920 Report

Search the DGRC for RH12920

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:129
Well:20
Vector:pFlc-1
Associated Gene/TranscriptInos-RA
Protein status:RH12920.pep: gold
Sequenced Size:1991

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11143 2002-11-06 Blastp of sequenced clone
CG11143 2003-01-01 Sim4 clustering to Release 3
Inos 2008-04-29 Release 5.5 accounting
Inos 2008-08-15 Release 5.9 accounting
Inos 2008-12-18 5.12 accounting

Clone Sequence Records

RH12920.complete Sequence

1991 bp (1991 high quality bases) assembled on 2002-11-06

GenBank Submission: BT001772

> RH12920.complete
GATTCGCCGCGAACTTTTGCCTCGACCACATCGCAGTCTCTTTTGCAGAA
GCCAGGAATTCCAGAAGCAAGCACATTGAAACGCGCTAATTGACAAGACG
AGAGTGTGTTAGCAAAAACATCCCAGAATGAAGCCCACCAATAACTCAAC
CCTGGAGGTAATCTCGCCGAAAGTGCAGGTGGACGATGAGTTCATCACCA
CCGACTACGATTACCAGACATCCCATGTGAAGCGCACCGCCGATGGACAG
CTCCAGGTGCACCCCCAGACGACGTCGCTGAAGATACGGACGGGTCGCCA
TGTGCCCAAGCTGGGCGTGATGCTGGTGGGATGGGGTGGCAACAACGGAT
CCACGCTGACCGCCGCCCTGGAGGCCAATCGTCGCCAGCTGAAGTGGCGC
AAGCGGACGGGCGTCCAGGAGGCCAACTGGTATGGTTCCATTACACAGGC
GTCCACCGTCTTCATTGGATCCGATGAGGACGGCGGTGACGTGTACGTGC
CCATGAAGGAGCTGCTGCCCATGGTGGAGCCCGACAACATTATCGTGGAT
GGCTGGGATATCAGTGGCCTGCATTTGGGCGACGCCATGCGCAGGGCCGA
GGTCCTAGACGTGGCTCTGCAGGATCAGATCTACGATCAGTTGGCTCAGT
TGCGCCCACGTCCATCCATCTACGACCCCGACTTCATCGCGGCCAATCAG
TCGGATCGGGCTGACAACGTGATCCGTGGCACTCGTCTGGAGCAGTACGA
GCAAATCCGGAAGGACATCCGCGACTTCCGCGAGCGCAGTGGCGTCGATT
CGGTCATCGTCCTCTGGACTGCCAACACGGAGCGCTTCGCGGATGTCCAG
CCTGGTCTGAACACCACCAGCCAGGAGCTCATCGCCTCCCTGGAGGCCAA
CCACTCGGAGGTGTCACCCTCCACGATCTTCGCAATGGCCAGCATCGCCG
AGGGGTGCACCTACATCAACGGCTCTCCGCAGAACACCTTTGTGCCCGGA
CTGATCCAGCTGGCCGAGGAGAAGAATGTTTTCATTGCCGGCGATGACTT
CAAGTCCGGTCAGACCAAGATCAAGAGCGTGTTGGTAGATTTCCTGGTGG
GAGCTGGTATCAAGCCGGTGTCCATTGCCAGTTACAACCATCTGGGCAAC
AACGATGGCAAGAACTTGTCCGCTCCTCAACAGTTCCGCTCCAAGGAGAT
TTCCAAGAGCAACGTGGTGGACGACATGGTTGCCTCCAACAGGCTGTTGT
ACGGACCCGATGAGCACCCCGACCACGTCGTGGTAATCAAGTACGTGCCC
TATGTGGGCGACAGCAAGCGGGCCATGGATGAGTACACATCGGAGATCAT
GATGGGCGGCCACAACACCCTGGTGATCCACAACACCTGCGAGGACTCGC
TGCTGGCCACACCGCTCATTCTGGACCTGGTTATCCTCGGCGAGCTGAGC
ACTCGCATCCAGCTGCGCAATGCGGAGAAGGAATCCGCCCCGTGGGTTCC
CTTCAAGCCAGTGCTTTCCCTGCTGAGCTATCTGTGCAAGGCTCCACTGG
TGCCCCAGGGCTCCCAGGTGGTCAACTCGCTCTTCCGCCAGCGCGCCGCC
ATAGAGAATATCCTGCGTGGCTGCATTGGTCTGCCGCCCATCTCACACAT
GACCCTGGAGCAGCGGTTCGACTTTTCTACCATTACAAATGAGCCGCCTC
TAAAGAGGGTCAAGATCCTGGGCCAGCCCTGCTCCGTGGAATCGGTCACC
AATGGAAAGAAGCTCCATGCCAATGGACACTCCAATGGGTCCGCCAAGCT
GGCCACTAACGGCAATGGTCACTGATGGATGGCCGCATCCCTGATTTTCG
ATCGGAATATATAATTGGAATATATATGGTTTTAGTTGGATAAACTACGA
AATAGACTTAAGCTACTATTACTAACTGAATCGTTTAAATATAAAAAGGC
GTAATAGACTGTTGTCTGTATACCACAAAAAAAAAAAAAAA

