BDGP Sequence Production Resources |
Search the DGRC for RH14316
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 143 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pu-RC |
Protein status: | RH14316.pep: gold |
Sequenced Size: | 1755 |
Gene | Date | Evidence |
---|---|---|
Pu-RC | 2010-11-11 | Gleaning Pick By Joe Carlson |
1755 bp assembled on 2010-12-09
GenBank Submission: BT125829.1
> RH14316.complete GACCAGAAGAGCAGAGCCACCCGAAGCGCCAACACGCGAAGACAAAGTCC GGCAGACAGCAGCGCAAAAAGAGACAGATAGCAGTGAGAAAATCATCGAG GAAAAAAGATTGTGTGCTAGCCGTCAAATTGAGTTCCATTCGAGTGGCAA ACAAACCTGAGTAGCCGCACCGCCATGAGCTTTACCCGCCAACTGTCCGA GATGAGTGCCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGC AGGCCCACATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGT AGCACCTCGGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGA GGAGGCCACTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTC CTGCTCTCGTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAG ACCAACGGCAGCAGTCCGGATAGTGATGGCCACGAGAAGTGCACGTTCCA CCACGACCTGGAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTC CGGACATGGCACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAAT CCCGATCGCCAGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCAT GCTGTACTTCACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATG GCGCCGTTTTCGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATT GAAATGTTCTCCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGT TTCCATCGGTTATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGG CACGCATTGTCGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTA ACTAAGCAGATCGCAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGT AGCAGTGGTCGTAGAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGC AGAAGATCAACAGCAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGA GACGATCCCAAGACCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAATA GAGTGGGCACTAGAGGACGCTACTGAAATCCGAGACCAACTAAACCCCTA CAATATTGGAGGCGCTTATATACAAACAAACAAAAATGAAACGAAACACA GGGTCCATTAGTTTATGTTTTTAGGATTGATTTCATTTAGTTAGTGCAAT GATTGCGCAGCCATTTTCCTTGTTGATTTGTGTAAAAATTGTTGAAAAAT TTTGTTAGCAAAATACGTTTTTTAGATAGATGAATGTAATGAGAAGCGAG ATTCGAAGAGGACGAGATTTGAATACCGGTGTTGGGTAGTTTTATGTTCA ATTTTATATGCAGTTTTATGGCACTTGAACGATAATTTTTACAACGTATA CATACGATTAATGCATTGTGCAATAAGGGAACAACTGATAATAAATCACG GCAAATTGTTTAGGGAATTTACAATTTATAAACAGTTCACATCAAATTAA TCAGATCTATAGTTATGTATGTATGTTAACCTATATAAAGAGTTGCATTC ATAATGTTCCTCGACAGGGACCAAAGTATATTGGAAGATTTTAAATGTTA AAATTATATGCTCATTATGTAAATGACGTTGCTTGTAGTGAGTCAAAGCT GCTTATTAATTATACAATAAATTATGTATTTAAATAACGAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17068294..17069063 | 972..1739 | 3680 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 17065582..17066059 | 2..479 | 2285 | 98.5 | Plus |
chr2R | 21145070 | chr2R | 17066400..17066610 | 478..688 | 1055 | 100 | Plus |
chr2R | 21145070 | chr2R | 17067877..17068043 | 688..854 | 835 | 100 | Plus |
chr2R | 21145070 | chr2R | 17068102..17068219 | 854..971 | 575 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21181836..21182606 | 972..1739 | 3775 | 99.6 | Plus |
2R | 25286936 | 2R | 21179120..21179597 | 2..479 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 21179937..21180147 | 478..688 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 688..854 | 835 | 100 | Plus |
2R | 25286936 | 2R | 21181644..21181761 | 854..971 | 590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21183035..21183805 | 972..1739 | 3785 | 99.6 | Plus |
2R | 25260384 | 2R | 21180319..21180796 | 2..479 | 2390 | 100 | Plus |
2R | 25260384 | 2R | 21181136..21181346 | 478..688 | 1055 | 100 | Plus |
2R | 25260384 | 2R | 21182618..21182784 | 688..854 | 835 | 100 | Plus |
2R | 25260384 | 2R | 21182843..21182960 | 854..971 | 590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6193..6244 | 1142..1192 | 122 | 73.1 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1525..1598 | 1128..1202 | 120 | 64 | Plus |
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 4580..4641 | 1142..1204 | 114 | 66.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17066401..17066610 | 479..688 | 100 | -> | Plus |
chr2R | 17067878..17068043 | 689..854 | 100 | -> | Plus |
chr2R | 17068103..17068219 | 855..971 | 99 | -> | Plus |
chr2R | 17065581..17066058 | 1..478 | 98 | -> | Plus |
