BDGP Sequence Production Resources |
Search the DGRC for RH12920
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 129 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Inos-RA |
Protein status: | RH12920.pep: gold |
Sequenced Size: | 1991 |
Gene | Date | Evidence |
---|---|---|
CG11143 | 2002-11-06 | Blastp of sequenced clone |
CG11143 | 2003-01-01 | Sim4 clustering to Release 3 |
Inos | 2008-04-29 | Release 5.5 accounting |
Inos | 2008-08-15 | Release 5.9 accounting |
Inos | 2008-12-18 | 5.12 accounting |
1991 bp (1991 high quality bases) assembled on 2002-11-06
GenBank Submission: BT001772
> RH12920.complete GATTCGCCGCGAACTTTTGCCTCGACCACATCGCAGTCTCTTTTGCAGAA GCCAGGAATTCCAGAAGCAAGCACATTGAAACGCGCTAATTGACAAGACG AGAGTGTGTTAGCAAAAACATCCCAGAATGAAGCCCACCAATAACTCAAC CCTGGAGGTAATCTCGCCGAAAGTGCAGGTGGACGATGAGTTCATCACCA CCGACTACGATTACCAGACATCCCATGTGAAGCGCACCGCCGATGGACAG CTCCAGGTGCACCCCCAGACGACGTCGCTGAAGATACGGACGGGTCGCCA TGTGCCCAAGCTGGGCGTGATGCTGGTGGGATGGGGTGGCAACAACGGAT CCACGCTGACCGCCGCCCTGGAGGCCAATCGTCGCCAGCTGAAGTGGCGC AAGCGGACGGGCGTCCAGGAGGCCAACTGGTATGGTTCCATTACACAGGC GTCCACCGTCTTCATTGGATCCGATGAGGACGGCGGTGACGTGTACGTGC CCATGAAGGAGCTGCTGCCCATGGTGGAGCCCGACAACATTATCGTGGAT GGCTGGGATATCAGTGGCCTGCATTTGGGCGACGCCATGCGCAGGGCCGA GGTCCTAGACGTGGCTCTGCAGGATCAGATCTACGATCAGTTGGCTCAGT TGCGCCCACGTCCATCCATCTACGACCCCGACTTCATCGCGGCCAATCAG TCGGATCGGGCTGACAACGTGATCCGTGGCACTCGTCTGGAGCAGTACGA GCAAATCCGGAAGGACATCCGCGACTTCCGCGAGCGCAGTGGCGTCGATT CGGTCATCGTCCTCTGGACTGCCAACACGGAGCGCTTCGCGGATGTCCAG CCTGGTCTGAACACCACCAGCCAGGAGCTCATCGCCTCCCTGGAGGCCAA CCACTCGGAGGTGTCACCCTCCACGATCTTCGCAATGGCCAGCATCGCCG AGGGGTGCACCTACATCAACGGCTCTCCGCAGAACACCTTTGTGCCCGGA CTGATCCAGCTGGCCGAGGAGAAGAATGTTTTCATTGCCGGCGATGACTT CAAGTCCGGTCAGACCAAGATCAAGAGCGTGTTGGTAGATTTCCTGGTGG GAGCTGGTATCAAGCCGGTGTCCATTGCCAGTTACAACCATCTGGGCAAC AACGATGGCAAGAACTTGTCCGCTCCTCAACAGTTCCGCTCCAAGGAGAT TTCCAAGAGCAACGTGGTGGACGACATGGTTGCCTCCAACAGGCTGTTGT ACGGACCCGATGAGCACCCCGACCACGTCGTGGTAATCAAGTACGTGCCC TATGTGGGCGACAGCAAGCGGGCCATGGATGAGTACACATCGGAGATCAT GATGGGCGGCCACAACACCCTGGTGATCCACAACACCTGCGAGGACTCGC TGCTGGCCACACCGCTCATTCTGGACCTGGTTATCCTCGGCGAGCTGAGC ACTCGCATCCAGCTGCGCAATGCGGAGAAGGAATCCGCCCCGTGGGTTCC CTTCAAGCCAGTGCTTTCCCTGCTGAGCTATCTGTGCAAGGCTCCACTGG TGCCCCAGGGCTCCCAGGTGGTCAACTCGCTCTTCCGCCAGCGCGCCGCC ATAGAGAATATCCTGCGTGGCTGCATTGGTCTGCCGCCCATCTCACACAT GACCCTGGAGCAGCGGTTCGACTTTTCTACCATTACAAATGAGCCGCCTC TAAAGAGGGTCAAGATCCTGGGCCAGCCCTGCTCCGTGGAATCGGTCACC AATGGAAAGAAGCTCCATGCCAATGGACACTCCAATGGGTCCGCCAAGCT GGCCACTAACGGCAATGGTCACTGATGGATGGCCGCATCCCTGATTTTCG ATCGGAATATATAATTGGAATATATATGGTTTTAGTTGGATAAACTACGA AATAGACTTAAGCTACTATTACTAACTGAATCGTTTAAATATAAAAAGGC GTAATAGACTGTTGTCTGTATACCACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3343502..3344203 | 955..254 | 3510 | 100 | Minus |
chr2R | 21145070 | chr2R | 3342655..3343124 | 1666..1197 | 2350 | 100 | Minus |
chr2R | 21145070 | chr2R | 3342275..3342585 | 1976..1666 | 1555 | 100 | Minus |
chr2R | 21145070 | chr2R | 3345960..3346216 | 258..2 | 1285 | 100 | Minus |