RH12920.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Inos-RA 2097 Inos-RA 92..2074 2..1984 9900 99.9 Plus
Inos.a 2001 Inos.a 15..2001 2..1984 9835 99.7 Plus
nc_4874.a 367 nc_4874.a 1..102 155..256 510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3343502..3344203 955..254 3510 100 Minus
chr2R 21145070 chr2R 3342655..3343124 1666..1197 2350 100 Minus
chr2R 21145070 chr2R 3342275..3342585 1976..1666 1555 100 Minus
chr2R 21145070 chr2R 3345960..3346216 258..2 1285 100 Minus
chr2R 21145070 chr2R 3343187..3343430 1198..955 1220 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:22:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7456149..7456850 955..254 3510 100 Minus
2R 25286936 2R 7455302..7455771 1666..1197 2350 100 Minus
2R 25286936 2R 7454914..7455232 1984..1666 1580 99.7 Minus
2R 25286936 2R 7458607..7458863 258..2 1285 100 Minus
2R 25286936 2R 7455834..7456077 1198..955 1220 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7457348..7458049 955..254 3510 100 Minus
2R 25260384 2R 7456501..7456970 1666..1197 2350 100 Minus
2R 25260384 2R 7456113..7456431 1984..1666 1580 99.6 Minus
2R 25260384 2R 7459806..7460062 258..2 1285 100 Minus
2R 25260384 2R 7457033..7457276 1198..955 1220 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:48:32 has no hits.

RH12920.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:49:28 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3342275..3342584 1667..1976 100 <- Minus
chr2R 3342655..3343122 1199..1666 100 <- Minus
chr2R 3343187..3343429 956..1198 100 <- Minus
chr2R 3343502..3344200 257..955 100 <- Minus
chr2R 3345962..3346216 1..256 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:33 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 1..1698 128..1825 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:07:25 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 1..1698 128..1825 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:51 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 1..1698 128..1825 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:57:11 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 1..1698 128..1825 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:55:01 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 1..1698 128..1825 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:27:21 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 1..1975 2..1976 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:07:25 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 5..1980 1..1976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:51 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 11..1986 1..1976 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:57:11 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 1..1975 2..1976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:01 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
Inos-RA 11..1986 1..1976 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:28 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7454922..7455231 1667..1976 100 <- Minus
2R 7455302..7455769 1199..1666 100 <- Minus
2R 7455834..7456076 956..1198 100 <- Minus
2R 7456149..7456847 257..955 100 <- Minus
2R 7458609..7458863 1..256 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:28 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7454922..7455231 1667..1976 100 <- Minus
2R 7455302..7455769 1199..1666 100 <- Minus
2R 7455834..7456076 956..1198 100 <- Minus
2R 7456149..7456847 257..955 100 <- Minus
2R 7458609..7458863 1..256 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:28 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7454922..7455231 1667..1976 100 <- Minus
2R 7455302..7455769 1199..1666 100 <- Minus
2R 7455834..7456076 956..1198 100 <- Minus
2R 7456149..7456847 257..955 100 <- Minus
2R 7458609..7458863 1..256 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:51 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3343339..3343581 956..1198 100 <- Minus
arm_2R 3342427..3342736 1667..1976 100 <- Minus
arm_2R 3342807..3343274 1199..1666 100 <- Minus
arm_2R 3343654..3344352 257..955 100 <- Minus
arm_2R 3346114..3346368 1..256 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:29:44 Download gff for RH12920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7456121..7456430 1667..1976 100 <- Minus
2R 7456501..7456968 1199..1666 100 <- Minus
2R 7457033..7457275 956..1198 100 <- Minus
2R 7457348..7458046 257..955 100 <- Minus
2R 7459808..7460062 1..256 99   Minus

