BDGP Sequence Production Resources |
Search the DGRC for RH13838
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 138 |
Well: | 38 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18528-RA |
Protein status: | RH13838.pep: gold |
Preliminary Size: | 1539 |
Sequenced Size: | 1677 |
Gene | Date | Evidence |
---|---|---|
CG18528 | 2001-12-17 | Blastp of sequenced clone |
CG18528 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18528 | 2003-01-01 | Sim4 clustering to Release 3 |
CG18528 | 2008-04-29 | Release 5.5 accounting |
CG18528 | 2008-08-15 | Release 5.9 accounting |
CG18528 | 2008-12-18 | 5.12 accounting |
1677 bp (1677 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071692
> RH13838.complete GACACTTAATATCACGTTCAATTGTTTATTATTCGGCGGTTGGGATTTAA TTGTTTTTCGGCGATGGCGCTTCTCAGAAACGCGTCCCAGAGCTTCTTGG GCAGTTTCCGGCGCTTTGCCAGCAGCGGATGCACCATCTACAGCCTCAGT TCCGGTCATGTCAAGTGCGGTGTGTCCGTGATCCGTGTCTCCGGGCCGCA AACAAAGAAGGCCCTCCGAGCAATTGTTGCAAACAAAGAATACGAGCCAA AGGCTCGTCAGGCGTATCTGAAATCCTTCTACCATCCCGCCAGCAAAGAG ATGATTGACCGTGGGCTCTTACTTTGGTTTCCGGGACCGGCTTCTTTCAC TGGCGAGGATTCCTGCGAGTTTCAGGTACACGGGTCCCTGGCAGTCATTG CGGCCATGTTGGATGCTCTGGGAAAAGTGGATGGATTGCGGCCGGCGGAG CCGGGAGAGTTCACAAAGAGAGCGTTCTTTGGTGGCAAACTGGATTTGAC AGAGGTGGAGGGATTGGCCGATCTTATCCATGCTGAAACGGAGGCGCAAA GAAAGCAGGCACTGCTACAAAGCACTGGAGCACTGGCTCGACTCTACGAC AACTGGCGCCGTCGACTTATTCGCTGTGCTGCCCATTTGGAGGCCTACAT AGACTTCGCCGAAGAGGAGCAAATCGAAGGCGGCATCATCCTGCAACTCG GCAAAGAACTAAAGGCGGTAAAGCGTGAGATTCGCGAGCATTTGAGTGAC CAGCGGCAGGGAGAGCTCCTCCGCGACGGAGTCCGCACTGTGATCATTGG AGCACCCAATGTTGGCAAGAGTAGTCTGCTCAATCTCCTCTGCCAGCGAT CCGTGTCCATAGTGACGGATCAGGCGGGCACCACAAGGGATATTATAGAA ACAATGCACAATTTCGGAGGATACCCGGTGGTATTTTCCGACACAGCCGG ATTACGCCGATATACTACGGATAGTATAGAGCAGGAGGGAATGCAGAGAG CCAAGAATTGTCTAGTCCAATCTGATTTGATATTGCTCCTAGCAGAAGCC AAGAACATTGCACAGCTGACGCACGACGACGCAGTTGCTCCGTTTGTAGA TAGCTATCTGGGCGAGTTGGATATACCTCTGGACATGTGCTCAGGGAAAC GTCTGCAATTGGTGGCCAATAAAACCGACACTTTGACGGATGAGGAGCAT CAGCAGCTGGACAAGCTGTCCAACGTGTTAGCCATATCATGCCATAAGCC CGATAAGATGCCCGTGTTTCTGGGATCACTGGAGAAGCAGCTGCAAGAAC TGTGCGGAGAACCGCGGGCGGAGAATCCACGCATCACAAACACACGCTAC CGTCAGCAACTGGAGCGCTGCATTGAGAACATTGATATTTTTCTACGAGA TTACAGACCCGACGTTTACCCGGACATGGCCATAGCCGCCTCCAAGCTGC GCAACTCCGTGCGCTGCATCGAACGCATCACCGGACACATCAGCTGCGAA GATATACTCGACGTGGTCTTCAAGGACTTTTGCATTGGAAAGTGAAGAGA TAGTTTATAGTTGTGAGTTGCGAAGATTACACTGCCCATGTTGAGTATTG AATAAAATATTCATTTGTACCCTAGAGTTTTGATAAGCATAATAAATTAA CATTTCTGCACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18528-RA | 1779 | CG18528-RA | 114..1773 | 2..1661 | 8300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20181427..20182532 | 1661..556 | 5515 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 20182585..20182893 | 559..251 | 1530 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 20183208..20183460 | 254..2 | 1265 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24358095..24359200 | 1661..556 | 5530 | 100 | Minus |
3R | 32079331 | 3R | 24359253..24359561 | 559..251 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 24359876..24360128 | 254..2 | 1265 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24098926..24100031 | 1661..556 | 5530 | 100 | Minus |
3R | 31820162 | 3R | 24100084..24100392 | 559..251 | 1545 | 100 | Minus |
3R | 31820162 | 3R | 24100707..24100959 | 254..2 | 1265 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20181427..20182529 | 559..1661 | 99 | <- | Minus |
chr3R | 20182586..20182891 | 253..558 | 99 | <- | Minus |
