Clone RH13513 Report

Search the DGRC for RH13513

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:135
Well:13
Vector:pFlc-1
Associated Gene/TranscriptZip99C-RC
Protein status:RH13513.pep: gold
Preliminary Size:1242
Sequenced Size:1838

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7816 2002-10-18 Blastp of sequenced clone
CG7816 2003-01-01 Sim4 clustering to Release 3
CG7816 2008-04-29 Release 5.5 accounting
CG7816 2008-08-15 Release 5.9 accounting
CG7816 2008-12-18 5.12 accounting

Clone Sequence Records

RH13513.complete Sequence

1838 bp (1838 high quality bases) assembled on 2002-10-18

GenBank Submission: BT001774

> RH13513.complete
GATTGTATTTTCCGCACGGCCCTCGAACAAAGTAAACAAATGTATAAATG
CATGTGTTTTTGGCGAGCTTGTAACTGTTAGTGAAGCGACGCGCGGAGCG
ACGACATCAACATTAAGCCCGTGTTTCGAGTTAGGCGAGGCCAGGCGTAC
GTTTAACCCACGCAGAGCCCGGGCGAAATAAACGTAAATTCACGCAATTA
CTTCGCAGTAAAAAAAGCATCGGGTGCCAATGATCGCTACTACGCAATAG
AAAAGTAATTTATCATACAATTTCGCCACTGCAAAAATCGAAAGTTTCGG
GTTTTATTCCCTGCTATAAAAGTGATAAGAGCACGTTAACCCGTTCCTGT
TACAGCTGAATAACGCCGAGTCATCATCGATCACGGCACATACTCCACCG
AAAGTCACTGGACATGAGCAGGCAGCAGTGACTGAAGAAACCCAACCCAG
TTCCAGCACAGAGCAGCGCATAAGTAGCCGTAAAAAGGCAGCCGAAAATG
ACCACGAACAGCAGCTTCTTCGATGAACACATCGCCATGATATACTCCAA
CCTGATGGACCAGTACATGCCCGAGTACTTCAAAAGCTTTGAGTACACGC
CATGGGTTTTCTCCCTGCTGGGATCGGTGGTAATTGGACTGAGTGGCATA
TTCCCGCTGATCATCATTCCCACGGAGGAGAAAATGGCTAAGGAGGGATA
CAAAGATCCTGCAGATTCAAAACTCCTGCGAGTGCTTCTGAGTTTCGCGG
TCGGCGGTCTGCTGGGCGATGTGTTCCTTCACCTGTTGCCAGAAGCCTGG
GAGGGCGATAATCAAGATCCTTCTAGTCACCCATCCCTGCGCTCGGGCCT
TTGGGTACTTTCCGGCATACTGATCTTCACGATCGTGGAGAAAATCTTTT
CCGGATATGCCAGCGCGGACGAGGAGAACCCTCAGCCCAAGTGCGTGGAG
ATAGCCAACTGCCTGTTGCGTCGACATGGCGGCCAACTACCAGAGGGCGA
AACCTCTGAGAGTTGTGGCGGCGCCTGCGACATCGAAGATGTAGGTAAAG
TCTGTTTCCTACGCGAGCAGGAACAGAAGTCAAAGGAAAGGAAGGAACAG
CCGAAGAAGGTGGCTGGTTATCTGAACCTCTTGGCCAACTCAATTGACAA
TTTCACACACGGTCTAGCCGTGGCTGGATCCTTTTTGGTGTCCTTCAGAC
ACGGCATTCTAGCCACTTTTGCCATATTGCTTCATGAAATTCCGCACGAG
GTGGGGGATTTCGCAATCCTGCTTCGATCCGGATTCAGTCGCTGGGACGC
CGCGCGTGCGCAACTACTCACGGCGGGAGCTGGCCTGCTCGGTGCTCTGG
TGGCCATCGGAGGCTCCGGCGTAACGTCGGCCATGGAGGCACGTACTTCG
TGGATTATGCCGTTCACCGCCGGCGGCTTTCTGCACATTGCTCTGGTCAC
AGTATTACCTGATCTCTTGAAGGAGGAGGAGCGCAAGGAGTCCATTAAGC
AGCTGCTAGCACTGGTATTTGGCATTGCGTTAATGGCCGTGATGACCATG
CTATTCGAACACTAGGAACTTTAGCTGACAGCAGTATAAGAAGAAAATTG
AAAGCAGTTTTTAGTTTGTTCTAAGATTGTCATTGGCAGTTTTAAATTAA
CATGAATTTGTTGTACTTTATGGGATTCGACATCCTGTCTGCGTTATGTA
ATTATAGCCAATATGAATGATATTTAAACTATTATTAATGATTACGTATT
ACTGTATCATACTTATGAAACGAAAATTCAATAGACATTTAAGGGAGAGT
CCTTTGCCCTCCACTATCCACGAAAAAAAAAAAAAAAA