chr2R | 17068294..17069024 | 972..1700 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RC | 1..927 | 175..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RC | 1..927 | 175..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RC | 1..927 | 175..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RC | 2..1742 | 2..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RC | 2..1742 | 2..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pu-RC | 2..1742 | 2..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21179119..21179596 | 1..478 | 99 | -> | Plus |
2R | 21179938..21180147 | 479..688 | 100 | -> | Plus |
2R | 21181420..21181585 | 689..854 | 100 | -> | Plus |
2R | 21181645..21181761 | 855..971 | 100 | -> | Plus |
2R | 21181836..21182606 | 972..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21179119..21179596 | 1..478 | 99 | -> | Plus |
2R | 21179938..21180147 | 479..688 | 100 | -> | Plus |
2R | 21181420..21181585 | 689..854 | 100 | -> | Plus |
2R | 21181645..21181761 | 855..971 | 100 | -> | Plus |
2R | 21181836..21182606 | 972..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21179119..21179596 | 1..478 | 99 | -> | Plus |
2R | 21179938..21180147 | 479..688 | 100 | -> | Plus |
2R | 21181420..21181585 | 689..854 | 100 | -> | Plus |
2R | 21181645..21181761 | 855..971 | 100 | -> | Plus |
2R | 21181836..21182606 | 972..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17067443..17067652 | 479..688 | 100 | -> | Plus |
arm_2R | 17068925..17069090 | 689..854 | 100 | -> | Plus |
arm_2R | 17069150..17069266 | 855..971 | 100 | -> | Plus |
arm_2R | 17066624..17067101 | 1..478 | 99 | -> | Plus |
arm_2R | 17069341..17070111 | 972..1739 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21180318..21180795 | 1..478 | 99 | -> | Plus |
2R | 21181137..21181346 | 479..688 | 100 | -> | Plus |
2R | 21182619..21182784 | 689..854 | 100 | -> | Plus |
2R | 21182844..21182960 | 855..971 | 100 | -> | Plus |
2R | 21183035..21183805 | 972..1739 | 99 | Plus |
Translation from 174 to 1100
> RH14316.hyp MSFTRQLSEMSASELNDAIDDTNFPQAHILSRGRNNSVCSTSSTSGTSSL ADRQQNQAEEATAIAGTPVEEVAPAPALVPLAGNQRPRLILKTNGSSPDS DGHEKCTFHHDLELDHKPPTREALLPDMARSYRLLLGGLGENPDRQGLIK TPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHDEMVVVKDIEMFSMCEH HLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSRRLQVQERLTKQIAVAV TQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGVFRDDPKTREE FLNLVNSK*
Translation from 174 to 1100
> RH14316.pep MSFTRQLSEMSASELNDAIDDTNFPQAHILSRGRNNSVCSTSSTSGTSSL ADRQQNQAEEATAIAGTPVEEVAPAPALVPLAGNQRPRLILKTNGSSPDS DGHEKCTFHHDLELDHKPPTREALLPDMARSYRLLLGGLGENPDRQGLIK TPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHDEMVVVKDIEMFSMCEH HLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSRRLQVQERLTKQIAVAV TQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGVFRDDPKTREE FLNLVNSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11941-PA | 285 | GF11941-PA | 73..285 | 91..308 | 1070 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22097-PA | 271 | GG22097-PA | 18..271 | 58..308 | 1087 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20729-PA | 337 | GH20729-PA | 1..337 | 1..308 | 1262 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pu-PC | 308 | CG9441-PC | 1..308 | 1..308 | 1573 | 100 | Plus |
Pu-PA | 324 | CG9441-PA | 1..324 | 1..308 | 1546 | 95.1 | Plus |
Pu-PB | 273 | CG9441-PB | 18..273 | 58..308 | 1088 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20812-PA | 274 | GI20812-PA | 65..274 | 99..308 | 1059 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10161-PA | 274 | GL10161-PA | 42..274 | 77..308 | 1064 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30270-PB | 325 | GA30270-PB | 1..325 | 1..308 | 1343 | 85.5 | Plus |
Dpse\GA30270-PA | 277 | GA30270-PA | 42..277 | 77..308 | 1056 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15814-PA | 273 | GM15814-PA | 18..273 | 58..308 | 1088 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11572-PA | 273 | GD11572-PA | 18..273 | 58..308 | 1088 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20545-PA | 270 | GJ20545-PA | 42..270 | 77..308 | 1062 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21906-PA | 321 | GK21906-PA | 1..321 | 1..308 | 1316 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12177-PA | 271 | GE12177-PA | 18..271 | 58..308 | 1084 | 85 | Plus |