Clone RH13838 Report

Search the DGRC for RH13838

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:138
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG18528-RA
Protein status:RH13838.pep: gold
Preliminary Size:1539
Sequenced Size:1677

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18528 2001-12-17 Blastp of sequenced clone
CG18528 2002-01-01 Sim4 clustering to Release 2
CG18528 2003-01-01 Sim4 clustering to Release 3
CG18528 2008-04-29 Release 5.5 accounting
CG18528 2008-08-15 Release 5.9 accounting
CG18528 2008-12-18 5.12 accounting

Clone Sequence Records

RH13838.complete Sequence

1677 bp (1677 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071692

> RH13838.complete
GACACTTAATATCACGTTCAATTGTTTATTATTCGGCGGTTGGGATTTAA
TTGTTTTTCGGCGATGGCGCTTCTCAGAAACGCGTCCCAGAGCTTCTTGG
GCAGTTTCCGGCGCTTTGCCAGCAGCGGATGCACCATCTACAGCCTCAGT
TCCGGTCATGTCAAGTGCGGTGTGTCCGTGATCCGTGTCTCCGGGCCGCA
AACAAAGAAGGCCCTCCGAGCAATTGTTGCAAACAAAGAATACGAGCCAA
AGGCTCGTCAGGCGTATCTGAAATCCTTCTACCATCCCGCCAGCAAAGAG
ATGATTGACCGTGGGCTCTTACTTTGGTTTCCGGGACCGGCTTCTTTCAC
TGGCGAGGATTCCTGCGAGTTTCAGGTACACGGGTCCCTGGCAGTCATTG
CGGCCATGTTGGATGCTCTGGGAAAAGTGGATGGATTGCGGCCGGCGGAG
CCGGGAGAGTTCACAAAGAGAGCGTTCTTTGGTGGCAAACTGGATTTGAC
AGAGGTGGAGGGATTGGCCGATCTTATCCATGCTGAAACGGAGGCGCAAA
GAAAGCAGGCACTGCTACAAAGCACTGGAGCACTGGCTCGACTCTACGAC
AACTGGCGCCGTCGACTTATTCGCTGTGCTGCCCATTTGGAGGCCTACAT
AGACTTCGCCGAAGAGGAGCAAATCGAAGGCGGCATCATCCTGCAACTCG
GCAAAGAACTAAAGGCGGTAAAGCGTGAGATTCGCGAGCATTTGAGTGAC
CAGCGGCAGGGAGAGCTCCTCCGCGACGGAGTCCGCACTGTGATCATTGG
AGCACCCAATGTTGGCAAGAGTAGTCTGCTCAATCTCCTCTGCCAGCGAT
CCGTGTCCATAGTGACGGATCAGGCGGGCACCACAAGGGATATTATAGAA
ACAATGCACAATTTCGGAGGATACCCGGTGGTATTTTCCGACACAGCCGG
ATTACGCCGATATACTACGGATAGTATAGAGCAGGAGGGAATGCAGAGAG
CCAAGAATTGTCTAGTCCAATCTGATTTGATATTGCTCCTAGCAGAAGCC
AAGAACATTGCACAGCTGACGCACGACGACGCAGTTGCTCCGTTTGTAGA
TAGCTATCTGGGCGAGTTGGATATACCTCTGGACATGTGCTCAGGGAAAC
GTCTGCAATTGGTGGCCAATAAAACCGACACTTTGACGGATGAGGAGCAT
CAGCAGCTGGACAAGCTGTCCAACGTGTTAGCCATATCATGCCATAAGCC
CGATAAGATGCCCGTGTTTCTGGGATCACTGGAGAAGCAGCTGCAAGAAC
TGTGCGGAGAACCGCGGGCGGAGAATCCACGCATCACAAACACACGCTAC
CGTCAGCAACTGGAGCGCTGCATTGAGAACATTGATATTTTTCTACGAGA
TTACAGACCCGACGTTTACCCGGACATGGCCATAGCCGCCTCCAAGCTGC
GCAACTCCGTGCGCTGCATCGAACGCATCACCGGACACATCAGCTGCGAA
GATATACTCGACGTGGTCTTCAAGGACTTTTGCATTGGAAAGTGAAGAGA
TAGTTTATAGTTGTGAGTTGCGAAGATTACACTGCCCATGTTGAGTATTG
AATAAAATATTCATTTGTACCCTAGAGTTTTGATAAGCATAATAAATTAA
CATTTCTGCACAAAAAAAAAAAAAAAA