RH13513.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7816-RF 1908 CG7816-RF 44..1866 2..1824 9115 100 Plus
CG7816.b 1817 CG7816.b 1..1817 2..1824 9000 99.6 Plus
CG7816.c 1755 CG7816.c 297..1755 366..1824 7295 100 Plus
CG7816.c 1755 CG7816.c 44..296 2..254 1265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25686181..25686620 1822..1386 2120 99.3 Minus
chr3R 27901430 chr3R 25686896..25687312 1230..814 2025 99 Minus
chr3R 27901430 chr3R 25691003..25691366 365..2 1805 99.7 Minus
chr3R 27901430 chr3R 25687540..25687883 708..365 1690 99.4 Minus
chr3R 27901430 chr3R 25686678..25686833 1386..1231 780 100 Minus
chr3R 27901430 chr3R 25687372..25687479 816..709 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:22:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29863699..29864137 1824..1386 2195 100 Minus
3R 32079331 3R 29864413..29864829 1230..814 2085 100 Minus
3R 32079331 3R 29868533..29868896 365..2 1820 100 Minus
3R 32079331 3R 29865057..29865400 708..365 1720 100 Minus
3R 32079331 3R 29864195..29864350 1386..1231 780 100 Minus
3R 32079331 3R 29864889..29864996 816..709 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29604530..29604968 1824..1386 2195 100 Minus
3R 31820162 3R 29605244..29605660 1230..814 2085 100 Minus
3R 31820162 3R 29609364..29609727 365..2 1820 100 Minus
3R 31820162 3R 29605888..29606231 708..365 1720 100 Minus
3R 31820162 3R 29605026..29605181 1386..1231 780 100 Minus
3R 31820162 3R 29605720..29605827 816..709 540 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:53:11 has no hits.

RH13513.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:53:55 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25686181..25686619 1387..1822 99 <- Minus
chr3R 25686678..25686833 1231..1386 100 <- Minus
chr3R 25686896..25687309 817..1230 99 <- Minus
chr3R 25687372..25687479 709..816 100 <- Minus
chr3R 25687540..25687882 366..708 99 <- Minus
chr3R 25691003..25691366 1..365 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:38 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 1..1068 498..1565 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:10:11 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 1..1068 498..1565 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:28 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RH 1..1068 498..1565 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:01:02 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RD 1..1068 498..1565 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:32 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
Zip99C-RH 1..1068 498..1565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:31:21 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RF 1..1821 2..1822 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:10:10 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RF 1..1821 2..1822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:28 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RF 1..1820 3..1822 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:01:03 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
CG7816-RF 1..1821 2..1822 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:32 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
Zip99C-RF 1..1820 3..1822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:55 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29864195..29864350 1231..1386 100 <- Minus
3R 29863701..29864136 1387..1822 100 <- Minus
3R 29868533..29868896 1..365 99   Minus
3R 29864413..29864826 817..1230 100 <- Minus
3R 29864889..29864996 709..816 100 <- Minus
3R 29865057..29865399 366..708 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:55 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29864195..29864350 1231..1386 100 <- Minus
3R 29863701..29864136 1387..1822 100 <- Minus
3R 29868533..29868896 1..365 99   Minus
3R 29864413..29864826 817..1230 100 <- Minus
3R 29864889..29864996 709..816 100 <- Minus
3R 29865057..29865399 366..708 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:53:55 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29864195..29864350 1231..1386 100 <- Minus
3R 29863701..29864136 1387..1822 100 <- Minus
3R 29868533..29868896 1..365 99   Minus
3R 29864413..29864826 817..1230 100 <- Minus
3R 29864889..29864996 709..816 100 <- Minus
3R 29865057..29865399 366..708 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:28 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25689423..25689858 1387..1822 100 <- Minus
arm_3R 25689917..25690072 1231..1386 100 <- Minus
arm_3R 25690135..25690548 817..1230 100 <- Minus
arm_3R 25690611..25690718 709..816 100 <- Minus
arm_3R 25690779..25691121 366..708 100 <- Minus
arm_3R 25694255..25694618 1..365 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:38 Download gff for RH13513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29605720..29605827 709..816 100 <- Minus
3R 29604532..29604967 1387..1822 100 <- Minus
3R 29605026..29605181 1231..1386 100 <- Minus
3R 29605244..29605657 817..1230 100 <- Minus
3R 29605888..29606230 366..708 100 <- Minus
3R 29609364..29609727 1..365 99   Minus