chr3R | 20183210..20183460 | 1..252 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1482 | 64..1545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1482 | 64..1545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1482 | 64..1545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1482 | 64..1545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1482 | 64..1545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1658 | 4..1661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1658 | 4..1661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 16..1676 | 1..1661 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 1..1658 | 4..1661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18528-RA | 16..1676 | 1..1661 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24358095..24359197 | 559..1661 | 100 | <- | Minus |
3R | 24359254..24359559 | 253..558 | 100 | <- | Minus |
3R | 24359878..24360128 | 1..252 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24358095..24359197 | 559..1661 | 100 | <- | Minus |
3R | 24359254..24359559 | 253..558 | 100 | <- | Minus |
3R | 24359878..24360128 | 1..252 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24358095..24359197 | 559..1661 | 100 | <- | Minus |
3R | 24359254..24359559 | 253..558 | 100 | <- | Minus |
3R | 24359878..24360128 | 1..252 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20183817..20184919 | 559..1661 | 100 | <- | Minus |
arm_3R | 20184976..20185281 | 253..558 | 100 | <- | Minus |
arm_3R | 20185600..20185850 | 1..252 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24098926..24100028 | 559..1661 | 100 | <- | Minus |
3R | 24100085..24100390 | 253..558 | 100 | <- | Minus |
3R | 24100709..24100959 | 1..252 | 99 | Minus |
Translation from 63 to 1544
> RH13838.pep MALLRNASQSFLGSFRRFASSGCTIYSLSSGHVKCGVSVIRVSGPQTKKA LRAIVANKEYEPKARQAYLKSFYHPASKEMIDRGLLLWFPGPASFTGEDS CEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG LADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAE EEQIEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNV GKSSLLNLLCQRSVSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRY TTDSIEQEGMQRAKNCLVQSDLILLLAEAKNIAQLTHDDAVAPFVDSYLG ELDIPLDMCSGKRLQLVANKTDTLTDEEHQQLDKLSNVLAISCHKPDKMP VFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIFLRDYRPD VYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20720-PA | 493 | GF20720-PA | 1..493 | 1..493 | 2356 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12352-PA | 493 | GG12352-PA | 1..493 | 1..493 | 2595 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18796-PA | 495 | GH18796-PA | 1..495 | 1..493 | 2142 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18528-PA | 493 | CG18528-PA | 1..493 | 1..493 | 2527 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22686-PA | 494 | GI22686-PA | 1..494 | 1..493 | 2142 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21987-PA | 493 | GL21987-PA | 1..493 | 1..493 | 2254 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27334-PA | 493 | GA27334-PA | 1..493 | 1..493 | 2250 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23491-PA | 493 | GM23491-PA | 1..493 | 1..493 | 2595 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18297-PA | 493 | GD18297-PA | 1..493 | 1..493 | 2604 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23413-PA | 494 | GJ23413-PA | 1..494 | 1..493 | 2148 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22335-PA | 507 | GK22335-PA | 1..507 | 1..493 | 2022 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10804-PA | 493 | GE10804-PA | 1..493 | 1..493 | 2605 | 99 | Plus |
Translation from 63 to 1544
> RH13838.hyp MALLRNASQSFLGSFRRFASSGCTIYSLSSGHVKCGVSVIRVSGPQTKKA LRAIVANKEYEPKARQAYLKSFYHPASKEMIDRGLLLWFPGPASFTGEDS CEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG LADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAE EEQIEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNV GKSSLLNLLCQRSVSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRY TTDSIEQEGMQRAKNCLVQSDLILLLAEAKNIAQLTHDDAVAPFVDSYLG ELDIPLDMCSGKRLQLVANKTDTLTDEEHQQLDKLSNVLAISCHKPDKMP VFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIFLRDYRPD VYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18528-PA | 493 | CG18528-PA | 1..493 | 1..493 | 2527 | 100 | Plus |