Clone RH13166 Report

Search the DGRC for RH13166

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:131
Well:66
Vector:pFlc-1
Associated Gene/TranscriptCG4267-RA
Protein status:RH13166.pep: gold
Preliminary Size:1301
Sequenced Size:1338

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4267 2002-01-01 Sim4 clustering to Release 2
CG4267 2002-03-28 Blastp of sequenced clone
CG4267 2003-01-01 Sim4 clustering to Release 3
CG4267 2008-04-29 Release 5.5 accounting
CG4267 2008-08-15 Release 5.9 accounting
CG4267 2008-12-18 5.12 accounting

Clone Sequence Records

RH13166.complete Sequence

1338 bp (1338 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094909

> RH13166.complete
GAGTTGGTTGCGCACGCACCAGTCGACCGGTCAGATCTGCGGCTTATTCC
GCCGGCGTTCGAAATTTATAACGGTGGAGATCGGTCATCGGACGCACTAC
ACTCGATCGGTCAGAAGCCCCGAGGGAGATATCTTGGAACAGCCATGATC
TCGCAGCTGGGACGGATTAGCATCATGAGTGCGGTGCTTTTGGCATTTGC
GGCCATCGTATTTGCCAGCAGCTCGGAGAAAACCGAACTCGATCCCAATG
CCACCTGCAACTACACGCTGGTGAAGAAGAAGACCTTGGGGGTGGATCCC
TCGTTCTGGAAGAAGTTCTTCAAGCACCTCATACCCTTCACGAGTTCGAG
GGGCAAAATGCAGTTCATACTCTTCAAGCGGGACTTCGCGGACTGCGGAA
GGGAACTGTTCGTGGGCGATGTGGAAAACCTGAGGAACTCGGGCTTCGAT
GCACGTCATCAAACAAGGATAGTCATTCATGGCTGGATGAGTCAGAGCAA
AGGTTCGCATATAAGGAAGGTTAAGAACGCATACCTCAGCCTGACCGATC
CGGGACCCAACGGAGAGCCCGCCCCCTACGAGGACTTCAATGTGATCGTA
TGTGACTGGAGCAAGACTTCCACGAACGTAAACTACTACGAGGTGGCCAA
GACGGTGGAGGACATGGGAGCCCTGCTGGCGGAACTGGTGCGCTATCTGA
ACCAGGAGGCGAACATGCACTACGACGACGTATACGTCATTGGACACTCT
CTGGGAGCGCAGATCGCCGGCAGTGCTGGCAAGCAGATAATGCCATATCG
ATTCAACACCATATACGCTCTGGATCCGGCGGGTCCACAGTTCCGGGAGA
AGAGCGACGAGTACCGAATCGATGCTAGTGACGCCTCCTATGTGGAGTCC
ATTCAAACCAGCGTTAGCTTTGGCTTCGAGCAGCCCGTGGGACACGCCAC
CTTCTATCCCAACTATGGGAAGAATCAGAAGAAATGCTATGTCTATGGCT
GTTCTCATAAGAGATCCCATGACTACTTCATAGAGTCGCTGACGAGTCCG
GCGGGATTTTGGGGACCGCGCTGCGAGCGTCACGATGATGGCACCTGGCT
GCTCCTAATGAGCGATGGAGAGTTCCGGATGGGCGGGGAGCCCTCAATCC
CCAAGAACGGAACTTTCTATGTGAAAACCTACTCAAAGCCACCCTATGCC
ATGGGCCACAGGTGGCAAACGGAACCGCCTCCACGGGAAGATGATATTGA
GAACTCCACGGAAGAGTAGGATATTAGTTAATATGTGTACATTTGTTGAT
GAAATAGAAGTTTGGTATTTATAAAAAAAAAAAAAAAA

RH13166.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RA 1626 CG4267-RA 219..1541 2..1324 6615 100 Plus
CG4267.a 1319 CG4267.a 2..1319 2..1323 6525 99.6 Plus
CG4267.b 1318 CG4267.b 2..1318 2..1323 6510 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2243309..2244165 466..1322 4210 99.4 Plus
chr2L 23010047 chr2L 2242445..2242699 214..468 1245 99.2 Plus
chr2L 23010047 chr2L 2242132..2242344 2..214 1020 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:22:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2243558..2244416 466..1324 4295 100 Plus
2L 23513712 2L 2242692..2242946 214..468 1275 100 Plus
2L 23513712 2L 2242379..2242591 2..214 1065 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2243558..2244416 466..1324 4295 100 Plus
2L 23513712 2L 2242692..2242946 214..468 1275 100 Plus
2L 23513712 2L 2242379..2242591 2..214 1065 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:04:54 has no hits.

