BDGP Sequence Production Resources |
Search the DGRC for RH14616
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 146 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7059-RD |
Protein status: | RH14616.pep: gold |
Sequenced Size: | 1242 |
Gene | Date | Evidence |
---|---|---|
CG7059-RD | 2009-06-22 | Replacement based on scoring |
1242 bp assembled on 2009-08-13
GenBank Submission: BT099570.1
> RH14616.complete GAGTGCGGATTGGCATCCGAAAGATACAGGAACGTGGTGGCTGCAGCTGC AACGGGAAGACCATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTGTAACG TATATAAAGGCAACCACAACACAAAGTAAACACACGCGAAAATCCTAACG AAATAGAGAGATACAACAAAAAGATACGAAAAAAGATACAACCCACGAGA ATAACAATGCGCGAAATTCAGGCCTCCCAATTTATGACGAAAACAAATCG CTTGGTGATTTTGAGGCATGGCGAAAGTGATTTCAACATTGAGAACAAAT TCTGCGGTTGGCATGATGCGCCATTGAGTGAATTCGGCGTCCAGGAGGCC CTGACTGTGGCGATTCCCGCGCTCGTCCAATCCGAGTTGGAATTCGACGT GGTCTATTCATCCGTATTGAGCAGATCTCGTCAAACGGCCGAATTGATAC TCTCCAAGTTGAACTGCGCCTATGTGCCCATTAAGGAGGATTGGCGGCTG TGCGAAAGGCACTACGGAAATCTGACTGGTTGCCGGAAACGAGTGGTAGC CGATCGCTATGGGGAGGAGCAGGTTCAGGCCTGGCGACGTGGATACGACT GCGTACCGCCGCCCATCGATGAGAAGAACCGCTACTTCTACACCATTTGC AGCAATCCCATATTCGATGATGTTCCTCGCGGTGAGTTCCCCCTCGCGGA ATCCCTTCACATGTGCGTCGATCGAGTGAAACCCGTGTGGAAGGAGGTCA GGCGGGAAGTGTTCCAAGGCACCCGGGTACTAATGTGCGTCCACGGAACT GTGGCCCGTGCTCTCGTCCAGCACATTGAGGGAATCTCCAACGAGGCCAT CGAAAAGGTTAACATTCCAAATTGCGTGCCACGCGTCTATGAGTTCGATT TGAAAACGGGAGGCTTGGTTGGAGCTGCCATCAATCTGGGGGATCAGGAG TATATTAGGCGGAAGACAGCCCAGGTGGCAGCCATTGGTGACTGATTGTG GAGCACTCCTCTCGACTTTTTTGGAATTTACATCGATATGTGGCCGACTG CATTTACTTAAGCCTTTGCCGCTTAAAGTCCGAGAACATCGGCTGATAAG GATATTATGACTACTATTTATTGGTCTACACCATCTGATATTTTCGGCCA AAAATATACAATTTATACAAAATATAATTGATGGAGAAGATTACATATAC GTACATAAATATAATAAAAATAAGCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18214900..18215396 | 336..832 | 2455 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 18215451..18215846 | 831..1226 | 1980 | 100 | Plus |
chr3R | 27901430 | chr3R | 18213523..18213744 | 2..223 | 1095 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 18214725..18214838 | 224..337 | 570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22391368..22391864 | 336..832 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 22391919..22392315 | 831..1227 | 1985 | 100 | Plus |
3R | 32079331 | 3R | 22389981..22390202 | 2..223 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 22391194..22391307 | 224..337 | 570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22132199..22132695 | 336..832 | 2485 | 100 | Plus |
3R | 31820162 | 3R | 22132750..22133146 | 831..1227 | 1985 | 100 | Plus |
3R | 31820162 | 3R | 22130812..22131033 | 2..223 | 1110 | 100 | Plus |
3R | 31820162 | 3R | 22132025..22132138 | 224..337 | 570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1097..1171 | 1223..1150 | 111 | 66.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18213522..18213744 | 1..223 | 99 | -> | Plus |
chr3R | 18214725..18214837 | 224..336 | 100 | -> | Plus |
chr3R | 18214901..18215395 | 337..831 | 99 | -> | Plus |