RH13513.hyp Sequence

Translation from 497 to 1564

> RH13513.hyp
MTTNSSFFDEHIAMIYSNLMDQYMPEYFKSFEYTPWVFSLLGSVVIGLSG
IFPLIIIPTEEKMAKEGYKDPADSKLLRVLLSFAVGGLLGDVFLHLLPEA
WEGDNQDPSSHPSLRSGLWVLSGILIFTIVEKIFSGYASADEENPQPKCV
EIANCLLRRHGGQLPEGETSESCGGACDIEDVGKVCFLREQEQKSKERKE
QPKKVAGYLNLLANSIDNFTHGLAVAGSFLVSFRHGILATFAILLHEIPH
EVGDFAILLRSGFSRWDAARAQLLTAGAGLLGALVAIGGSGVTSAMEART
SWIMPFTAGGFLHIALVTVLPDLLKEEERKESIKQLLALVFGIALMAVMT
MLFEH*

RH13513.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Zip99C-PJ 355 CG7816-PJ 1..355 1..355 1825 100 Plus
Zip99C-PI 355 CG7816-PI 1..355 1..355 1825 100 Plus
Zip99C-PH 355 CG7816-PH 1..355 1..355 1825 100 Plus
Zip99C-PC 355 CG7816-PC 1..355 1..355 1825 100 Plus
Zip99C-PE 355 CG7816-PE 1..355 1..355 1825 100 Plus

RH13513.pep Sequence

Translation from 497 to 1564

> RH13513.pep
MTTNSSFFDEHIAMIYSNLMDQYMPEYFKSFEYTPWVFSLLGSVVIGLSG
IFPLIIIPTEEKMAKEGYKDPADSKLLRVLLSFAVGGLLGDVFLHLLPEA
WEGDNQDPSSHPSLRSGLWVLSGILIFTIVEKIFSGYASADEENPQPKCV
EIANCLLRRHGGQLPEGETSESCGGACDIEDVGKVCFLREQEQKSKERKE
QPKKVAGYLNLLANSIDNFTHGLAVAGSFLVSFRHGILATFAILLHEIPH
EVGDFAILLRSGFSRWDAARAQLLTAGAGLLGALVAIGGSGVTSAMEART
SWIMPFTAGGFLHIALVTVLPDLLKEEERKESIKQLLALVFGIALMAVMT
MLFEH*