RH13838.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18528-RA 1779 CG18528-RA 114..1773 2..1661 8300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20181427..20182532 1661..556 5515 99.9 Minus
chr3R 27901430 chr3R 20182585..20182893 559..251 1530 99.7 Minus
chr3R 27901430 chr3R 20183208..20183460 254..2 1265 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:22:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24358095..24359200 1661..556 5530 100 Minus
3R 32079331 3R 24359253..24359561 559..251 1545 100 Minus
3R 32079331 3R 24359876..24360128 254..2 1265 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24098926..24100031 1661..556 5530 100 Minus
3R 31820162 3R 24100084..24100392 559..251 1545 100 Minus
3R 31820162 3R 24100707..24100959 254..2 1265 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:48:35 has no hits.

RH13838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:49:29 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20181427..20182529 559..1661 99 <- Minus
chr3R 20182586..20182891 253..558 99 <- Minus
chr3R 20183210..20183460 1..252 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:41:43 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1482 64..1545 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:12 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1482 64..1545 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:55 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1482 64..1545 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:55 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1482 64..1545 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:55:05 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1482 64..1545 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:07 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1658 4..1661 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:12 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1658 4..1661 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:55 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 16..1676 1..1661 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:55 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 1..1658 4..1661 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:05 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 16..1676 1..1661 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:29 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24358095..24359197 559..1661 100 <- Minus
3R 24359254..24359559 253..558 100 <- Minus
3R 24359878..24360128 1..252 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:29 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24358095..24359197 559..1661 100 <- Minus
3R 24359254..24359559 253..558 100 <- Minus
3R 24359878..24360128 1..252 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:29 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24358095..24359197 559..1661 100 <- Minus
3R 24359254..24359559 253..558 100 <- Minus
3R 24359878..24360128 1..252 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:55 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20183817..20184919 559..1661 100 <- Minus
arm_3R 20184976..20185281 253..558 100 <- Minus
arm_3R 20185600..20185850 1..252 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:58 Download gff for RH13838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24098926..24100028 559..1661 100 <- Minus
3R 24100085..24100390 253..558 100 <- Minus
3R 24100709..24100959 1..252 99   Minus

RH13838.pep Sequence

Translation from 63 to 1544

> RH13838.pep
MALLRNASQSFLGSFRRFASSGCTIYSLSSGHVKCGVSVIRVSGPQTKKA
LRAIVANKEYEPKARQAYLKSFYHPASKEMIDRGLLLWFPGPASFTGEDS
CEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG
LADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAE
EEQIEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNV
GKSSLLNLLCQRSVSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRY
TTDSIEQEGMQRAKNCLVQSDLILLLAEAKNIAQLTHDDAVAPFVDSYLG
ELDIPLDMCSGKRLQLVANKTDTLTDEEHQQLDKLSNVLAISCHKPDKMP
VFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIFLRDYRPD
VYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK*

RH13838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20720-PA 493 GF20720-PA 1..493 1..493 2356 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12352-PA 493 GG12352-PA 1..493 1..493 2595 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18796-PA 495 GH18796-PA 1..495 1..493 2142 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18528-PA 493 CG18528-PA 1..493 1..493 2527 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22686-PA 494 GI22686-PA 1..494 1..493 2142 80.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21987-PA 493 GL21987-PA 1..493 1..493 2254 84.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27334-PA 493 GA27334-PA 1..493 1..493 2250 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23491-PA 493 GM23491-PA 1..493 1..493 2595 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18297-PA 493 GD18297-PA 1..493 1..493 2604 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23413-PA 494 GJ23413-PA 1..494 1..493 2148 81.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22335-PA 507 GK22335-PA 1..507 1..493 2022 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10804-PA 493 GE10804-PA 1..493 1..493 2605 99 Plus

RH13838.hyp Sequence

Translation from 63 to 1544

> RH13838.hyp
MALLRNASQSFLGSFRRFASSGCTIYSLSSGHVKCGVSVIRVSGPQTKKA
LRAIVANKEYEPKARQAYLKSFYHPASKEMIDRGLLLWFPGPASFTGEDS
CEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG
LADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAE
EEQIEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNV
GKSSLLNLLCQRSVSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRY
TTDSIEQEGMQRAKNCLVQSDLILLLAEAKNIAQLTHDDAVAPFVDSYLG
ELDIPLDMCSGKRLQLVANKTDTLTDEEHQQLDKLSNVLAISCHKPDKMP
VFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIFLRDYRPD
VYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK*

RH13838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18528-PA 493 CG18528-PA 1..493 1..493 2527 100 Plus