RH13166.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:05:49 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2242131..2242344 1..214 98 -> Plus
chr2L 2242446..2242698 215..467 99 -> Plus
chr2L 2243311..2244165 468..1322 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:37 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 1..1125 145..1269 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:22:48 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 1..1125 145..1269 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:43:51 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 1..1125 145..1269 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:21 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 1..1125 145..1269 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:39 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 1..1125 145..1269 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:49:44 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 2..1322 2..1322 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:22:48 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 1..1321 2..1322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:43:51 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 2..1322 2..1322 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:22 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 2..1322 2..1322 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:39 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 2..1322 2..1322 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:49 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2242693..2242945 215..467 100 -> Plus
2L 2242378..2242591 1..214 99 -> Plus
2L 2243560..2244414 468..1322 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:49 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2242693..2242945 215..467 100 -> Plus
2L 2242378..2242591 1..214 99 -> Plus
2L 2243560..2244414 468..1322 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:49 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2242693..2242945 215..467 100 -> Plus
2L 2242378..2242591 1..214 99 -> Plus
2L 2243560..2244414 468..1322 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:43:51 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2242378..2242591 1..214 99 -> Plus
arm_2L 2242693..2242945 215..467 100 -> Plus
arm_2L 2243560..2244414 468..1322 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:11 Download gff for RH13166.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2242378..2242591 1..214 99 -> Plus
2L 2242693..2242945 215..467 100 -> Plus
2L 2243560..2244414 468..1322 100   Plus

RH13166.hyp Sequence

Translation from 0 to 1268

> RH13166.hyp
QLVAHAPVDRSDLRLIPPAFEIYNGGDRSSDALHSIGQKPRGRYLGTAMI
SQLGRISIMSAVLLAFAAIVFASSSEKTELDPNATCNYTLVKKKTLGVDP
SFWKKFFKHLIPFTSSRGKMQFILFKRDFADCGRELFVGDVENLRNSGFD
ARHQTRIVIHGWMSQSKGSHIRKVKNAYLSLTDPGPNGEPAPYEDFNVIV
CDWSKTSTNVNYYEVAKTVEDMGALLAELVRYLNQEANMHYDDVYVIGHS
LGAQIAGSAGKQIMPYRFNTIYALDPAGPQFREKSDEYRIDASDASYVES
IQTSVSFGFEQPVGHATFYPNYGKNQKKCYVYGCSHKRSHDYFIESLTSP
AGFWGPRCERHDDGTWLLLMSDGEFRMGGEPSIPKNGTFYVKTYSKPPYA
MGHRWQTEPPPREDDIENSTEE*

RH13166.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-PB 374 CG4267-PB 1..374 49..422 2014 100 Plus
CG4267-PA 374 CG4267-PA 1..374 49..422 2014 100 Plus
CG6675-PC 386 CG6675-PC 77..384 85..402 821 51.7 Plus
CG6675-PB 390 CG6675-PB 81..388 85..402 821 51.7 Plus
sxe2-PB 387 CG4979-PB 90..360 139..399 414 33.2 Plus

RH13166.pep Sequence

Translation from 144 to 1268

> RH13166.pep
MISQLGRISIMSAVLLAFAAIVFASSSEKTELDPNATCNYTLVKKKTLGV
DPSFWKKFFKHLIPFTSSRGKMQFILFKRDFADCGRELFVGDVENLRNSG
FDARHQTRIVIHGWMSQSKGSHIRKVKNAYLSLTDPGPNGEPAPYEDFNV
IVCDWSKTSTNVNYYEVAKTVEDMGALLAELVRYLNQEANMHYDDVYVIG
HSLGAQIAGSAGKQIMPYRFNTIYALDPAGPQFREKSDEYRIDASDASYV
ESIQTSVSFGFEQPVGHATFYPNYGKNQKKCYVYGCSHKRSHDYFIESLT
SPAGFWGPRCERHDDGTWLLLMSDGEFRMGGEPSIPKNGTFYVKTYSKPP
YAMGHRWQTEPPPREDDIENSTEE*

