Clone RH14732 Report

Search the DGRC for RH14732

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:147
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG3009-RA
Protein status:RH14732.pep: gold
Sequenced Size:2068

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3009 2003-01-01 Sim4 clustering to Release 3
CG3009 2005-05-17 Blastp of sequenced clone
CG3009 2008-04-29 Release 5.5 accounting
CG3009 2008-08-15 Release 5.9 accounting
CG3009 2008-12-18 5.12 accounting

Clone Sequence Records

RH14732.complete Sequence

2068 bp (2068 high quality bases) assembled on 2005-05-17

GenBank Submission: BT022722

> RH14732.complete
GAGTTGCGCCGCAAACGCGTCGCGGAAATGTTTCGCTGCTTCAGCTGCTG
CTGCCACCGTCCGAAAGAAATCGAAATCGAAACCGAAATTTAATTTCAAT
TTTCAATAAAAATTTAAAGCCACAATTTAAGCAACGCGCCGCCGTCCTCT
TTGAATTCCGCATCCTTGGCAACCGTTACCGAATTAGAACACATAGTAAA
ACCCGATACAACGAAACGGGAATTCAAACCGTTTGATAATTTACTCCTTC
CTCCCTAAAGTTCTCAGTTGGCGCCATGAGGGAACCACTGCCCGTGGCGG
TGGTGACGTTGCTCCTGTTCCTGTGGCTCGGTTCGGCGATGCCACCCACA
TCTGGTTCGGCGGTGCTCATCTCCGACATGACCATGAGCGTCATGGTGGA
GCTATCCTCGCGACATCCCTTCTGCAAGATGCACACAGATCGTGGTGATA
TCCAGCGCATGTTGCTGCAATCGGATCCGCGACGCATACGCCAGGTGCCG
CGGGAGTCGGTGATGGAGCTCGAGGAGGTGTGCCGCCGTCAGGGATCCTA
TGGCCACGAGTTTCGCGGCGGACTGGGCTTCATCTATCCGGGCACAAAGT
GGTGCGGACCGGGCACAGCGGCCACCAGCTACGACGATCTCGGTGCGCAC
GCTCGCGAGGATCGCTGCTGTCGCGAGCACGACATGTGTCCCGATGTGCT
AAATGTGGGCGAATGCAGGCGAGGATTGTGCAATCGCGGCACATTCACGA
GAAGCCACTGCGATTGCGATGCCCGGTTCAGGCGATGCTTGCAGGCGGCA
AACACGGAGACGGCCAATACGCTGGGCGCCATCTTCTACAATGTGGTGCA
GGTGACGTGCTTCCAGGAGCGGAGTCCCTGCTCGGCACACCAGAGGTTCG
AGGACTTCTACTACCGCACCGATCACTGTCCGGCGGAATTCCGGCAGGCG
GATCTCTATGTGCCGCCGCACGGTGACAATCTGATAGCCAAGATCCTGGC
CCATCCGCAGGGCCGGGCCCTGGCCGCTCCGTCCTGGACGATTCCCGCCA
AGTCGACGGCGCGCCGTTGGGGCGTTAAATTGGCCAGCGTTGGCTTGGCG
GCGGTGAATATCCTGCGGGAGGTGGTGCAGCGACCCCGACTCCTGTGGGA
TAGCCTGCAGGCGCCGGTCTCCAGGGAGCTACCACCGCCGCAAAGATATC
ACGATCCGGGCTATCACTACGAGCGACCCGGACCCGGCTCGTCCTACGGA
TATGGCCAATACAGTGGTCGCGGTTACGGGGGCTTCGACTCCCCTTGGAG
CTAATTGCGGTATCACGAATGCCCCCGGAAGACTGTTCTGAGCGATTGGG
TGGAGTCCACTGGTCACGCGAAAATATGTTCCGTATGGCGAGTAATCCAA
AAGGCAGTTGTAAATGATATACAAGTACATACTAGGTTAGAGATTAGACA
GGATTAAAGATAGACATTCAATTGCCAAAGAAAAGCGCAGCAAGTACACT
TTAAGAAAATATCGCTTTCATACTTCGAAACGTGTGTATGAAGTTAATCG
GCGCGAATTCTTTGTTTCATCCTGTTTTATATTCTGGTAAAGTTTTTCAT
TCTGTCGGTTACTTATTATTCTGGAAAAGTTTCACTGTCATCAGATTTGC
CATCTTCGCGTGGGAAGAGAATGGGAATTGATACTTTAAATGGGTTTTTT
TTTGTGTAAGATAACCTTTTGTGAGTCACTAAGTGGTAAGGTAGAGAGAT
AGCTTTTAAGCAGACATAAACTTCATTGTACCGATGCGTATTTTTTTTTT
TAACAGAATTTGAAGATTACTCTGCCAATCGGTTAACTATTTGCTAGACC
ACACATGGATTGAACCGCCCAACTGCTCCCGCTTAGTATTAGTAGTCATA
AGTTGCAGTTACGGCTCCGCTAGGGAGTCGCAATCCTAGCTAACTTAGCT
GCATGTGTGATTGCCATTAACGTTATGCATGTACCGTGTTCACTAGTTGA
CCATTTGACCATTTGACAGTTGTGCTTTAGAAATAAACTCACTGAGAATT
CGCAAAAAAAAAAAAAAA