chr2R | 21145070 | chr2R | 3343187..3343430 | 1198..955 | 1220 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7456149..7456850 | 955..254 | 3510 | 100 | Minus |
2R | 25286936 | 2R | 7455302..7455771 | 1666..1197 | 2350 | 100 | Minus |
2R | 25286936 | 2R | 7454914..7455232 | 1984..1666 | 1580 | 99.7 | Minus |
2R | 25286936 | 2R | 7458607..7458863 | 258..2 | 1285 | 100 | Minus |
2R | 25286936 | 2R | 7455834..7456077 | 1198..955 | 1220 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7457348..7458049 | 955..254 | 3510 | 100 | Minus |
2R | 25260384 | 2R | 7456501..7456970 | 1666..1197 | 2350 | 100 | Minus |
2R | 25260384 | 2R | 7456113..7456431 | 1984..1666 | 1580 | 99.6 | Minus |
2R | 25260384 | 2R | 7459806..7460062 | 258..2 | 1285 | 100 | Minus |
2R | 25260384 | 2R | 7457033..7457276 | 1198..955 | 1220 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3342275..3342584 | 1667..1976 | 100 | <- | Minus |
chr2R | 3342655..3343122 | 1199..1666 | 100 | <- | Minus |
chr2R | 3343187..3343429 | 956..1198 | 100 | <- | Minus |
chr2R | 3343502..3344200 | 257..955 | 100 | <- | Minus |
chr2R | 3345962..3346216 | 1..256 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 1..1698 | 128..1825 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 1..1698 | 128..1825 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 1..1698 | 128..1825 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 1..1698 | 128..1825 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 1..1698 | 128..1825 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 1..1975 | 2..1976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 5..1980 | 1..1976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 11..1986 | 1..1976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 1..1975 | 2..1976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Inos-RA | 11..1986 | 1..1976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7454922..7455231 | 1667..1976 | 100 | <- | Minus |
2R | 7455302..7455769 | 1199..1666 | 100 | <- | Minus |
2R | 7455834..7456076 | 956..1198 | 100 | <- | Minus |
2R | 7456149..7456847 | 257..955 | 100 | <- | Minus |
2R | 7458609..7458863 | 1..256 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7454922..7455231 | 1667..1976 | 100 | <- | Minus |
2R | 7455302..7455769 | 1199..1666 | 100 | <- | Minus |
2R | 7455834..7456076 | 956..1198 | 100 | <- | Minus |
2R | 7456149..7456847 | 257..955 | 100 | <- | Minus |
2R | 7458609..7458863 | 1..256 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7454922..7455231 | 1667..1976 | 100 | <- | Minus |
2R | 7455302..7455769 | 1199..1666 | 100 | <- | Minus |
2R | 7455834..7456076 | 956..1198 | 100 | <- | Minus |
2R | 7456149..7456847 | 257..955 | 100 | <- | Minus |
2R | 7458609..7458863 | 1..256 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3343339..3343581 | 956..1198 | 100 | <- | Minus |
arm_2R | 3342427..3342736 | 1667..1976 | 100 | <- | Minus |
arm_2R | 3342807..3343274 | 1199..1666 | 100 | <- | Minus |
arm_2R | 3343654..3344352 | 257..955 | 100 | <- | Minus |