RH13166.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14612-PA 377 GF14612-PA 1..377 1..374 1745 83.8 Plus
Dana\GF23710-PA 392 GF23710-PA 72..388 28..354 828 49.1 Plus
Dana\GF16154-PA 378 GF16154-PA 86..373 91..374 414 32.2 Plus
Dana\GF22961-PA 336 GF22961-PA 63..333 72..352 384 34.6 Plus
Dana\GF17270-PA 419 GF17270-PA 133..398 92..351 378 34.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24841-PA 374 GG24841-PA 1..374 1..374 1866 94.1 Plus
Dere\GG21467-PA 392 GG21467-PA 83..392 37..356 794 49.5 Plus
Dere\GG16977-PA 387 GG16977-PA 90..361 91..352 420 33.3 Plus
Dere\GG12238-PA 435 GG12238-PA 153..419 92..354 400 34.9 Plus
Dere\GG12150-PA 339 GG12150-PA 61..336 68..352 379 35.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13087-PA 333 GH13087-PA 2..330 58..373 1133 66.5 Plus
Dgri\GH11279-PA 387 GH11279-PA 49..386 3..354 836 48.7 Plus
Dgri\GH18764-PA 357 GH18764-PA 63..345 91..368 399 32.2 Plus
Dgri\GH18611-PA 495 GH18611-PA 227..490 92..352 399 34.5 Plus
Dgri\GH18958-PA 338 GH18958-PA 59..338 67..355 387 34.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-PB 374 CG4267-PB 1..374 1..374 2014 100 Plus
CG4267-PA 374 CG4267-PA 1..374 1..374 2014 100 Plus
CG6675-PC 386 CG6675-PC 77..384 37..354 821 51.7 Plus
CG6675-PB 390 CG6675-PB 81..388 37..354 821 51.7 Plus
sxe2-PB 387 CG4979-PB 90..360 91..351 414 33.2 Plus
sxe2-PA 387 CG4979-PA 90..360 91..351 414 33.2 Plus
CG4582-PA 432 CG4582-PA 150..415 92..353 401 34.7 Plus
CG6283-PA 339 CG6283-PA 61..335 68..351 366 34.6 Plus
CG17191-PA 337 CG17191-PA 63..333 72..351 365 34.7 Plus
CG6271-PA 341 CG6271-PA 68..339 72..353 361 34 Plus
CG6277-PA 341 CG6277-PA 68..339 72..353 359 33.3 Plus
CG17192-PA 337 CG17192-PA 47..281 56..300 357 35.3 Plus
CG7367-PD 358 CG7367-PD 104..351 101..354 357 34 Plus
CG7367-PB 358 CG7367-PB 104..351 101..354 357 34 Plus
CG7367-PC 389 CG7367-PC 135..382 101..354 357 34 Plus
CG6295-PA 338 CG6295-PA 86..338 95..355 346 35.1 Plus
CG13282-PB 484 CG13282-PB 103..360 95..361 323 32.1 Plus
CG13282-PA 484 CG13282-PA 103..360 95..361 323 32.1 Plus
CG6472-PB 389 CG6472-PB 41..332 69..356 311 30.6 Plus
CG6296-PA 676 CG6296-PA 67..344 68..354 298 29.4 Plus
CG14034-PC 338 CG14034-PC 81..314 135..357 297 30.8 Plus
CG14034-PB 338 CG14034-PB 81..314 135..357 297 30.8 Plus
CG34447-PA 389 CG34447-PA 59..316 92..354 273 29 Plus
CG34447-PB 389 CG34447-PB 59..316 92..354 273 29 Plus
CG6847-PB 1000 CG6847-PB 186..414 100..315 257 29.9 Plus
CG6847-PA 1000 CG6847-PA 186..414 100..315 257 29.9 Plus
CG18641-PC 369 CG18641-PC 62..353 64..354 255 27 Plus
CG34448-PA 344 CG34448-PA 61..323 92..354 252 30.2 Plus
CG1986-PB 404 CG1986-PB 78..345 88..351 247 27.9 Plus
CG1986-PA 404 CG1986-PA 78..345 88..351 247 27.9 Plus
CG5966-PA 540 CG5966-PA 70..335 64..311 238 26.5 Plus
CG10357-PC 321 CG10357-PC 56..316 108..354 229 28.2 Plus
CG5966-PB 436 CG5966-PB 2..231 100..311 216 26.7 Plus
CG18258-PA 468 CG18258-PA 146..455 36..359 200 28.2 Plus
CG17292-PD 340 CG17292-PD 50..322 96..365 186 23.9 Plus