RH14732.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3009.a 2374 CG3009.a 20..2072 2..2054 10265 100 Plus
CG3009-RA 2490 CG3009-RA 20..2072 2..2054 10265 100 Plus
CG3009-RB 2207 CG3009-RB 20..2072 2..2054 10265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4551367..4552962 2053..442 7585 98.3 Minus
chrX 22417052 chrX 4559210..4559475 267..2 1330 100 Minus
chrX 22417052 chrX 4553032..4553212 442..262 905 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:22:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4658576..4660188 2054..442 8065 100 Minus
X 23542271 X 4666431..4666696 267..2 1330 100 Minus
X 23542271 X 4660258..4660438 442..262 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4666674..4668286 2054..442 8065 100 Minus
X 23527363 X 4674529..4674794 267..2 1330 100 Minus
X 23527363 X 4668356..4668536 442..262 905 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:36:36 has no hits.

RH14732.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:37:42 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4551367..4551514 1906..2053 97 == Minus
chrX 4551515..4552961 443..1891 99 <- Minus
chrX 4553032..4553206 268..442 100 <- Minus
chrX 4559210..4559475 1..267 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:42:08 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RB 1..1029 276..1304 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:27:37 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RB 1..1029 276..1304 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:03:07 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 1..1029 276..1304 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:11:35 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 1..1029 276..1304 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:51 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 1..1029 276..1304 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:30:52 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 2..2053 2..2053 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:27:37 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 2..2053 2..2053 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:03:07 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 4..2056 1..2053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:11:36 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 2..2053 2..2053 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:51 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
CG3009-RA 4..2056 1..2053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:42 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
X 4660258..4660432 268..442 100 <- Minus
X 4658577..4660187 443..2053 100 <- Minus
X 4666431..4666696 1..267 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:42 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
X 4660258..4660432 268..442 100 <- Minus
X 4658577..4660187 443..2053 100 <- Minus
X 4666431..4666696 1..267 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:42 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
X 4660258..4660432 268..442 100 <- Minus
X 4658577..4660187 443..2053 100 <- Minus
X 4666431..4666696 1..267 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:03:07 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4552610..4554220 443..2053 100 <- Minus
arm_X 4554291..4554465 268..442 100 <- Minus
arm_X 4560464..4560729 1..267 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:48:12 Download gff for RH14732.complete
Subject Subject Range Query Range Percent Splice Strand
X 4666675..4668285 443..2053 100 <- Minus
X 4668356..4668530 268..442 100 <- Minus
X 4674529..4674794 1..267 99   Minus

