Clone RH13652 Report

Search the DGRC for RH13652

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:136
Well:52
Vector:pFlc-1
Associated Gene/TranscriptCG6044-RA
Protein status:RH13652.pep: gold
Preliminary Size:858
Sequenced Size:1482

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6044 2002-01-01 Sim4 clustering to Release 2
CG6044 2002-04-19 Blastp of sequenced clone
CG6044 2008-04-29 Release 5.5 accounting
CG6044 2008-08-15 Release 5.9 accounting
CG6044 2008-12-18 5.12 accounting

Clone Sequence Records

RH13652.complete Sequence

1482 bp (1482 high quality bases) assembled on 2002-04-19

GenBank Submission: AY113569

> RH13652.complete
GAGTCCTCGGCGAACAACAGAAACGATAACGACAGCCCACGCAAAAGAGC
TCAGAACTCACAAAAAACCCTGGTGACAAAACAAAGTTCAGTGTCTCGGC
CGCCGTTTATCCTCAAAGGTGGCAAAAAGCAAACTGGTTTGGAAACCACA
TAAAAAAAAATTTGAAAAAAGTGCAAAGGATTTCGAGAAGTGGATATTGG
CATACCCTCAATCATAAACAAGCAACTGAAATGAGGCATCTCTGGCTGCT
CCTTCTTATCGCCTGTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGC
CGGAGGCACTCCCAGCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGA
GGTGGAGCCGGGGGAGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAA
GGACTACGACTACGAGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCA
AGTCGACCGCTGATCCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGAT
GTGGATATCTATGTGCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCC
AGTTAAAAATTATAATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGA
AGGTACAGGTATCCAGCGGAATGAATATATTCAACCACATCTATGCCCTG
GACGAGCAGTTCTCCCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGA
GCGCTACGAGTGCGAGGTACTGCCGAACAAAGTGCGACACACGGCTACCA
TTCGCTTTGGCCCGGAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCA
CCGGCGGGCACATCTGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACG
GGACATTAGCCTCTGGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGG
CAGTGACCTTTCGGTTCTGAAGCAGTTTGAGTTCAAGACCGCTCCATAAA
TCTGCACCACCGGCATTACGTGATTACGTTTGGAGATGTGCACCGCAACA
GATGAGCTTGACATTGGGATGTAGCCCTCGGATAACGTCGATGGCCTGGC
AAATTTGCGATAGTTGTTTGCTTTGTTACTGTATTATATGGGAAAACGAT
TTTCCAGGGAAGCGAACTTCCCAGAGCTATAGGTTATTTAAATTTTACAC
TTCCAACTCAGCTTCCTCTACTTCCAATATCGATGTTTTAGACCTCATTT
GAAGTAAAATTGTTTGTAAGCCATTACTTGAACTTAGATACGCTACCTAT
AGGATCGAATTAGCCTAGTGTGATTGCTTTAGTATTGCGCTTAGTCGAGA
GATTAGTACATAATTGATTTTAACTTAGCGGAACAAAATGCGATACCAAG
TGGCTTACCGAATCATTGTGAAGGAAACTATATATATGTGAACAGATTAT
GAGTACATAAAAACAATGTATGCAATTTTGTCGAATGTAAAACTGAAATA
AACTAGAGCTGCTAAAGAAAAAAAAAAAAAAA

RH13652.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044.b 1656 CG6044.b 5..1471 2..1468 7335 100 Plus
CG6044-RA 1488 CG6044-RA 5..1471 2..1468 7335 100 Plus
CG6044-RE 1512 CG6044-RE 309..1495 282..1468 5935 100 Plus
CG6044-RE 1512 CG6044-RE 3..286 2..285 1420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18293969..18294869 567..1467 4460 99.7 Plus
chr2R 21145070 chr2R 18293556..18293840 283..567 1410 99.6 Plus
chr2R 21145070 chr2R 18290689..18290973 2..287 1380 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:22:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22407454..22408355 567..1468 4510 100 Plus
2R 25286936 2R 22404177..22404462 2..287 1430 100 Plus
2R 25286936 2R 22407040..22407325 282..567 1430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22408653..22409554 567..1468 4510 100 Plus
2R 25260384 2R 22408239..22408524 282..567 1430 100 Plus
2R 25260384 2R 22405376..22405661 2..287 1430 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:30:20 has no hits.