RH12920.pep Sequence

Translation from 127 to 1824

> RH12920.pep
MKPTNNSTLEVISPKVQVDDEFITTDYDYQTSHVKRTADGQLQVHPQTTS
LKIRTGRHVPKLGVMLVGWGGNNGSTLTAALEANRRQLKWRKRTGVQEAN
WYGSITQASTVFIGSDEDGGDVYVPMKELLPMVEPDNIIVDGWDISGLHL
GDAMRRAEVLDVALQDQIYDQLAQLRPRPSIYDPDFIAANQSDRADNVIR
GTRLEQYEQIRKDIRDFRERSGVDSVIVLWTANTERFADVQPGLNTTSQE
LIASLEANHSEVSPSTIFAMASIAEGCTYINGSPQNTFVPGLIQLAEEKN
VFIAGDDFKSGQTKIKSVLVDFLVGAGIKPVSIASYNHLGNNDGKNLSAP
QQFRSKEISKSNVVDDMVASNRLLYGPDEHPDHVVVIKYVPYVGDSKRAM
DEYTSEIMMGGHNTLVIHNTCEDSLLATPLILDLVILGELSTRIQLRNAE
KESAPWVPFKPVLSLLSYLCKAPLVPQGSQVVNSLFRQRAAIENILRGCI
GLPPISHMTLEQRFDFSTITNEPPLKRVKILGQPCSVESVTNGKKLHANG
HSNGSAKLATNGNGH*

RH12920.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11950-PA 565 GF11950-PA 1..565 1..565 2791 90.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10748-PA 565 GG10748-PA 1..565 1..565 2947 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20732-PA 561 GH20732-PA 1..561 1..565 2660 86.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Inos-PA 565 CG11143-PA 1..565 1..565 2921 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20816-PA 561 GI20816-PA 1..561 1..565 2701 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11560-PA 564 GL11560-PA 1..564 1..565 2807 91 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24769-PA 564 GA24769-PA 1..564 1..565 2807 91 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20794-PA 690 GM20794-PA 160..690 23..565 2770 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10256-PA 222 GD10256-PA 5..222 348..565 1141 97.7 Plus
Dsim\GD10255-PA 79 GD10255-PA 1..61 1..61 232 77 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20549-PA 564 GJ20549-PA 1..561 1..565 2624 85.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22009-PA 569 GK22009-PA 1..569 1..565 2641 85.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24003-PA 565 GE24003-PA 1..565 1..565 2939 96.1 Plus

RH12920.hyp Sequence

Translation from 127 to 1824

> RH12920.hyp
MKPTNNSTLEVISPKVQVDDEFITTDYDYQTSHVKRTADGQLQVHPQTTS
LKIRTGRHVPKLGVMLVGWGGNNGSTLTAALEANRRQLKWRKRTGVQEAN
WYGSITQASTVFIGSDEDGGDVYVPMKELLPMVEPDNIIVDGWDISGLHL
GDAMRRAEVLDVALQDQIYDQLAQLRPRPSIYDPDFIAANQSDRADNVIR
GTRLEQYEQIRKDIRDFRERSGVDSVIVLWTANTERFADVQPGLNTTSQE
LIASLEANHSEVSPSTIFAMASIAEGCTYINGSPQNTFVPGLIQLAEEKN
VFIAGDDFKSGQTKIKSVLVDFLVGAGIKPVSIASYNHLGNNDGKNLSAP
QQFRSKEISKSNVVDDMVASNRLLYGPDEHPDHVVVIKYVPYVGDSKRAM
DEYTSEIMMGGHNTLVIHNTCEDSLLATPLILDLVILGELSTRIQLRNAE
KESAPWVPFKPVLSLLSYLCKAPLVPQGSQVVNSLFRQRAAIENILRGCI
GLPPISHMTLEQRFDFSTITNEPPLKRVKILGQPCSVESVTNGKKLHANG
HSNGSAKLATNGNGH*

RH12920.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Inos-PA 565 CG11143-PA 1..565 1..565 2921 100 Plus