CG17292-PC 340 CG17292-PC 50..322 96..365 186 23.9 Plus
CG17292-PB 340 CG17292-PB 50..322 96..365 186 23.9 Plus
CG17292-PA 340 CG17292-PA 50..322 96..365 186 23.9 Plus
CG5665-PB 376 CG5665-PB 109..366 97..361 181 27.5 Plus
CG5665-PC 395 CG5665-PC 214..385 197..361 171 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14146-PA 382 GI14146-PA 4..362 8..354 1272 68.1 Plus
Dmoj\GI24410-PA 388 GI24410-PA 81..387 38..354 852 51.1 Plus
Dmoj\GI22654-PA 432 GI22654-PA 130..422 88..368 426 33.7 Plus
Dmoj\GI10359-PA 394 GI10359-PA 128..391 92..354 396 34.1 Plus
Dmoj\GI21891-PA 340 GI21891-PA 66..337 72..352 383 35.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18712-PA 380 GL18712-PA 1..380 1..374 1577 77.7 Plus
Dper\GL26109-PA 380 GL26109-PA 71..378 37..354 829 52 Plus
Dper\GL23625-PA 339 GL23625-PA 61..336 68..352 389 34.4 Plus
Dper\GL27370-PA 465 GL27370-PA 250..447 92..299 383 39.2 Plus
Dper\GL12219-PA 392 GL12219-PA 84..384 88..370 380 30.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18069-PA 380 GA18069-PA 1..380 1..374 1579 78.3 Plus
Dpse\GA19771-PA 380 GA19771-PA 71..378 37..354 829 52 Plus
Dpse\GA18274-PA 461 GA18274-PA 185..452 92..356 404 34.8 Plus
Dpse\GA26669-PA 339 GA26669-PA 61..336 68..352 394 35.1 Plus
Dpse\GA19482-PA 341 GA19482-PA 68..341 72..355 376 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18324-PA 336 GM18324-PA 1..336 1..374 1596 84.1 Plus
Dsec\GM16157-PA 392 GM16157-PA 83..390 37..354 821 51.7 Plus
Dsec\GM24283-PA 387 GM24283-PA 90..383 91..374 424 32.2 Plus
Dsec\GM10237-PA 437 GM10237-PA 150..417 92..355 404 34.8 Plus
Dsec\GM10143-PA 339 GM10143-PA 61..336 68..352 379 34.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23140-PA 374 GD23140-PA 1..374 1..374 2007 97.9 Plus
Dsim\GD24346-PA 392 GD24346-PA 83..390 37..354 824 51.7 Plus
Dsim\GD19073-PA 387 GD19073-PA 90..383 91..374 424 32.2 Plus
Dsim\GD18190-PA 437 GD18190-PA 150..416 92..354 406 34.5 Plus
Dsim\GD18102-PA 339 GD18102-PA 61..336 68..352 373 34.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17493-PA 375 GJ17493-PA 1..372 11..373 1256 66.1 Plus
Dvir\GJ16194-PA 386 GJ16194-PA 79..385 38..354 830 49.7 Plus
Dvir\GJ23382-PA 353 GJ23382-PA 56..346 91..371 444 32.2 Plus
Dvir\GJ10211-PA 376 GJ10211-PA 110..373 92..354 400 34.9 Plus
Dvir\GJ24142-PA 341 GJ24142-PA 63..338 68..352 389 35.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14991-PA 304 GK14991-PA 1..299 72..374 1183 72.6 Plus
Dwil\GK18697-PA 362 GK18697-PA 54..361 38..354 811 50.8 Plus
Dwil\GK13261-PA 338 GK13261-PA 29..314 72..352 437 34.3 Plus
Dwil\GK14398-PA 440 GK14398-PA 165..428 92..351 387 32.9 Plus
Dwil\GK12042-PA 342 GK12042-PA 69..340 72..353 375 34.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18062-PA 375 GE18062-PA 1..375 1..374 1920 95.7 Plus
Dyak\GE12969-PA 392 GE12969-PA 83..392 37..356 817 50.5 Plus
Dyak\GE24368-PA 387 GE24368-PA 90..383 91..374 428 31.9 Plus
Dyak\GE10688-PA 444 GE10688-PA 160..431 92..359 401 34.3 Plus
Dyak\GE10597-PA 349 GE10597-PA 75..346 72..352 380 35.3 Plus