arm_2R | 3346114..3346368 | 1..256 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7456121..7456430 | 1667..1976 | 100 | <- | Minus |
2R | 7456501..7456968 | 1199..1666 | 100 | <- | Minus |
2R | 7457033..7457275 | 956..1198 | 100 | <- | Minus |
2R | 7457348..7458046 | 257..955 | 100 | <- | Minus |
2R | 7459808..7460062 | 1..256 | 99 | Minus |
Translation from 127 to 1824
> RH12920.pep MKPTNNSTLEVISPKVQVDDEFITTDYDYQTSHVKRTADGQLQVHPQTTS LKIRTGRHVPKLGVMLVGWGGNNGSTLTAALEANRRQLKWRKRTGVQEAN WYGSITQASTVFIGSDEDGGDVYVPMKELLPMVEPDNIIVDGWDISGLHL GDAMRRAEVLDVALQDQIYDQLAQLRPRPSIYDPDFIAANQSDRADNVIR GTRLEQYEQIRKDIRDFRERSGVDSVIVLWTANTERFADVQPGLNTTSQE LIASLEANHSEVSPSTIFAMASIAEGCTYINGSPQNTFVPGLIQLAEEKN VFIAGDDFKSGQTKIKSVLVDFLVGAGIKPVSIASYNHLGNNDGKNLSAP QQFRSKEISKSNVVDDMVASNRLLYGPDEHPDHVVVIKYVPYVGDSKRAM DEYTSEIMMGGHNTLVIHNTCEDSLLATPLILDLVILGELSTRIQLRNAE KESAPWVPFKPVLSLLSYLCKAPLVPQGSQVVNSLFRQRAAIENILRGCI GLPPISHMTLEQRFDFSTITNEPPLKRVKILGQPCSVESVTNGKKLHANG HSNGSAKLATNGNGH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11950-PA | 565 | GF11950-PA | 1..565 | 1..565 | 2791 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10748-PA | 565 | GG10748-PA | 1..565 | 1..565 | 2947 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20732-PA | 561 | GH20732-PA | 1..561 | 1..565 | 2660 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Inos-PA | 565 | CG11143-PA | 1..565 | 1..565 | 2921 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20816-PA | 561 | GI20816-PA | 1..561 | 1..565 | 2701 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11560-PA | 564 | GL11560-PA | 1..564 | 1..565 | 2807 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24769-PA | 564 | GA24769-PA | 1..564 | 1..565 | 2807 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20794-PA | 690 | GM20794-PA | 160..690 | 23..565 | 2770 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10256-PA | 222 | GD10256-PA | 5..222 | 348..565 | 1141 | 97.7 | Plus |
Dsim\GD10255-PA | 79 | GD10255-PA | 1..61 | 1..61 | 232 | 77 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20549-PA | 564 | GJ20549-PA | 1..561 | 1..565 | 2624 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22009-PA | 569 | GK22009-PA | 1..569 | 1..565 | 2641 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24003-PA | 565 | GE24003-PA | 1..565 | 1..565 | 2939 | 96.1 | Plus |
Translation from 127 to 1824
> RH12920.hyp MKPTNNSTLEVISPKVQVDDEFITTDYDYQTSHVKRTADGQLQVHPQTTS LKIRTGRHVPKLGVMLVGWGGNNGSTLTAALEANRRQLKWRKRTGVQEAN WYGSITQASTVFIGSDEDGGDVYVPMKELLPMVEPDNIIVDGWDISGLHL GDAMRRAEVLDVALQDQIYDQLAQLRPRPSIYDPDFIAANQSDRADNVIR GTRLEQYEQIRKDIRDFRERSGVDSVIVLWTANTERFADVQPGLNTTSQE LIASLEANHSEVSPSTIFAMASIAEGCTYINGSPQNTFVPGLIQLAEEKN VFIAGDDFKSGQTKIKSVLVDFLVGAGIKPVSIASYNHLGNNDGKNLSAP QQFRSKEISKSNVVDDMVASNRLLYGPDEHPDHVVVIKYVPYVGDSKRAM DEYTSEIMMGGHNTLVIHNTCEDSLLATPLILDLVILGELSTRIQLRNAE KESAPWVPFKPVLSLLSYLCKAPLVPQGSQVVNSLFRQRAAIENILRGCI GLPPISHMTLEQRFDFSTITNEPPLKRVKILGQPCSVESVTNGKKLHANG HSNGSAKLATNGNGH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Inos-PA | 565 | CG11143-PA | 1..565 | 1..565 | 2921 | 100 | Plus |