RH13513.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16226-PA 357 GF16226-PA 1..357 1..355 1790 94.4 Plus
Dana\GF14692-PA 441 GF14692-PA 120..437 34..349 437 33.9 Plus
Dana\GF23796-PA 582 GF23796-PA 244..536 33..323 225 25 Plus
Dana\GF24332-PA 715 GF24332-PA 549..686 211..351 185 29.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11991-PA 355 GG11991-PA 1..355 1..355 1834 97.7 Plus
Dere\GG21151-PA 447 GG21151-PA 128..443 34..349 398 34.6 Plus
Dere\GG15710-PA 571 GG15710-PA 242..549 36..345 239 23.8 Plus
Dere\GG14322-PA 699 GG14322-PA 544..687 207..354 183 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13993-PA 355 GH13993-PA 1..355 1..355 1622 84.2 Plus
Dgri\GH10891-PA 376 GH10891-PA 63..372 36..349 409 34.9 Plus
Dgri\GH16665-PA 581 GH16665-PA 410..569 192..351 194 28.9 Plus
Dgri\GH22517-PA 570 GH22517-PA 409..550 207..351 187 28.8 Plus
Dgri\GH15311-PA 714 GH15311-PA 553..696 207..354 186 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Zip99C-PJ 355 CG7816-PJ 1..355 1..355 1825 100 Plus
Zip99C-PI 355 CG7816-PI 1..355 1..355 1825 100 Plus
Zip99C-PH 355 CG7816-PH 1..355 1..355 1825 100 Plus
Zip99C-PC 355 CG7816-PC 1..355 1..355 1825 100 Plus
Zip99C-PE 355 CG7816-PE 1..355 1..355 1825 100 Plus
Zip99C-PA 355 CG7816-PA 1..355 1..355 1825 100 Plus
Zip99C-PD 355 CG7816-PD 1..355 1..355 1825 100 Plus
Zip99C-PF 355 CG7816-PF 1..355 1..355 1825 100 Plus
Zip99C-PG 355 CG7816-PG 1..355 1..355 1825 100 Plus
Catsup-PA 449 CG10449-PA 130..445 34..349 461 34.9 Plus
Zip71B-PC 572 CG10006-PC 243..550 36..345 262 23.9 Plus
Zip71B-PB 572 CG10006-PB 243..550 36..345 262 23.9 Plus
foi-PD 706 CG6817-PD 545..685 208..351 196 28.6 Plus
foi-PC 706 CG6817-PC 545..685 208..351 196 28.6 Plus
foi-PB 706 CG6817-PB 545..685 208..351 196 28.6 Plus
foi-PA 706 CG6817-PA 545..685 208..351 196 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22338-PA 354 GI22338-PA 1..354 1..355 1659 87.9 Plus
Dmoj\GI13064-PA 437 GI13064-PA 109..433 36..349 389 35 Plus
Dmoj\GI11351-PA 579 GI11351-PA 406..567 190..351 201 29.8 Plus
Dmoj\GI12906-PA 702 GI12906-PA 538..676 207..353 192 31.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13475-PA 360 GL13475-PA 1..360 1..355 1727 90.3 Plus
Dper\GL18911-PA 448 GL18911-PA 120..447 34..352 401 34.8 Plus
Dper\GL24708-PA 575 GL24708-PA 250..566 36..355 238 24 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20606-PB 360 GA20606-PB 1..360 1..355 1727 90.3 Plus
Dpse\GA20606-PA 360 GA20606-PA 1..360 1..355 1727 90.3 Plus
Dpse\GA10324-PA 448 GA10324-PA 120..447 34..352 407 35.1 Plus
Dpse\GA10004-PA 575 GA10004-PA 250..566 36..355 238 24 Plus
Dpse\GA23845-PA 718 GA23845-PA 554..697 207..354 190 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12209-PA 355 GM12209-PA 1..355 1..355 1855 98.9 Plus
Dsec\GM17316-PA 434 GM17316-PA 115..430 34..349 378 35.1 Plus
Dsec\GM25497-PA 572 GM25497-PA 243..550 36..345 231 23.4 Plus
Dsec\GM25063-PA 705 GM25063-PA 543..684 207..351 187 28.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17600-PA 355 GD17600-PA 1..355 1..355 1855 98.9 Plus
Dsim\Catsup-PA 431 GD24175-PA 126..427 34..349 378 33.7 Plus
Dsim\GD14517-PA 572 GD14517-PA 243..550 36..345 236 23.4 Plus
Dsim\GD14101-PA 706 GD14101-PA 548..687 211..354 185 29.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10525-PA 355 GJ10525-PA 1..355 1..355 1719 89.6 Plus
Dvir\GJ11603-PA 435 GJ11603-PA 117..431 36..349 386 35.3 Plus
Dvir\GJ11605-PA 571 GJ11605-PA 234..559 33..355 228 24.8 Plus
Dvir\GJ13046-PA 697 GJ13046-PA 533..671 207..353 190 30.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13376-PA 355 GK13376-PA 1..355 1..355 1743 92.1 Plus
Dwil\GK24165-PA 441 GK24165-PA 100..437 25..349 404 35.1 Plus
Dwil\GK20356-PA 736 GK20356-PA 567..702 208..346 189 30 Plus
Dwil\GK10549-PA 441 GK10549-PA 208..427 33..264 183 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10416-PA 355 GE10416-PA 1..355 1..355 1850 98.3 Plus
Dyak\GE13224-PA 453 GE13224-PA 132..449 34..349 380 33.4 Plus
Dyak\GE22041-PA 571 GE22041-PA 395..549 191..345 196 31 Plus
Dyak\GE20750-PA 708 GE20750-PA 550..689 211..354 181 29.9 Plus