RH14732.pep Sequence

Translation from 275 to 1303

> RH14732.pep
MREPLPVAVVTLLLFLWLGSAMPPTSGSAVLISDMTMSVMVELSSRHPFC
KMHTDRGDIQRMLLQSDPRRIRQVPRESVMELEEVCRRQGSYGHEFRGGL
GFIYPGTKWCGPGTAATSYDDLGAHAREDRCCREHDMCPDVLNVGECRRG
LCNRGTFTRSHCDCDARFRRCLQAANTETANTLGAIFYNVVQVTCFQERS
PCSAHQRFEDFYYRTDHCPAEFRQADLYVPPHGDNLIAKILAHPQGRALA
APSWTIPAKSTARRWGVKLASVGLAAVNILREVVQRPRLLWDSLQAPVSR
ELPPPQRYHDPGYHYERPGPGSSYGYGQYSGRGYGGFDSPWS*

RH14732.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20851-PA 330 GF20851-PA 14..330 19..342 1441 86.5 Plus
Dana\GF22231-PA 309 GF22231-PA 197..302 100..208 258 43.1 Plus
Dana\GF21312-PA 204 GF21312-PA 71..177 102..207 244 43.9 Plus
Dana\GF12957-PA 186 GF12957-PA 42..156 101..215 221 39.7 Plus
Dana\GF11953-PA 172 GF11953-PA 22..145 99..216 215 41.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18524-PA 342 GG18524-PA 1..342 1..342 1782 96.2 Plus
Dere\GG17755-PA 309 GG17755-PA 197..297 100..200 260 44.6 Plus
Dere\GG19301-PA 217 GG19301-PA 84..190 102..207 243 44.9 Plus
Dere\GG23279-PA 186 GG23279-PA 42..155 101..214 216 37.4 Plus
Dere\GG10751-PA 173 GG10751-PA 24..138 100..215 206 41.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17900-PA 337 GH17900-PA 22..318 22..319 1313 83.8 Plus
Dgri\GH12690-PA 321 GH12690-PA 209..309 100..200 257 43.6 Plus
Dgri\GH21166-PA 189 GH21166-PA 42..150 101..209 229 42.7 Plus
Dgri\GH24101-PA 230 GH24101-PA 101..210 102..210 228 43.6 Plus
Dgri\GH20736-PA 172 GH20736-PA 19..132 99..212 208 38.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3009-PB 342 CG3009-PB 1..342 1..342 1876 100 Plus
CG3009-PA 342 CG3009-PA 1..342 1..342 1876 100 Plus
CG3009-PD 239 CG3009-PD 1..232 1..230 1128 90.6 Plus
CG42237-PB 309 CG42237-PB 197..297 100..200 259 44.6 Plus
CG42237-PA 363 CG4346-PA 251..351 100..200 259 44.6 Plus
GIIIspla2-PC 217 CG1583-PC 85..190 103..207 245 44.3 Plus
GIIIspla2-PB 217 CG1583-PB 85..190 103..207 245 44.3 Plus
sPLA2-PC 186 CG11124-PC 42..155 101..214 232 38.3 Plus
sPLA2-PA 186 CG11124-PA 42..155 101..214 232 38.3 Plus
CG30503-PB 173 CG30503-PB 16..163 92..232 227 36.9 Plus
CG30503-PA 173 CG30503-PA 16..163 92..232 227 36.9 Plus
sPLA2-PB 101 CG11124-PB 42..92 101..151 148 45.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15422-PA 138 GI15422-PA 21..121 22..125 429 80.8 Plus
Dmoj\GI16365-PA 312 GI16365-PA 200..300 100..200 266 44.6 Plus
Dmoj\GI14370-PA 213 GI14370-PA 81..187 102..207 245 44.9 Plus
Dmoj\GI18761-PA 184 GI18761-PA 42..150 101..209 234 41.8 Plus
Dmoj\GI20819-PA 165 GI20819-PA 19..110 99..190 207 41.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14551-PA 359 GL14551-PA 15..320 19..320 1394 88.9 Plus
Dper\GL14950-PA 352 GL14950-PA 197..297 100..200 261 44.6 Plus
Dper\GL20365-PA 206 GL20365-PA 75..173 102..199 238 46.5 Plus
Dper\GL10932-PA 168 GL10932-PA 22..123 99..201 223 44.7 Plus
Dper\GL11167-PA 186 GL11167-PA 42..155 101..214 220 39.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15641-PA 334 GA15641-PA 15..317 19..317 1377 88.8 Plus
Dpse\GA18124-PA 309 GA18124-PA 197..297 100..200 262 44.6 Plus
Dpse\GA13978-PA 206 GA13978-PA 75..173 102..199 237 46.5 Plus
Dpse\GA10773-PA 186 GA10773-PA 42..155 101..214 220 39.1 Plus
Dpse\GA15891-PA 168 GA15891-PA 22..123 99..201 218 43.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12671-PA 340 GM12671-PA 1..340 1..342 1786 98 Plus
Dsec\GM11601-PA 363 GM11601-PA 251..356 100..208 261 43.1 Plus
Dsec\GM11233-PA 218 GM11233-PA 85..191 102..207 244 44.9 Plus
Dsec\GM20955-PA 186 GM20955-PA 42..155 101..214 221 39.1 Plus
Dsec\GM20797-PA 173 GM20797-PA 22..146 98..216 205 38.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17099-PA 277 GD17099-PA 165..270 100..208 260 43.1 Plus
Dsim\GD10480-PA 186 GD10480-PA 42..155 101..214 221 39.1 Plus
Dsim\GD10259-PA 173 GD10259-PA 22..147 98..217 201 37.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16381-PA 337 GJ16381-PA 21..332 22..326 1332 84.2 Plus
Dvir\GJ16735-PA 321 GJ16735-PA 209..309 100..200 263 44.6 Plus
Dvir\GJ19410-PA 229 GJ19410-PA 97..203 102..207 240 43.9 Plus
Dvir\GJ21785-PA 187 GJ21785-PA 42..150 101..209 226 40.9 Plus
Dvir\GJ20552-PA 166 GJ20552-PA 19..115 99..196 224 42.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25148-PA 983 GK25148-PA 13..326 18..325 1455 85.5 Plus
Dwil\GK17378-PA 314 GK17378-PA 202..302 100..200 263 44.6 Plus
Dwil\GK21320-PA 188 GK21320-PA 44..153 101..210 229 41.4 Plus
Dwil\GK19962-PA 206 GK19962-PA 74..169 102..196 218 44.8 Plus
Dwil\GK22012-PA 157 GK22012-PA 11..110 101..201 207 38.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16841-PA 345 GE16841-PA 1..345 1..342 1665 92.2 Plus
Dyak\GE17044-PA 262 GE17044-PA 150..250 100..200 260 44.6 Plus
Dyak\GE15768-PA 217 GE15768-PA 84..190 102..207 241 43.9 Plus
Dyak\GE19126-PA 186 GE19126-PA 42..155 101..214 220 39.1 Plus
Dyak\GE24036-PA 173 GE24036-PA 24..119 100..196 201 45.4 Plus