RH13652.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:30:58 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18290687..18290971 1..285 99 -> Plus
chr2R 18293559..18293840 286..567 99 -> Plus
chr2R 18293970..18294869 568..1467 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:40 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..690 231..920 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:03:48 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..690 231..920 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:14:37 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..690 231..920 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:18 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..690 231..920 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:09 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..690 231..920 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:34 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 3..1470 1..1467 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:03:47 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 3..1470 1..1467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:37 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..1466 2..1467 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:18 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 3..1470 1..1467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:09 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..1466 2..1467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:58 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22404175..22404460 1..285 99 -> Plus
2R 22407044..22407325 286..567 100 -> Plus
2R 22407455..22408354 568..1467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:58 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22404175..22404460 1..285 99 -> Plus
2R 22407044..22407325 286..567 100 -> Plus
2R 22407455..22408354 568..1467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:58 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22404175..22404460 1..285 99 -> Plus
2R 22407044..22407325 286..567 100 -> Plus
2R 22407455..22408354 568..1467 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:37 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18291680..18291965 1..285 99 -> Plus
arm_2R 18294549..18294830 286..567 100 -> Plus
arm_2R 18294960..18295859 568..1467 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:35 Download gff for RH13652.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22405374..22405659 1..285 99 -> Plus
2R 22408243..22408524 286..567 100 -> Plus
2R 22408654..22409553 568..1467 100   Plus

RH13652.pep Sequence

Translation from 230 to 919

> RH13652.pep
MRHLWLLLLIACGSVQFPGVLTLPEALPAKSSSAAGGGNGGGAGGAVTAP
SAGDTSKDYDYEEDQQRAPGNLAKSTADPKVPEPYFEHSDVDIYVPQNAT
SAKLECPVKNYNAAHHVVLWYKEKVQVSSGMNIFNHIYALDEQFSLTVPL
ASNATEERYECEVLPNKVRHTATIRFGPEPSTPAPSLLPAPAGTSASSVN
DSAAHGRDISLWLLGLFLAPLQLAVTFRF*

RH13652.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11888-PA 241 GF11888-PA 1..236 1..224 609 58.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22186-PA 228 GG22186-PA 1..228 1..229 1018 88.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21363-PA 547 GH21363-PA 440..512 108..181 162 44.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PG 229 CG6044-PG 1..229 1..229 1201 100 Plus
CG6044-PA 229 CG6044-PA 1..229 1..229 1201 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20558-PA 169 GI20558-PA 6..127 54..177 269 44.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17541-PA 222 GL17541-PA 1..209 1..213 522 53.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19317-PA 222 GA19317-PA 1..209 1..213 522 52.8 Plus
Dpse\GA19317-PC 209 GA19317-PC 7..196 20..213 439 50.8 Plus
Dpse\GA19317-PB 126 GA19317-PB 16..113 113..213 222 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15907-PA 228 GM15907-PA 1..228 1..229 1076 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11665-PA 228 GD11665-PA 1..228 1..229 1079 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22411-PA 171 GJ22411-PA 4..132 49..177 323 51.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14180-PA 237 GE14180-PA 1..237 1..229 997 89.1 Plus

RH13652.hyp Sequence

Translation from 230 to 919

> RH13652.hyp
MRHLWLLLLIACGSVQFPGVLTLPEALPAKSSSAAGGGNGGGAGGAVTAP
SAGDTSKDYDYEEDQQRAPGNLAKSTADPKVPEPYFEHSDVDIYVPQNAT
SAKLECPVKNYNAAHHVVLWYKEKVQVSSGMNIFNHIYALDEQFSLTVPL
ASNATEERYECEVLPNKVRHTATIRFGPEPSTPAPSLLPAPAGTSASSVN
DSAAHGRDISLWLLGLFLAPLQLAVTFRF*

RH13652.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PG 229 CG6044-PG 1..229 1..229 1201 100 Plus
CG6044-PA 229 CG6044-PA 1..229 1..229 1201 100 Plus