chr3R | 18215452..18215846 | 832..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 1..789 | 207..995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 1..789 | 207..995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 1..789 | 207..995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 1..789 | 207..995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 2..1226 | 2..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 2..1226 | 2..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 2..1226 | 2..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RD | 2..1226 | 2..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22389980..22390202 | 1..223 | 99 | -> | Plus |
3R | 22391194..22391306 | 224..336 | 100 | -> | Plus |
3R | 22391369..22391863 | 337..831 | 100 | -> | Plus |
3R | 22391920..22392314 | 832..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22389980..22390202 | 1..223 | 99 | -> | Plus |
3R | 22391194..22391306 | 224..336 | 100 | -> | Plus |
3R | 22391369..22391863 | 337..831 | 100 | -> | Plus |
3R | 22391920..22392314 | 832..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22389980..22390202 | 1..223 | 99 | -> | Plus |
3R | 22391194..22391306 | 224..336 | 100 | -> | Plus |
3R | 22391369..22391863 | 337..831 | 100 | -> | Plus |
3R | 22391920..22392314 | 832..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18215702..18215924 | 1..223 | 99 | -> | Plus |
arm_3R | 18216916..18217028 | 224..336 | 100 | -> | Plus |
arm_3R | 18217091..18217585 | 337..831 | 100 | -> | Plus |
arm_3R | 18217642..18218036 | 832..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22130811..22131033 | 1..223 | 99 | -> | Plus |
3R | 22132025..22132137 | 224..336 | 100 | -> | Plus |
3R | 22132200..22132694 | 337..831 | 100 | -> | Plus |
3R | 22132751..22133145 | 832..1226 | 100 | Plus |
Translation from 206 to 994
> RH14616.pep MREIQASQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGVQEALT VAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKEDWRLCE RHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFYTICSN PIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCVHGTVA RALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLGDQEYI RRKTAQVAAIGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18444-PA | 265 | GF18444-PA | 8..264 | 5..261 | 1069 | 73.2 | Plus |
Dana\GF23292-PA | 255 | GF23292-PA | 1..252 | 10..261 | 500 | 41.7 | Plus |
Dana\GF17736-PA | 288 | GF17736-PA | 39..285 | 15..261 | 497 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11129-PA | 267 | GG11129-PA | 10..267 | 5..262 | 1338 | 95.7 | Plus |
Dere\GG17149-PA | 292 | GG17149-PA | 43..289 | 15..261 | 505 | 41.4 | Plus |
Dere\GG11648-PA | 255 | GG11648-PA | 1..252 | 10..261 | 500 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13344-PA | 265 | GH13344-PA | 8..265 | 5..262 | 904 | 61.6 | Plus |
Dgri\GH15422-PA | 247 | GH15422-PA | 1..244 | 18..261 | 505 | 39 | Plus |
Dgri\GH23221-PA | 255 | GH23221-PA | 1..252 | 10..261 | 493 | 40.9 | Plus |
Dgri\GH14297-PA | 255 | GH14297-PA | 1..252 | 10..261 | 493 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7059-PD | 262 | CG7059-PD | 1..262 | 1..262 | 1388 | 100 | Plus |
CG7059-PA | 267 | CG7059-PA | 12..267 | 7..262 | 1360 | 100 | Plus |
CG7059-PC | 253 | CG7059-PC | 1..253 | 10..262 | 1345 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 6..252 | 15..261 | 501 | 41.4 | Plus |