RH14732.hyp Sequence

Translation from 275 to 1303

> RH14732.hyp
MREPLPVAVVTLLLFLWLGSAMPPTSGSAVLISDMTMSVMVELSSRHPFC
KMHTDRGDIQRMLLQSDPRRIRQVPRESVMELEEVCRRQGSYGHEFRGGL
GFIYPGTKWCGPGTAATSYDDLGAHAREDRCCREHDMCPDVLNVGECRRG
LCNRGTFTRSHCDCDARFRRCLQAANTETANTLGAIFYNVVQVTCFQERS
PCSAHQRFEDFYYRTDHCPAEFRQADLYVPPHGDNLIAKILAHPQGRALA
APSWTIPAKSTARRWGVKLASVGLAAVNILREVVQRPRLLWDSLQAPVSR
ELPPPQRYHDPGYHYERPGPGSSYGYGQYSGRGYGGFDSPWS*

RH14732.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3009-PB 342 CG3009-PB 1..342 1..342 1876 100 Plus
CG3009-PA 342 CG3009-PA 1..342 1..342 1876 100 Plus
CG3009-PD 239 CG3009-PD 1..232 1..230 1128 90.6 Plus
CG42237-PB 309 CG42237-PB 197..297 100..200 259 44.6 Plus
CG42237-PA 363 CG4346-PA 251..351 100..200 259 44.6 Plus