Pglym78-PB | 255 | CG1721-PB | 6..252 | 15..261 | 501 | 41.4 | Plus |
Pglym78-PA | 255 | CG1721-PA | 6..252 | 15..261 | 501 | 41.4 | Plus |
Pglym87-PA | 292 | CG17645-PA | 43..289 | 15..261 | 486 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22381-PA | 268 | GI22381-PA | 1..268 | 1..262 | 882 | 59.7 | Plus |
Dmoj\GI10280-PA | 293 | GI10280-PA | 45..290 | 16..261 | 521 | 39.1 | Plus |
Dmoj\GI23192-PA | 255 | GI23192-PA | 1..252 | 10..261 | 499 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24208-PA | 267 | GL24208-PA | 10..267 | 5..262 | 1058 | 73.3 | Plus |
Dper\GL23914-PA | 255 | GL23914-PA | 1..252 | 10..261 | 526 | 41.3 | Plus |
Dper\GL21564-PA | 309 | GL21564-PA | 60..306 | 15..261 | 526 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20068-PA | 267 | GA20068-PA | 10..267 | 5..262 | 1058 | 73.3 | Plus |
Dpse\GA20068-PB | 252 | GA20068-PB | 2..252 | 12..262 | 1039 | 74.1 | Plus |
Dpse\GA14593-PA | 290 | GA14593-PA | 41..287 | 15..261 | 533 | 42.6 | Plus |
Dpse\GA14392-PA | 255 | GA14392-PA | 1..252 | 10..261 | 526 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26427-PA | 267 | GM26427-PA | 10..267 | 5..262 | 1368 | 98.1 | Plus |
Dsec\GM26030-PA | 292 | GM26030-PA | 43..289 | 15..261 | 503 | 41.4 | Plus |
Dsec\GM12771-PA | 255 | GM12771-PA | 1..252 | 10..261 | 498 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20944-PA | 267 | GD20944-PA | 10..267 | 5..262 | 1369 | 98.1 | Plus |
Dsim\GD20588-PA | 341 | GD20588-PA | 43..286 | 15..258 | 498 | 41.5 | Plus |
Dsim\GD21420-PA | 429 | GD21420-PA | 6..112 | 15..122 | 279 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24414-PA | 265 | GJ24414-PA | 8..265 | 5..262 | 886 | 60.9 | Plus |
Dvir\GJ11087-PA | 299 | GJ11087-PA | 51..296 | 16..261 | 506 | 40.7 | Plus |
Dvir\GJ14508-PA | 255 | GJ14508-PA | 1..252 | 10..261 | 498 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14265-PA | 267 | GK14265-PA | 10..266 | 5..261 | 1002 | 66.9 | Plus |
Dwil\GK11893-PA | 255 | GK11893-PA | 1..252 | 10..261 | 529 | 41.7 | Plus |
Dwil\GK11561-PA | 287 | GK11561-PA | 37..284 | 15..261 | 500 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10295-PA | 253 | GE10295-PA | 1..253 | 10..262 | 1307 | 95.7 | Plus |
Dyak\GE24538-PA | 292 | GE24538-PA | 43..289 | 15..261 | 501 | 41.4 | Plus |
Dyak\Pglym78-PA | 255 | GE23839-PA | 1..252 | 10..261 | 492 | 41.3 | Plus |
Translation from 206 to 994
> RH14616.hyp MREIQASQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGVQEALT VAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKEDWRLCE RHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFYTICSN PIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCVHGTVA RALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLGDQEYI RRKTAQVAAIGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7059-PD | 262 | CG7059-PD | 1..262 | 1..262 | 1388 | 100 | Plus |
CG7059-PA | 267 | CG7059-PA | 12..267 | 7..262 | 1360 | 100 | Plus |
CG7059-PC | 253 | CG7059-PC | 1..253 | 10..262 | 1345 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 6..252 | 15..261 | 501 | 41.4 | Plus |
Pglym78-PB | 255 | CG1721-PB | 6..252 | 15..261 | 501 | 41.4 | Plus |